Wall clock time and date at job start Wed Apr 1 2020 03:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38356 * 119.46056 * 2 1 4 4 C 1.38349 * 119.30146 * 180.02562 * 3 2 1 5 5 C 1.40024 * 118.28892 * 359.97438 * 4 3 2 6 6 C 1.47847 * 120.55671 * 180.02562 * 5 4 3 7 7 O 1.21552 * 119.99758 * 129.07093 * 6 5 4 8 8 N 1.34777 * 119.99918 * 309.06456 * 6 5 4 9 9 C 1.47020 * 125.64832 * 5.09486 * 8 6 5 10 10 C 1.54327 * 107.26956 * 181.09023 * 9 8 6 11 11 C 1.55157 * 102.94114 * 22.19057 * 10 9 8 12 12 H 1.09000 * 111.03918 * 82.58716 * 11 10 9 13 13 C 1.53008 * 111.00286 * 206.42279 * 11 10 9 14 14 H 1.09005 * 109.46578 * 56.09461 * 13 11 10 15 15 C 1.53002 * 109.47143 * 176.09149 * 13 11 10 16 16 N 1.46494 * 109.47171 * 296.09794 * 13 11 10 17 17 C 1.36937 * 119.99998 * 154.99979 * 16 13 11 18 18 H 1.07996 * 120.00114 * 359.97438 * 17 16 13 19 19 C 1.38818 * 119.99604 * 179.97438 * 17 16 13 20 20 N 1.31624 * 119.99375 * 180.02562 * 19 17 16 21 21 Si 1.86792 * 120.00454 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.47180 * 89.99987 * 21 19 17 23 23 H 1.48501 * 109.47476 * 210.00327 * 21 19 17 24 24 H 1.48503 * 109.46868 * 330.00146 * 21 19 17 25 25 C 1.47425 * 125.64489 * 185.12543 * 8 6 5 26 26 C 1.39513 * 118.88213 * 0.27868 * 5 4 3 27 27 C 1.50703 * 119.71630 * 179.72171 * 26 5 4 28 28 C 1.53000 * 109.46989 * 124.07707 * 27 26 5 29 29 C 1.53003 * 109.47374 * 244.07434 * 27 26 5 30 30 N 1.31699 * 120.56677 * 359.40602 * 26 5 4 31 31 H 1.08994 * 109.47165 * 89.99650 * 1 2 3 32 32 H 1.08992 * 109.47159 * 210.00369 * 1 2 3 33 33 H 1.09003 * 109.47006 * 329.99999 * 1 2 3 34 34 H 1.08003 * 120.34823 * 0.02655 * 3 2 1 35 35 H 1.08006 * 120.85583 * 179.97438 * 4 3 2 36 36 H 1.09006 * 109.88023 * 300.49958 * 9 8 6 37 37 H 1.08992 * 109.88490 * 61.51854 * 9 8 6 38 38 H 1.08997 * 110.72137 * 263.82420 * 10 9 8 39 39 H 1.09004 * 110.71838 * 140.54984 * 10 9 8 40 40 H 1.09000 * 109.46782 * 54.87015 * 15 13 11 41 41 H 1.08996 * 109.47081 * 294.87010 * 15 13 11 42 42 H 1.08994 * 109.47037 * 174.86250 * 15 13 11 43 43 H 0.97004 * 119.99685 * 334.99552 * 16 13 11 44 44 H 0.97000 * 119.99670 * 180.02562 * 20 19 17 45 45 H 1.09001 * 110.36912 * 37.00528 * 25 8 6 46 46 H 1.08998 * 110.46343 * 274.72283 * 25 8 6 47 47 H 1.08996 * 109.46968 * 4.07435 * 27 26 5 48 48 H 1.08996 * 109.47488 * 60.00046 * 28 27 26 49 49 H 1.09000 * 109.47018 * 179.97438 * 28 27 26 50 50 H 1.08997 * 109.47015 * 300.00039 * 28 27 26 51 51 H 1.09000 * 109.46640 * 59.99991 * 29 27 26 52 52 H 1.09000 * 109.47531 * 180.02562 * 29 27 26 53 53 H 1.09003 * 109.47217 * 300.00613 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1875 1.2047 0.0000 4 6 3.5710 1.2008 -0.0005 5 6 4.2312 -0.0340 -0.0005 6 6 5.7083 -0.0966 -0.0005 7 8 6.2874 -0.7853 0.8168 8 7 6.4127 0.6097 -0.9068 9 6 5.8503 1.5594 -1.8781 10 6 7.0239 2.1022 -2.7204 11 6 8.1083 1.0051 -2.5533 12 1 7.9401 0.1801 -3.2454 13 6 9.5113 1.5891 -2.7312 14 1 9.6546 2.4105 -2.0291 15 6 10.5540 0.5018 -2.4638 16 7 9.6635 2.0855 -4.1011 17 6 10.5717 3.0732 -4.3745 18 1 11.1755 3.4866 -3.5802 19 6 10.7162 3.5431 -5.6727 20 7 11.5895 4.4922 -5.9355 21 14 9.6725 2.8277 -7.0467 22 1 8.4141 3.6068 -7.1695 23 1 10.4237 2.8958 -8.3259 24 1 9.3497 1.4116 -6.7370 25 6 7.8748 0.5576 -1.0887 26 6 3.4716 -1.2042 -0.0059 27 6 4.1627 -2.5434 -0.0123 28 6 3.6785 -3.3729 1.1787 29 6 3.8359 -3.2798 -1.3131 30 7 2.1558 -1.1487 0.0008 31 1 -0.3633 0.0001 -1.0276 32 1 -0.3633 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.6444 2.1382 0.0004 35 1 4.1275 2.1265 -0.0010 36 1 5.1354 1.0493 -2.5238 37 1 5.3577 2.3780 -1.3536 38 1 7.3749 3.0549 -2.3240 39 1 6.7342 2.2018 -3.7665 40 1 10.3547 -0.3579 -3.1036 41 1 10.5012 0.1969 -1.4187 42 1 11.5488 0.8918 -2.6788 43 1 9.1209 1.7144 -4.8145 44 1 11.6903 4.8208 -6.8426 45 1 8.2396 -0.4587 -0.9399 46 1 8.3692 1.2421 -0.3995 47 1 5.2402 -2.3965 0.0612 48 1 2.6010 -3.5198 1.1052 49 1 4.1781 -4.3417 1.1738 50 1 3.9113 -2.8483 2.1053 51 1 4.1809 -2.6888 -2.1616 52 1 4.3354 -4.2486 -1.3176 53 1 2.7584 -3.4266 -1.3867 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569817134.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:06 Heat of formation + Delta-G solvation = -17.668642 kcal Electronic energy + Delta-G solvation = -30992.141137 eV Core-core repulsion = 27055.672760 eV Total energy + Delta-G solvation = -3936.468377 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.08616 -40.68193 -39.09243 -37.05684 -36.54280 -34.55793 -33.91665 -32.40431 -32.11694 -31.15532 -29.42067 -28.60193 -28.09027 -26.23862 -25.21020 -24.63119 -23.28641 -22.75874 -21.53450 -21.33643 -20.74837 -19.57675 -18.48628 -17.97752 -17.18358 -16.95253 -16.78473 -16.47339 -15.76474 -15.59495 -15.57992 -15.25775 -15.01848 -14.85752 -14.70062 -14.39170 -14.18549 -14.14487 -13.99948 -13.96530 -13.51827 -13.47233 -13.41843 -13.22914 -13.03725 -12.96832 -12.93887 -12.83612 -12.38553 -12.34196 -12.15386 -12.04634 -11.91689 -11.87625 -11.73365 -11.68979 -11.43382 -11.19197 -10.95226 -10.86986 -10.44766 -9.90241 -9.71436 -9.28661 -7.97762 -5.30474 -0.28234 0.17296 1.40411 1.43718 1.46762 1.51070 1.82629 2.52187 2.63365 3.06918 3.22005 3.33980 3.43566 3.58439 3.59871 3.66657 3.80894 3.98069 4.04134 4.13953 4.17594 4.22716 4.26048 4.32738 4.35784 4.45075 4.55576 4.60433 4.67581 4.70223 4.74349 4.74561 4.80453 4.81354 4.84622 4.90103 4.92313 4.97571 5.01462 5.06080 5.07589 5.11780 5.13310 5.18512 5.26290 5.28067 5.35114 5.37062 5.56936 5.65004 5.82648 6.25975 6.33234 6.89329 6.92680 7.12877 7.88726 8.08291 9.24030 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.015367 B = 0.002550 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.661791 B =10977.793246 C =11611.761150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.138 3.862 3 C -0.174 4.174 4 C -0.041 4.041 5 C -0.202 4.202 6 C 0.581 3.419 7 O -0.566 6.566 8 N -0.608 5.608 9 C 0.102 3.898 10 C -0.117 4.117 11 C -0.096 4.096 12 H 0.086 0.914 13 C 0.187 3.813 14 H 0.049 0.951 15 C -0.163 4.163 16 N -0.746 5.746 17 C -0.219 4.219 18 H 0.056 0.944 19 C -0.066 4.066 20 N -0.987 5.987 21 Si 0.952 3.048 22 H -0.274 1.274 23 H -0.304 1.304 24 H -0.252 1.252 25 C 0.120 3.880 26 C 0.178 3.822 27 C -0.064 4.064 28 C -0.126 4.126 29 C -0.132 4.132 30 N -0.496 5.496 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.176 0.824 35 H 0.158 0.842 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.051 0.949 41 H 0.067 0.933 42 H 0.033 0.967 43 H 0.365 0.635 44 H 0.256 0.744 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.066 0.934 49 H 0.071 0.929 50 H 0.040 0.960 51 H 0.044 0.956 52 H 0.072 0.928 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.883 -10.992 12.572 30.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.000 4.000 3 C -0.193 4.193 4 C -0.067 4.067 5 C -0.207 4.207 6 C 0.370 3.630 7 O -0.447 6.447 8 N -0.340 5.340 9 C -0.020 4.020 10 C -0.155 4.155 11 C -0.116 4.116 12 H 0.104 0.896 13 C 0.079 3.921 14 H 0.067 0.933 15 C -0.222 4.222 16 N -0.389 5.389 17 C -0.351 4.351 18 H 0.074 0.926 19 C -0.257 4.257 20 N -0.638 5.638 21 Si 0.780 3.220 22 H -0.200 1.200 23 H -0.231 1.231 24 H -0.177 1.177 25 C -0.003 4.003 26 C 0.039 3.961 27 C -0.083 4.083 28 C -0.184 4.184 29 C -0.189 4.189 30 N -0.205 5.205 31 H 0.111 0.889 32 H 0.093 0.907 33 H 0.119 0.881 34 H 0.193 0.807 35 H 0.175 0.825 36 H 0.095 0.905 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.052 0.948 43 H 0.198 0.802 44 H 0.064 0.936 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.098 0.902 48 H 0.085 0.915 49 H 0.090 0.910 50 H 0.059 0.941 51 H 0.063 0.937 52 H 0.091 0.909 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -25.952 -12.003 13.109 31.455 hybrid contribution 0.902 0.811 -1.076 1.622 sum -25.050 -11.192 12.033 29.959 Atomic orbital electron populations 1.20866 0.86134 1.04709 1.04328 1.22139 0.98820 0.88040 0.90957 1.22261 0.93850 1.00658 1.02546 1.22014 0.95436 0.96856 0.92355 1.20642 0.93046 0.96331 1.10719 1.17964 0.86828 0.78428 0.79778 1.90757 1.72031 1.42716 1.39148 1.48494 1.08399 1.42479 1.34607 1.22331 0.96824 0.92157 0.90693 1.22595 0.93659 0.98446 1.00829 1.22514 0.94930 0.98538 0.95634 0.89593 1.20254 0.91902 0.94288 0.85658 0.93302 1.22357 0.99583 0.99288 1.00991 1.42692 1.46168 1.44337 1.05697 1.18970 1.12365 1.09974 0.93748 0.92644 1.25462 1.00894 0.99514 0.99837 1.69891 1.40443 1.33288 1.20202 0.85447 0.78486 0.79375 0.78669 1.20034 1.23090 1.17679 1.22203 0.79828 1.02167 0.96089 1.21296 0.89242 0.94405 0.91126 1.20370 0.99491 0.90447 0.98026 1.21621 1.01849 0.99245 0.95656 1.21717 1.02455 1.00098 0.94645 1.67373 1.08303 1.30259 1.14608 0.88925 0.90672 0.88079 0.80706 0.82466 0.90482 0.89110 0.90463 0.89617 0.92991 0.91407 0.94799 0.80161 0.93563 0.90590 0.90808 0.90206 0.91526 0.91042 0.94110 0.93678 0.90862 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 10.16 71.24 0.72 -0.13 16 2 C 0.14 2.13 6.78 42.58 0.29 2.41 16 3 C -0.17 -2.21 9.72 22.32 0.22 -1.99 16 4 C -0.04 -0.67 8.67 22.73 0.20 -0.47 16 5 C -0.20 -4.59 5.35 -19.99 -0.11 -4.70 16 6 C 0.58 15.56 6.62 86.79 0.57 16.13 16 7 O -0.57 -18.90 15.43 -3.88 -0.06 -18.96 16 8 N -0.61 -14.40 3.33 -815.19 -2.71 -17.11 16 9 C 0.10 1.92 5.76 86.73 0.50 2.42 16 10 C -0.12 -2.74 6.19 31.78 0.20 -2.54 16 11 C -0.10 -2.53 2.63 -9.40 -0.02 -2.55 16 12 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 13 C 0.19 6.36 2.40 45.00 0.11 6.47 16 14 H 0.05 1.77 8.08 -2.38 -0.02 1.75 16 15 C -0.16 -5.26 9.23 71.98 0.66 -4.60 16 16 N -0.75 -31.90 4.68 -322.93 -1.51 -33.41 16 17 C -0.22 -11.89 10.41 84.03 0.87 -11.01 16 18 H 0.06 3.34 8.06 -2.91 -0.02 3.31 16 19 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 20 N -0.99 -62.19 13.97 21.65 0.30 -61.89 16 21 Si 0.95 43.81 27.73 68.60 1.90 45.71 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 23 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 24 H -0.25 -10.40 6.52 99.48 0.65 -9.76 16 25 C 0.12 2.99 5.50 86.86 0.48 3.47 16 26 C 0.18 4.12 5.50 42.89 0.24 4.36 16 27 C -0.06 -1.46 2.93 -11.54 -0.03 -1.50 16 28 C -0.13 -2.56 9.06 71.98 0.65 -1.91 16 29 C -0.13 -2.53 9.13 71.98 0.66 -1.87 16 30 N -0.50 -10.32 9.71 -171.05 -1.66 -11.98 16 31 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.10 0.36 8.07 -2.39 -0.02 0.34 16 34 H 0.18 0.95 8.06 -2.91 -0.02 0.93 16 35 H 0.16 1.94 6.36 -2.91 -0.02 1.93 16 36 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.09 1.33 6.21 -2.39 -0.01 1.31 16 38 H 0.08 1.95 8.04 -2.39 -0.02 1.93 16 39 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.07 1.83 7.60 -2.39 -0.02 1.81 16 42 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.37 14.97 5.66 -92.71 -0.52 14.44 16 44 H 0.26 15.43 8.31 -92.71 -0.77 14.65 16 45 H 0.08 1.97 8.09 -2.39 -0.02 1.95 16 46 H 0.07 1.86 8.03 -2.39 -0.02 1.84 16 47 H 0.08 2.18 5.25 -2.39 -0.01 2.16 16 48 H 0.07 1.28 7.96 -2.39 -0.02 1.26 16 49 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 50 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 52 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 53 H 0.06 1.22 8.12 -2.39 -0.02 1.20 16 Total: -1.00 -72.52 418.59 3.24 -69.28 By element: Atomic # 1 Polarization: 29.34 SS G_CDS: 0.31 Total: 29.65 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 6.67 Total: -1.30 kcal Atomic # 7 Polarization: -118.81 SS G_CDS: -5.58 Total: -124.39 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.06 Total: -18.96 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.90 Total: 45.71 kcal Total: -72.52 3.24 -69.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569817134.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.616 kcal (2) G-P(sol) polarization free energy of solvation -72.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds