Wall clock time and date at job start Wed Apr 1 2020 04:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38233 * 119.61951 * 2 1 4 4 C 1.38628 * 119.16049 * 180.02562 * 3 2 1 5 5 C 1.38676 * 118.42349 * 359.97438 * 4 3 2 6 6 C 1.50691 * 120.42078 * 180.02562 * 5 4 3 7 7 C 1.50693 * 109.47383 * 89.99849 * 6 5 4 8 8 O 1.21280 * 120.00345 * 359.97438 * 7 6 5 9 9 N 1.34784 * 120.00004 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99710 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.46923 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.69810 * 299.06516 * 11 10 9 13 13 C 1.52764 * 109.50846 * 178.94996 * 11 10 9 14 14 C 1.53040 * 109.38369 * 185.70306 * 13 11 10 15 15 C 1.53048 * 109.53695 * 61.23823 * 14 13 11 16 16 C 1.52996 * 109.49674 * 178.68444 * 15 14 13 17 17 C 1.53000 * 109.51914 * 58.60405 * 15 14 13 18 18 C 1.53191 * 109.31251 * 298.64034 * 15 14 13 19 19 N 1.46916 * 108.78033 * 54.62924 * 18 15 14 20 20 C 1.36938 * 120.63160 * 126.36404 * 19 18 15 21 21 H 1.08001 * 120.00592 * 210.43891 * 20 19 18 22 22 C 1.38812 * 119.99847 * 30.44480 * 20 19 18 23 23 N 1.31626 * 119.99951 * 24.36589 * 22 20 19 24 24 Si 1.86800 * 120.00380 * 204.09143 * 22 20 19 25 25 H 1.48504 * 109.46779 * 89.99927 * 24 22 20 26 26 H 1.48499 * 109.47302 * 210.00033 * 24 22 20 27 27 H 1.48497 * 109.46900 * 330.00079 * 24 22 20 28 28 C 1.38183 * 119.15888 * 0.27072 * 5 4 3 29 29 N 1.31853 * 119.61711 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.46952 * 89.99986 * 1 2 3 31 31 H 1.08996 * 109.47467 * 210.00456 * 1 2 3 32 32 H 1.08998 * 109.47428 * 330.00628 * 1 2 3 33 33 H 1.07996 * 120.41666 * 359.97438 * 3 2 1 34 34 H 1.07996 * 120.78685 * 179.97438 * 4 3 2 35 35 H 1.09007 * 109.46877 * 329.99721 * 6 5 4 36 36 H 1.09001 * 109.47321 * 209.99907 * 6 5 4 37 37 H 0.96997 * 119.99830 * 359.97438 * 9 7 6 38 38 H 1.08998 * 109.47393 * 60.00249 * 10 9 7 39 39 H 1.09001 * 109.47060 * 299.99474 * 10 9 7 40 40 H 1.08999 * 109.56689 * 65.67277 * 13 11 10 41 41 H 1.08994 * 109.36106 * 305.61708 * 13 11 10 42 42 H 1.09007 * 109.46226 * 301.22456 * 14 13 11 43 43 H 1.08998 * 109.46376 * 181.26356 * 14 13 11 44 44 H 1.09006 * 109.46950 * 179.84139 * 16 15 14 45 45 H 1.09001 * 109.47446 * 299.83574 * 16 15 14 46 46 H 1.09000 * 109.47302 * 59.84370 * 16 15 14 47 47 H 1.08999 * 109.47457 * 300.14419 * 17 15 14 48 48 H 1.08999 * 109.47576 * 60.14625 * 17 15 14 49 49 H 1.09005 * 109.46846 * 180.14588 * 17 15 14 50 50 H 1.09005 * 109.58192 * 294.84158 * 18 15 14 51 51 H 1.09004 * 109.70366 * 174.49295 * 18 15 14 52 52 H 0.96996 * 119.99847 * 5.50139 * 23 22 20 53 53 H 1.08000 * 119.61318 * 179.70343 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2017 0.0000 4 6 3.5764 1.1906 -0.0005 5 6 4.2267 -0.0343 -0.0005 6 6 5.7322 -0.0988 -0.0005 7 6 6.2341 -0.1203 1.4202 8 8 5.4468 -0.0860 2.3421 9 7 7.5581 -0.1766 1.6664 10 6 8.0460 -0.1969 3.0476 11 6 9.5746 -0.2613 3.0476 12 1 9.9039 -1.1730 2.5492 13 6 10.0855 -0.2561 4.4873 14 6 11.6138 -0.1770 4.4836 15 6 12.0574 1.1222 3.8072 16 6 13.5843 1.2160 3.8332 17 6 11.4596 2.3169 4.5530 18 6 11.5693 1.1296 2.3551 19 7 10.1170 0.9085 2.3432 20 6 9.2839 1.7793 1.6929 21 1 8.2772 1.9339 2.0522 22 6 9.7333 2.4634 0.5717 23 7 10.7181 1.9703 -0.1492 24 14 8.9356 4.0798 0.0816 25 1 9.6451 5.2031 0.7450 26 1 9.0160 4.2448 -1.3920 27 1 7.5114 4.0764 0.5024 28 6 3.4766 -1.1948 -0.0057 29 7 2.1586 -1.1463 -0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3634 0.8900 0.5137 33 1 1.6508 2.1373 -0.0004 34 1 4.1366 2.1139 -0.0010 35 1 6.1333 0.7748 -0.5144 36 1 6.0571 -1.0036 -0.5143 37 1 8.1878 -0.2036 0.9291 38 1 7.6452 -1.0704 3.5618 39 1 7.7209 0.7080 3.5611 40 1 9.7698 -1.1704 4.9899 41 1 9.6777 0.6076 5.0123 42 1 12.0203 -1.0280 3.9371 43 1 11.9809 -0.1958 5.5098 44 1 13.8999 2.1401 3.3488 45 1 13.9311 1.2108 4.8666 46 1 14.0098 0.3641 3.3028 47 1 10.3719 2.2491 4.5351 48 1 11.8071 2.3113 5.5861 49 1 11.7739 3.2416 4.0689 50 1 12.0647 0.3336 1.7991 51 1 11.7963 2.0919 1.8960 52 1 11.0762 1.0923 0.0551 53 1 3.9754 -2.1526 -0.0105 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099338951.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:20 Heat of formation + Delta-G solvation = -14.684311 kcal Electronic energy + Delta-G solvation = -31490.843067 eV Core-core repulsion = 27554.504100 eV Total energy + Delta-G solvation = -3936.338966 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.47589 -40.74695 -39.90305 -36.72652 -35.24626 -34.97290 -33.73653 -33.23029 -31.55871 -31.01007 -28.92196 -28.11472 -27.25637 -26.89267 -24.87541 -24.41266 -23.78317 -22.60704 -21.83573 -21.11522 -19.49661 -18.98839 -17.76880 -17.69969 -17.39630 -17.03513 -16.76810 -16.03390 -15.83540 -15.67908 -15.55664 -15.44993 -15.27898 -14.84829 -14.81888 -14.42742 -14.18871 -14.08429 -13.84181 -13.65552 -13.46742 -13.36091 -13.19449 -13.03796 -12.88962 -12.80354 -12.69333 -12.54487 -12.45913 -12.32573 -12.22840 -11.95082 -11.76797 -11.64627 -11.37937 -11.10673 -10.99488 -10.83193 -10.65872 -10.43837 -10.38328 -9.82593 -9.70341 -8.74891 -8.04398 -5.25369 0.12089 0.32958 1.58344 1.60935 1.74051 1.78458 2.39123 2.65639 2.87964 3.30657 3.38204 3.52394 3.71053 3.81609 3.91223 3.93829 4.00997 4.03814 4.06946 4.10831 4.23441 4.34682 4.38935 4.44449 4.55497 4.58296 4.66268 4.70323 4.73152 4.76943 4.80556 4.82941 4.86272 4.87771 4.97211 5.00674 5.05554 5.08073 5.14557 5.16936 5.19607 5.24664 5.28706 5.33907 5.42287 5.47041 5.56996 5.65383 5.72991 5.79023 6.07296 6.53858 6.74429 7.01636 7.16329 7.37162 7.89281 8.36549 9.16970 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.015100 B = 0.002984 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.799606 B = 9380.492513 C =10521.775712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.104 3.896 3 C -0.172 4.172 4 C -0.076 4.076 5 C -0.125 4.125 6 C -0.092 4.092 7 C 0.509 3.491 8 O -0.593 6.593 9 N -0.692 5.692 10 C 0.144 3.856 11 C 0.164 3.836 12 H 0.030 0.970 13 C -0.126 4.126 14 C -0.090 4.090 15 C -0.087 4.087 16 C -0.130 4.130 17 C -0.118 4.118 18 C 0.175 3.825 19 N -0.601 5.601 20 C -0.319 4.319 21 H 0.050 0.950 22 C -0.057 4.057 23 N -0.941 5.941 24 Si 1.087 2.913 25 H -0.297 1.297 26 H -0.295 1.295 27 H -0.281 1.281 28 C 0.102 3.898 29 N -0.508 5.508 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.161 0.839 34 H 0.137 0.863 35 H 0.110 0.890 36 H 0.128 0.872 37 H 0.411 0.589 38 H 0.066 0.934 39 H 0.039 0.961 40 H 0.078 0.922 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.074 0.926 44 H 0.042 0.958 45 H 0.070 0.930 46 H 0.053 0.947 47 H 0.045 0.955 48 H 0.061 0.939 49 H 0.029 0.971 50 H 0.001 0.999 51 H 0.038 0.962 52 H 0.259 0.741 53 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.682 -4.343 2.883 9.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.033 4.033 3 C -0.191 4.191 4 C -0.102 4.102 5 C -0.128 4.128 6 C -0.132 4.132 7 C 0.296 3.704 8 O -0.476 6.476 9 N -0.341 5.341 10 C 0.020 3.980 11 C 0.058 3.942 12 H 0.048 0.952 13 C -0.165 4.165 14 C -0.128 4.128 15 C -0.088 4.088 16 C -0.188 4.188 17 C -0.175 4.175 18 C 0.050 3.950 19 N -0.326 5.326 20 C -0.450 4.450 21 H 0.067 0.933 22 C -0.255 4.255 23 N -0.584 5.584 24 Si 0.916 3.084 25 H -0.225 1.225 26 H -0.222 1.222 27 H -0.207 1.207 28 C -0.054 4.054 29 N -0.218 5.218 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.179 0.821 34 H 0.155 0.845 35 H 0.128 0.872 36 H 0.146 0.854 37 H 0.248 0.752 38 H 0.084 0.916 39 H 0.057 0.943 40 H 0.096 0.904 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.093 0.907 44 H 0.061 0.939 45 H 0.089 0.911 46 H 0.072 0.928 47 H 0.064 0.936 48 H 0.080 0.920 49 H 0.048 0.952 50 H 0.019 0.981 51 H 0.057 0.943 52 H 0.069 0.931 53 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.663 -3.834 2.457 9.787 hybrid contribution 1.107 -0.146 0.553 1.245 sum -7.557 -3.980 3.009 9.055 Atomic orbital electron populations 1.20764 0.86523 1.04166 1.04040 1.21891 0.98689 0.88249 0.94483 1.22220 0.94293 1.00349 1.02238 1.21747 0.95413 0.98116 0.94883 1.20407 0.95594 0.94874 1.01898 1.20568 0.91720 1.07151 0.93799 1.20840 0.82182 0.75694 0.91668 1.90638 1.56382 1.52872 1.47670 1.46006 1.06572 1.72018 1.09526 1.21144 0.93885 0.99837 0.83155 1.20736 0.90636 0.89667 0.93190 0.95224 1.21882 0.96613 1.01861 0.96166 1.21387 0.94868 0.96135 1.00405 1.21057 0.95442 0.95919 0.96405 1.21735 0.94000 1.01077 1.02011 1.21623 1.00568 0.96438 0.98892 1.20800 0.83633 0.97465 0.93151 1.44230 1.02112 1.25419 1.60846 1.19933 0.97550 1.20330 1.07141 0.93271 1.26351 1.00225 1.06060 0.92872 1.70840 1.30086 1.19081 1.38368 0.83171 0.75244 0.74593 0.75375 1.22517 1.22155 1.20661 1.22769 0.89406 0.98375 0.94899 1.67536 1.09973 1.30446 1.13829 0.89060 0.90934 0.88824 0.82146 0.84494 0.87172 0.85390 0.75181 0.91604 0.94291 0.90368 0.92406 0.92552 0.90707 0.93916 0.91125 0.92820 0.93618 0.92043 0.95160 0.98101 0.94307 0.93076 0.81894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.64 10.17 71.23 0.72 -0.91 16 2 C 0.10 2.62 6.78 42.55 0.29 2.91 16 3 C -0.17 -4.14 9.74 22.36 0.22 -3.92 16 4 C -0.08 -2.11 9.86 22.47 0.22 -1.89 16 5 C -0.13 -3.67 4.39 -19.78 -0.09 -3.75 16 6 C -0.09 -2.62 5.86 29.10 0.17 -2.45 16 7 C 0.51 18.32 7.82 87.65 0.69 19.00 16 8 O -0.59 -25.36 16.03 -3.03 -0.05 -25.41 16 9 N -0.69 -25.18 3.79 -463.06 -1.75 -26.93 16 10 C 0.14 5.26 4.43 86.38 0.38 5.64 16 11 C 0.16 5.84 3.00 44.83 0.13 5.98 16 12 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 13 C -0.13 -3.77 5.00 30.53 0.15 -3.62 16 14 C -0.09 -2.55 4.71 30.62 0.14 -2.40 16 15 C -0.09 -2.84 0.77 -52.10 -0.04 -2.88 16 16 C -0.13 -3.66 8.48 71.98 0.61 -3.05 16 17 C -0.12 -3.95 7.99 71.98 0.58 -3.37 16 18 C 0.18 7.35 3.40 86.36 0.29 7.64 16 19 N -0.60 -25.54 2.25 -676.03 -1.52 -27.06 16 20 C -0.32 -15.22 6.85 84.03 0.58 -14.65 16 21 H 0.05 2.48 5.87 -2.91 -0.02 2.47 16 22 C -0.06 -2.86 4.68 84.86 0.40 -2.46 16 23 N -0.94 -51.35 12.51 21.65 0.27 -51.08 16 24 Si 1.09 48.28 29.98 68.60 2.06 50.33 16 25 H -0.30 -13.31 7.11 99.48 0.71 -12.60 16 26 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 27 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 28 C 0.10 2.95 10.86 84.67 0.92 3.87 16 29 N -0.51 -14.92 10.27 -183.88 -1.89 -16.81 16 30 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.09 1.16 8.08 -2.39 -0.02 1.14 16 33 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 34 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 35 H 0.11 3.08 8.10 -2.38 -0.02 3.06 16 36 H 0.13 2.89 8.09 -2.39 -0.02 2.87 16 37 H 0.41 15.50 7.32 -92.71 -0.68 14.83 16 38 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.04 1.62 7.47 -2.39 -0.02 1.60 16 40 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.06 1.86 6.33 -2.39 -0.02 1.84 16 42 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 43 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 45 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.04 1.71 5.97 -2.39 -0.01 1.70 16 48 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 49 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 50 H 0.00 0.05 7.86 -2.38 -0.02 0.03 16 51 H 0.04 1.92 6.48 -2.38 -0.02 1.90 16 52 H 0.26 14.28 6.77 -92.71 -0.63 13.65 16 53 H 0.16 4.03 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -63.93 411.19 3.84 -60.09 By element: Atomic # 1 Polarization: 36.82 SS G_CDS: 0.35 Total: 37.17 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 6.37 Total: -0.31 kcal Atomic # 7 Polarization: -116.98 SS G_CDS: -4.89 Total: -121.87 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.05 Total: -25.41 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 2.06 Total: 50.33 kcal Total: -63.93 3.84 -60.09 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099338951.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.410 kcal (2) G-P(sol) polarization free energy of solvation -63.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds