Wall clock time and date at job start Wed Apr 1 2020 04:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34849 * 125.89321 * 2 1 4 4 C 1.40894 * 107.41978 * 180.29065 * 3 2 1 5 5 C 1.34854 * 107.41521 * 359.73992 * 4 3 2 6 6 C 1.50705 * 125.89007 * 180.02562 * 5 4 3 7 7 N 1.36340 * 108.21686 * 359.97438 * 5 4 3 8 8 C 1.46509 * 125.63358 * 180.02562 * 7 5 4 9 9 H 1.09007 * 109.46818 * 185.34358 * 8 7 5 10 10 C 1.53000 * 109.46941 * 65.34365 * 8 7 5 11 11 C 1.50696 * 109.47056 * 305.34215 * 8 7 5 12 12 O 1.21280 * 120.00239 * 0.02562 * 11 8 7 13 13 N 1.34776 * 119.99819 * 179.97438 * 11 8 7 14 14 C 1.46509 * 119.99867 * 180.02562 * 13 11 8 15 15 C 1.53139 * 109.39689 * 119.84944 * 14 13 11 16 16 C 1.53699 * 108.87855 * 66.15019 * 15 14 13 17 17 H 1.09001 * 112.10317 * 187.61775 * 16 15 14 18 18 C 1.54608 * 107.83357 * 312.23209 * 16 15 14 19 19 C 1.54313 * 104.75064 * 88.66799 * 18 16 15 20 20 C 1.54607 * 104.75251 * 359.97438 * 19 18 16 21 21 H 1.09001 * 112.69525 * 147.07692 * 20 19 18 22 22 C 1.53147 * 109.43153 * 240.04996 * 14 13 11 23 23 N 1.48297 * 107.27503 * 64.01082 * 16 15 14 24 24 C 1.36938 * 128.21349 * 107.41254 * 23 16 15 25 25 H 1.07999 * 119.99629 * 15.41832 * 24 23 16 26 26 C 1.38807 * 120.00269 * 195.41441 * 24 23 16 27 27 N 1.31615 * 120.00162 * 6.75395 * 26 24 23 28 28 Si 1.86803 * 120.00088 * 186.75338 * 26 24 23 29 29 H 1.48494 * 109.46935 * 89.99832 * 28 26 24 30 30 H 1.48496 * 109.47213 * 210.00203 * 28 26 24 31 31 H 1.48502 * 109.47034 * 329.99905 * 28 26 24 32 32 H 1.08996 * 109.47283 * 274.33204 * 1 2 3 33 33 H 1.08996 * 109.46796 * 34.33734 * 1 2 3 34 34 H 1.09004 * 109.46714 * 154.33321 * 1 2 3 35 35 H 1.07998 * 126.29158 * 0.03348 * 3 2 1 36 36 H 1.07999 * 126.29499 * 179.73235 * 4 3 2 37 37 H 1.08999 * 109.46735 * 268.00805 * 6 5 4 38 38 H 1.08994 * 109.46869 * 28.00835 * 6 5 4 39 39 H 1.08997 * 109.46665 * 148.00752 * 6 5 4 40 40 H 1.08996 * 109.47105 * 304.57777 * 10 8 7 41 41 H 1.09002 * 109.46886 * 64.58150 * 10 8 7 42 42 H 1.09000 * 109.46897 * 184.57488 * 10 8 7 43 43 H 0.96997 * 120.00626 * 0.02562 * 13 11 8 44 44 H 1.08998 * 109.43512 * 359.96124 * 14 13 11 45 45 H 1.09001 * 109.57366 * 185.97229 * 15 14 13 46 46 H 1.09006 * 109.57156 * 306.21170 * 15 14 13 47 47 H 1.08996 * 110.38266 * 207.48421 * 18 16 15 48 48 H 1.08995 * 110.37999 * 329.84650 * 18 16 15 49 49 H 1.09001 * 110.37655 * 241.17596 * 19 18 16 50 50 H 1.09001 * 110.47982 * 118.86362 * 19 18 16 51 51 H 1.08999 * 109.57403 * 53.69076 * 22 14 13 52 52 H 1.09010 * 109.56676 * 174.05142 * 22 14 13 53 53 H 0.97003 * 120.00258 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2976 1.0924 0.0000 4 6 3.6339 0.6460 -0.0068 5 6 3.6090 -0.7023 -0.0049 6 6 4.8134 -1.6082 -0.0098 7 7 2.3063 -1.1045 0.0035 8 6 1.8421 -2.4941 0.0086 9 1 0.7559 -2.5146 -0.0807 10 6 2.2589 -3.1662 1.3184 11 6 2.4556 -3.2330 -1.1527 12 8 3.2071 -2.6560 -1.9098 13 7 2.1701 -4.5354 -1.3493 14 6 2.7670 -5.2539 -2.4780 15 6 3.6027 -6.4241 -1.9512 16 6 2.6651 -7.4471 -1.2903 17 1 3.2151 -8.2377 -0.7800 18 6 1.7141 -6.6765 -0.3457 19 6 0.5147 -6.2813 -1.2325 20 6 0.8540 -6.8495 -2.6298 21 1 -0.0312 -7.1671 -3.1809 22 6 1.6563 -5.7825 -3.3903 23 7 1.7750 -7.9782 -2.3510 24 6 1.7984 -9.2167 -2.9348 25 1 2.3520 -10.0209 -2.4731 26 6 1.1104 -9.4385 -4.1198 27 7 0.5470 -8.4311 -4.7522 28 14 0.9842 -11.1669 -4.8171 29 1 -0.2298 -11.8307 -4.2779 30 1 0.8945 -11.0980 -6.2977 31 1 2.1877 -11.9460 -4.4298 32 1 -0.3633 0.0776 1.0247 33 1 -0.3633 0.8486 -0.5797 34 1 -0.3633 -0.9263 -0.4451 35 1 1.9672 2.1206 0.0005 36 1 4.5160 1.2690 -0.0127 37 1 5.0770 -1.8565 -1.0379 38 1 5.6515 -1.1008 0.4678 39 1 4.5826 -2.5223 0.5371 40 1 3.3374 -3.0740 1.4469 41 1 1.7508 -2.6825 2.1527 42 1 1.9854 -4.2209 1.2886 43 1 1.5694 -4.9971 -0.7436 44 1 3.4075 -4.5757 -3.0418 45 1 4.1327 -6.8959 -2.7786 46 1 4.3218 -6.0585 -1.2182 47 1 1.3867 -7.3200 0.4709 48 1 2.2067 -5.7864 0.0454 49 1 0.4172 -5.1966 -1.2776 50 1 -0.4040 -6.7288 -0.8531 51 1 0.9961 -4.9630 -3.6744 52 1 2.0972 -6.2249 -4.2837 53 1 0.0659 -8.5861 -5.5801 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021467040.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:36 Heat of formation + Delta-G solvation = 101.699467 kcal Electronic energy + Delta-G solvation = -32951.219110 eV Core-core repulsion = 29019.926923 eV Total energy + Delta-G solvation = -3931.292187 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 10.78 seconds Orbital eigenvalues (eV) -42.91399 -42.14474 -39.69796 -35.92716 -35.31247 -33.94029 -33.45430 -32.71893 -31.95183 -30.88296 -30.18102 -29.79260 -26.72803 -25.50908 -24.94930 -24.86387 -23.28264 -21.91015 -21.35995 -21.20395 -21.02748 -19.71087 -18.78812 -18.18171 -17.33980 -16.81368 -16.51548 -16.22248 -16.02554 -15.62311 -15.26352 -14.74056 -14.63925 -14.58844 -14.51664 -14.30746 -14.16958 -14.02886 -13.90746 -13.81536 -13.37563 -13.28661 -13.25235 -13.14461 -13.10524 -12.91575 -12.80632 -12.71176 -12.64113 -12.49923 -12.40435 -12.04913 -11.95408 -11.94909 -11.74630 -11.44616 -11.18283 -11.03797 -10.81490 -10.56705 -9.68358 -9.48362 -8.75306 -8.60879 -7.82410 -5.18487 1.26144 1.47630 1.48634 1.52958 1.56155 1.84498 2.15415 2.33404 2.50711 3.34694 3.52405 3.54130 3.74282 3.79954 3.89658 3.92747 3.96778 4.15018 4.20988 4.24163 4.26092 4.31967 4.38423 4.44477 4.47025 4.57535 4.61798 4.68469 4.73082 4.77457 4.82975 4.83991 4.93397 4.94352 4.96827 4.99823 5.08632 5.11493 5.13091 5.24559 5.27865 5.28243 5.42312 5.43970 5.54462 5.56153 5.56364 5.77644 5.84565 6.24278 6.29022 6.38575 6.43870 6.61168 7.10541 7.19820 7.77233 8.56031 9.27419 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.023985 B = 0.002880 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.115095 B = 9718.620399 C = 9907.519558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.003 4.003 3 C -0.214 4.214 4 C -0.230 4.230 5 C 0.031 3.969 6 C -0.081 4.081 7 N -0.428 5.428 8 C 0.110 3.890 9 H 0.142 0.858 10 C -0.164 4.164 11 C 0.484 3.516 12 O -0.565 6.565 13 N -0.718 5.718 14 C 0.158 3.842 15 C -0.129 4.129 16 C 0.141 3.859 17 H 0.074 0.926 18 C -0.149 4.149 19 C -0.163 4.163 20 C 0.173 3.827 21 H 0.074 0.926 22 C -0.114 4.114 23 N -0.604 5.604 24 C -0.229 4.229 25 H 0.077 0.923 26 C -0.057 4.057 27 N -0.936 5.936 28 Si 0.968 3.032 29 H -0.288 1.288 30 H -0.301 1.301 31 H -0.273 1.273 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.145 0.855 36 H 0.138 0.862 37 H 0.058 0.942 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.435 0.565 44 H 0.066 0.934 45 H 0.046 0.954 46 H 0.075 0.925 47 H 0.083 0.917 48 H 0.107 0.893 49 H 0.096 0.904 50 H 0.070 0.930 51 H 0.042 0.958 52 H 0.040 0.960 53 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.423 13.290 16.068 20.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.113 4.113 3 C -0.238 4.238 4 C -0.254 4.254 5 C -0.080 4.080 6 C -0.138 4.138 7 N -0.106 5.106 8 C 0.004 3.996 9 H 0.159 0.841 10 C -0.222 4.222 11 C 0.270 3.730 12 O -0.444 6.444 13 N -0.393 5.393 14 C 0.053 3.947 15 C -0.170 4.170 16 C 0.034 3.966 17 H 0.093 0.907 18 C -0.188 4.188 19 C -0.203 4.203 20 C 0.066 3.934 21 H 0.092 0.908 22 C -0.154 4.154 23 N -0.326 5.326 24 C -0.358 4.358 25 H 0.095 0.905 26 C -0.252 4.252 27 N -0.584 5.584 28 Si 0.798 3.202 29 H -0.215 1.215 30 H -0.228 1.228 31 H -0.198 1.198 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.163 0.837 36 H 0.155 0.845 37 H 0.076 0.924 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.113 0.887 42 H 0.117 0.883 43 H 0.297 0.703 44 H 0.084 0.916 45 H 0.065 0.935 46 H 0.094 0.906 47 H 0.101 0.899 48 H 0.125 0.875 49 H 0.114 0.886 50 H 0.088 0.912 51 H 0.060 0.940 52 H 0.059 0.941 53 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.714 13.123 15.390 20.238 hybrid contribution -0.108 -1.088 -1.363 1.747 sum 0.606 12.035 14.027 18.493 Atomic orbital electron populations 1.20398 0.86202 1.03496 1.03812 1.20829 0.94768 0.85457 1.10258 1.20849 0.92761 0.98108 1.12081 1.20847 0.97984 0.93233 1.13327 1.20435 0.85203 0.94681 1.07726 1.20465 0.93552 0.97650 1.02108 1.43711 1.05561 1.04389 1.56954 1.21441 1.02056 0.80460 0.95646 0.84085 1.22351 1.03767 1.02121 0.93914 1.21285 0.81733 0.83513 0.86462 1.90705 1.37588 1.68347 1.47782 1.48850 1.49388 1.09825 1.31197 1.20705 0.94345 0.92408 0.87247 1.22400 0.97872 0.96204 1.00502 1.21790 0.91327 0.93748 0.89695 0.90748 1.23228 0.96064 1.01217 0.98318 1.23311 0.98849 1.00852 0.97256 1.21436 0.93582 0.85842 0.92517 0.90793 1.22177 0.97332 0.97778 0.98150 1.45373 1.33523 1.10880 1.42803 1.19284 1.27487 0.86751 1.02310 0.90544 1.25514 1.02215 1.00353 0.97075 1.70019 1.40578 1.29977 1.17817 0.85238 0.77854 0.80488 0.76665 1.21547 1.22828 1.19802 0.89259 0.89536 0.91686 0.83703 0.84460 0.92351 0.89616 0.91529 0.91072 0.88705 0.88294 0.70256 0.91550 0.93494 0.90613 0.89850 0.87539 0.88594 0.91176 0.93972 0.94149 0.94615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.27 10.06 71.24 0.72 -0.55 16 2 C 0.00 -0.07 6.89 41.08 0.28 0.21 16 3 C -0.21 -5.31 10.76 22.14 0.24 -5.07 16 4 C -0.23 -6.17 10.77 22.14 0.24 -5.93 16 5 C 0.03 0.84 5.75 41.08 0.24 1.07 16 6 C -0.08 -1.98 8.65 71.24 0.62 -1.37 16 7 N -0.43 -10.58 2.45 -477.17 -1.17 -11.75 16 8 C 0.11 2.24 3.17 44.24 0.14 2.38 16 9 H 0.14 2.22 6.51 -2.38 -0.02 2.20 16 10 C -0.16 -2.32 9.22 71.98 0.66 -1.66 16 11 C 0.48 13.38 6.51 87.66 0.57 13.95 16 12 O -0.57 -20.46 12.50 -3.03 -0.04 -20.50 16 13 N -0.72 -19.22 2.64 -442.07 -1.17 -20.39 16 14 C 0.16 5.49 3.15 45.09 0.14 5.63 16 15 C -0.13 -4.39 5.49 30.88 0.17 -4.22 16 16 C 0.14 4.92 4.32 45.43 0.20 5.11 16 17 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 18 C -0.15 -3.86 5.76 31.59 0.18 -3.68 16 19 C -0.16 -4.88 5.76 31.59 0.18 -4.70 16 20 C 0.17 7.35 3.16 45.41 0.14 7.49 16 21 H 0.07 3.79 6.23 -2.39 -0.01 3.77 16 22 C -0.11 -4.75 5.43 30.86 0.17 -4.58 16 23 N -0.60 -27.43 2.82 -637.25 -1.80 -29.23 16 24 C -0.23 -11.88 10.39 84.03 0.87 -11.01 16 25 H 0.08 3.85 7.84 -2.91 -0.02 3.82 16 26 C -0.06 -3.08 5.44 84.86 0.46 -2.62 16 27 N -0.94 -52.83 10.60 21.65 0.23 -52.60 16 28 Si 0.97 44.11 29.56 68.60 2.03 46.14 16 29 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 30 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 31 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 32 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.06 0.94 6.83 -2.39 -0.02 0.92 16 35 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 36 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 37 H 0.06 1.74 6.78 -2.39 -0.02 1.73 16 38 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.07 1.47 5.11 -2.39 -0.01 1.46 16 40 H 0.07 1.14 5.30 -2.39 -0.01 1.12 16 41 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.10 1.03 6.24 -2.39 -0.01 1.01 16 43 H 0.44 9.81 1.47 -116.46 -0.17 9.64 16 44 H 0.07 2.57 6.90 -2.39 -0.02 2.55 16 45 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 47 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.11 2.15 3.92 -2.39 -0.01 2.14 16 49 H 0.10 2.43 5.27 -2.39 -0.01 2.42 16 50 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 51 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 52 H 0.04 2.02 8.09 -2.38 -0.02 2.00 16 53 H 0.24 13.70 8.31 -92.71 -0.77 12.93 16 Total: -1.00 -68.93 384.90 5.06 -63.87 By element: Atomic # 1 Polarization: 33.25 SS G_CDS: 0.75 Total: 34.00 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: 6.22 Total: -9.54 kcal Atomic # 7 Polarization: -110.06 SS G_CDS: -3.90 Total: -113.97 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.04 Total: -20.50 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -68.93 5.06 -63.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021467040.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.565 kcal (2) G-P(sol) polarization free energy of solvation -68.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.78 seconds