Wall clock time and date at job start Wed Apr 1 2020 04:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36762 * 125.80136 * 2 1 4 4 C 1.47266 * 126.94607 * 0.02562 * 3 2 1 5 5 O 1.21629 * 119.99508 * 29.33763 * 4 3 2 6 6 N 1.34777 * 120.00422 * 209.33939 * 4 3 2 7 7 C 1.46921 * 120.62824 * 356.47119 * 6 4 3 8 8 C 1.53197 * 108.77561 * 126.41247 * 7 6 4 9 9 C 1.53034 * 109.31157 * 54.63491 * 8 7 6 10 10 C 1.53047 * 109.53652 * 298.63390 * 9 8 7 11 11 H 1.09003 * 109.52369 * 301.39565 * 10 9 8 12 12 C 1.53006 * 109.49720 * 181.31852 * 10 9 8 13 13 H 1.08996 * 110.91397 * 302.60802 * 12 10 9 14 14 C 1.55153 * 111.00396 * 66.51253 * 12 10 9 15 15 C 1.54319 * 102.94493 * 153.57715 * 14 12 10 16 16 N 1.47291 * 107.30308 * 337.81738 * 15 14 12 17 17 C 1.36938 * 125.79331 * 178.92558 * 16 15 14 18 18 H 1.08001 * 120.00110 * 174.60307 * 17 16 15 19 19 C 1.38812 * 119.99954 * 354.60626 * 17 16 15 20 20 N 1.31617 * 120.00103 * 9.80582 * 19 17 16 21 21 Si 1.86799 * 120.00058 * 189.80290 * 19 17 16 22 22 H 1.48505 * 109.47059 * 94.96952 * 21 19 17 23 23 H 1.48494 * 109.47528 * 214.96916 * 21 19 17 24 24 H 1.48505 * 109.47260 * 334.96942 * 21 19 17 25 25 C 1.47425 * 108.56158 * 358.92296 * 16 15 14 26 26 C 1.46918 * 120.62849 * 176.49172 * 6 4 3 27 27 C 1.46691 * 106.11685 * 180.28325 * 3 2 1 28 28 C 1.34485 * 106.32729 * 359.56692 * 27 3 2 29 29 N 1.34659 * 125.80230 * 180.02562 * 2 1 3 30 30 C 1.46497 * 124.84874 * 359.96260 * 29 2 1 31 31 H 1.09003 * 109.47131 * 90.00103 * 1 2 3 32 32 H 1.09004 * 109.47217 * 209.99878 * 1 2 3 33 33 H 1.09000 * 109.47064 * 330.00118 * 1 2 3 34 34 H 1.09005 * 109.58675 * 246.19713 * 7 6 4 35 35 H 1.08999 * 109.58922 * 6.47874 * 7 6 4 36 36 H 1.09000 * 109.49549 * 174.58595 * 8 7 6 37 37 H 1.08994 * 109.49517 * 294.68387 * 8 7 6 38 38 H 1.09004 * 109.46181 * 178.61597 * 9 8 7 39 39 H 1.08997 * 109.46212 * 58.65106 * 9 8 7 40 40 H 1.09001 * 110.71787 * 271.93941 * 14 12 10 41 41 H 1.09002 * 110.72005 * 35.21174 * 14 12 10 42 42 H 1.08996 * 109.88728 * 97.22010 * 15 14 12 43 43 H 1.09000 * 109.88654 * 218.23557 * 15 14 12 44 44 H 0.97006 * 120.00204 * 180.02562 * 20 19 17 45 45 H 1.09000 * 110.36771 * 265.26679 * 25 16 15 46 46 H 1.09003 * 110.36719 * 143.04690 * 25 16 15 47 47 H 1.09003 * 109.58917 * 113.80348 * 26 6 4 48 48 H 1.09001 * 109.59295 * 353.37069 * 26 6 4 49 49 H 1.07996 * 126.83629 * 179.73913 * 27 3 2 50 50 H 1.08007 * 125.56944 * 180.14235 * 28 27 3 51 51 H 1.09000 * 109.47768 * 89.99854 * 30 29 2 52 52 H 1.09003 * 109.46996 * 209.99900 * 30 29 2 53 53 H 1.08998 * 109.47354 * 329.99401 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1092 0.0000 4 6 1.8702 2.5156 0.0005 5 8 0.8131 2.8238 0.5171 6 7 2.6418 3.4612 -0.5714 7 6 3.9560 3.1172 -1.1309 8 6 4.0168 3.6039 -2.5822 9 6 3.6847 5.0971 -2.6296 10 6 2.2653 5.3227 -2.1035 11 1 1.5582 4.7541 -2.7076 12 6 1.9223 6.8117 -2.1819 13 1 2.6425 7.4070 -1.6208 14 6 1.8375 7.2859 -3.6568 15 6 0.8714 8.4868 -3.5788 16 7 0.0714 8.3265 -2.3526 17 6 -0.8897 9.1929 -1.9043 18 1 -1.4820 8.9408 -1.0372 19 6 -1.1026 10.3953 -2.5646 20 7 -0.5238 10.6203 -3.7251 21 14 -2.2106 11.6939 -1.8062 22 1 -1.3852 12.6654 -1.0445 23 1 -2.9468 12.4059 -2.8814 24 1 -3.1808 11.0428 -0.8895 25 6 0.4783 7.0756 -1.6869 26 6 2.1848 4.8554 -0.6467 27 6 3.6882 0.6151 -0.0070 28 6 3.6095 -0.7274 -0.0008 29 7 2.2947 -1.0921 -0.0005 30 6 1.8093 -2.4744 -0.0003 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 4.7394 3.6035 -0.5494 35 1 4.0952 2.0366 -1.0995 36 1 5.0189 3.4413 -2.9788 37 1 3.2936 3.0512 -3.1818 38 1 3.7512 5.4514 -3.6583 39 1 4.3932 5.6465 -2.0099 40 1 2.8166 7.6014 -4.0172 41 1 1.4264 6.5007 -4.2913 42 1 1.4385 9.4164 -3.5319 43 1 0.2185 8.4946 -4.4516 44 1 -0.6723 11.4606 -4.1863 45 1 -0.1792 6.2578 -1.9817 46 1 0.4653 7.2005 -0.6041 47 1 2.8236 5.4835 -0.0258 48 1 1.1541 4.9216 -0.2983 49 1 4.5889 1.2109 -0.0128 50 1 4.4497 -1.4060 -0.0012 51 1 1.6884 -2.8172 -1.0279 52 1 2.5290 -3.1121 0.5131 53 1 0.8496 -2.5224 0.5141 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961248422.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:27 Heat of formation + Delta-G solvation = 24.186636 kcal Electronic energy + Delta-G solvation = -31099.997977 eV Core-core repulsion = 27165.344581 eV Total energy + Delta-G solvation = -3934.653396 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.38918 -40.89056 -39.46656 -37.90473 -35.27440 -33.98605 -33.29475 -32.55273 -32.37312 -30.88818 -28.81908 -27.93790 -27.27478 -26.41731 -25.97861 -23.92767 -22.98654 -21.83083 -21.59221 -21.01754 -20.69606 -19.21691 -18.83844 -17.98904 -17.21149 -16.87410 -16.69075 -16.56279 -16.24928 -15.78655 -15.56830 -15.39840 -15.18701 -14.61796 -14.49534 -14.30645 -14.06045 -14.01771 -13.89398 -13.83223 -13.62799 -13.60811 -13.45620 -13.24578 -13.07802 -12.85794 -12.75735 -12.69722 -12.49159 -12.21659 -12.07712 -12.02858 -11.81558 -11.72350 -11.64093 -11.40016 -11.31052 -11.03469 -10.71616 -10.68650 -9.62999 -9.36401 -9.04217 -8.90822 -7.88864 -5.21888 0.82402 1.42804 1.45468 1.54116 1.54587 1.88092 2.23852 2.47947 2.49551 3.28233 3.61641 3.64554 3.83018 3.86622 3.90273 4.00450 4.03460 4.14304 4.19132 4.23532 4.30993 4.34598 4.43661 4.45550 4.47745 4.59414 4.63297 4.67726 4.68391 4.72595 4.75601 4.84325 4.88732 4.92954 4.95837 4.99321 5.00884 5.09134 5.10753 5.16692 5.19851 5.27139 5.38826 5.41626 5.45436 5.57070 5.67713 5.68055 5.76439 5.82138 6.13887 6.18434 6.40998 6.60028 7.08633 7.32928 7.75974 8.42476 9.22773 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.018762 B = 0.002336 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.045734 B =11983.066488 C =12961.763588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.083 3.917 3 C -0.263 4.263 4 C 0.580 3.420 5 O -0.600 6.600 6 N -0.603 5.603 7 C 0.075 3.925 8 C -0.126 4.126 9 C -0.111 4.111 10 C -0.071 4.071 11 H 0.056 0.944 12 C -0.075 4.075 13 H 0.080 0.920 14 C -0.117 4.117 15 C 0.181 3.819 16 N -0.630 5.630 17 C -0.247 4.247 18 H 0.076 0.924 19 C -0.065 4.065 20 N -0.948 5.948 21 Si 0.978 3.022 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.270 1.270 25 C 0.137 3.863 26 C 0.120 3.880 27 C -0.191 4.191 28 C -0.002 4.002 29 N -0.442 5.442 30 C 0.058 3.942 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.130 0.870 36 H 0.104 0.896 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.012 0.988 43 H 0.002 0.998 44 H 0.248 0.752 45 H 0.007 0.993 46 H 0.033 0.967 47 H 0.073 0.927 48 H 0.060 0.940 49 H 0.174 0.826 50 H 0.207 0.793 51 H 0.088 0.912 52 H 0.111 0.889 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.883 -30.977 4.969 35.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.035 4.035 3 C -0.273 4.273 4 C 0.372 3.628 5 O -0.483 6.483 6 N -0.333 5.333 7 C -0.046 4.046 8 C -0.164 4.164 9 C -0.148 4.148 10 C -0.091 4.091 11 H 0.074 0.926 12 C -0.095 4.095 13 H 0.098 0.902 14 C -0.155 4.155 15 C 0.056 3.944 16 N -0.356 5.356 17 C -0.376 4.376 18 H 0.094 0.906 19 C -0.258 4.258 20 N -0.597 5.597 21 Si 0.806 3.194 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.195 1.195 25 C 0.011 3.989 26 C -0.003 4.003 27 C -0.214 4.214 28 C -0.129 4.129 29 N -0.117 5.117 30 C -0.082 4.082 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.147 0.853 36 H 0.122 0.878 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.106 0.894 41 H 0.083 0.917 42 H 0.030 0.970 43 H 0.020 0.980 44 H 0.057 0.943 45 H 0.025 0.975 46 H 0.052 0.948 47 H 0.091 0.909 48 H 0.078 0.922 49 H 0.191 0.809 50 H 0.224 0.776 51 H 0.106 0.894 52 H 0.129 0.871 53 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.164 -30.999 5.181 34.896 hybrid contribution -1.277 1.513 0.151 1.986 sum 13.886 -29.486 5.332 33.026 Atomic orbital electron populations 1.20513 0.87389 1.04177 1.03266 1.20341 0.94065 0.86009 1.03057 1.20120 0.95570 0.90698 1.20875 1.17998 0.82559 0.85499 0.76764 1.90708 1.25980 1.83167 1.48401 1.47980 1.19827 1.07700 1.57829 1.22839 0.82689 1.04877 0.94183 1.21887 1.03236 0.95168 0.96112 1.21574 0.94141 0.97116 1.01990 1.21293 0.98927 0.93502 0.95397 0.92589 1.22179 0.95438 0.95458 0.96429 0.90171 1.22720 0.99522 0.97195 0.96109 1.20991 0.91158 0.94568 0.87645 1.44912 1.42737 1.22887 1.25065 1.19435 1.11271 0.97185 1.09726 0.90625 1.25680 1.02550 1.00050 0.97547 1.70211 1.49363 1.24740 1.15359 0.85063 0.77977 0.79036 0.77309 1.21084 1.21787 1.19528 1.21720 0.94392 0.87343 0.95407 1.21518 1.00319 0.81624 0.96818 1.22411 0.94919 0.94403 1.09706 1.22373 0.86028 0.96253 1.08218 1.43818 1.06015 1.06830 1.55033 1.22429 1.02814 0.78059 1.04866 0.90519 0.89007 0.91197 0.90042 0.85260 0.87804 0.92801 0.90891 0.90692 0.89437 0.91702 0.96960 0.97998 0.94271 0.97491 0.94824 0.90865 0.92160 0.80857 0.77611 0.89396 0.87052 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.92 9.82 71.24 0.70 -1.22 16 2 C 0.08 1.74 6.88 41.78 0.29 2.03 16 3 C -0.26 -6.42 5.84 -19.04 -0.11 -6.53 16 4 C 0.58 18.31 7.57 86.62 0.66 18.97 16 5 O -0.60 -24.02 14.64 -4.12 -0.06 -24.08 16 6 N -0.60 -16.25 2.97 -822.96 -2.45 -18.69 16 7 C 0.07 1.31 5.66 86.37 0.49 1.80 16 8 C -0.13 -2.08 6.08 30.67 0.19 -1.90 16 9 C -0.11 -2.31 5.04 30.62 0.15 -2.16 16 10 C -0.07 -2.06 1.85 -10.71 -0.02 -2.08 16 11 H 0.06 1.81 8.11 -2.39 -0.02 1.79 16 12 C -0.08 -2.68 2.56 -9.40 -0.02 -2.71 16 13 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 14 C -0.12 -4.45 5.58 31.78 0.18 -4.28 16 15 C 0.18 9.54 5.39 86.68 0.47 10.01 16 16 N -0.63 -35.38 3.40 -691.31 -2.35 -37.73 16 17 C -0.25 -15.03 10.26 84.03 0.86 -14.17 16 18 H 0.08 4.48 7.85 -2.91 -0.02 4.46 16 19 C -0.07 -3.94 5.47 84.86 0.46 -3.48 16 20 N -0.95 -59.83 10.42 21.65 0.23 -59.61 16 21 Si 0.98 48.34 29.56 68.60 2.03 50.37 16 22 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 23 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 24 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 25 C 0.14 6.28 5.74 86.86 0.50 6.78 16 26 C 0.12 3.65 5.40 86.37 0.47 4.11 16 27 C -0.19 -3.04 8.75 23.62 0.21 -2.83 16 28 C 0.00 -0.02 11.34 83.12 0.94 0.92 16 29 N -0.44 -5.77 3.09 -533.21 -1.65 -7.42 16 30 C 0.06 0.24 10.82 127.77 1.38 1.63 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.09 1.21 6.92 -2.39 -0.02 1.19 16 33 H 0.07 1.90 6.41 -2.39 -0.02 1.88 16 34 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.13 1.90 3.12 -2.39 -0.01 1.90 16 36 H 0.10 1.11 8.14 -2.39 -0.02 1.10 16 37 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 38 H 0.07 1.49 7.46 -2.39 -0.02 1.47 16 39 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.09 2.83 8.11 -2.39 -0.02 2.81 16 41 H 0.06 2.34 8.01 -2.39 -0.02 2.32 16 42 H 0.01 0.70 7.38 -2.39 -0.02 0.69 16 43 H 0.00 0.10 7.57 -2.39 -0.02 0.09 16 44 H 0.25 15.07 8.31 -92.70 -0.77 14.30 16 45 H 0.01 0.35 8.04 -2.39 -0.02 0.33 16 46 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 48 H 0.06 2.26 6.44 -2.39 -0.02 2.24 16 49 H 0.17 1.94 6.12 -2.91 -0.02 1.92 16 50 H 0.21 0.52 8.06 -2.91 -0.02 0.50 16 51 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 52 H 0.11 -0.07 8.13 -2.39 -0.02 -0.09 16 53 H 0.09 0.31 6.88 -2.39 -0.02 0.29 16 Total: -1.00 -84.59 401.63 4.42 -80.17 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.89 Total: 12.09 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 7.78 Total: 4.90 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -6.22 Total: -123.45 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.06 Total: -24.08 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 2.03 Total: 50.37 kcal Total: -84.59 4.42 -80.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961248422.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.356 kcal (2) G-P(sol) polarization free energy of solvation -84.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds