Wall clock time and date at job start Wed Apr 1 2020 03:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38386 * 119.85645 * 2 1 4 4 C 1.37937 * 120.14370 * 179.97438 * 3 2 1 5 5 C 1.39596 * 119.85651 * 359.97438 * 4 3 2 6 6 C 1.47842 * 120.14190 * 180.27802 * 5 4 3 7 7 O 1.21552 * 119.99838 * 179.72028 * 6 5 4 8 8 N 1.34776 * 120.00175 * 359.72055 * 6 5 4 9 9 C 1.46504 * 119.99984 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47025 * 179.97438 * 9 8 6 11 11 C 1.53005 * 109.46863 * 179.97438 * 10 9 8 12 12 N 1.46901 * 109.47016 * 180.02562 * 11 10 9 13 13 C 1.46896 * 111.00045 * 294.30679 * 12 11 10 14 14 C 1.53239 * 109.34069 * 172.74699 * 13 12 11 15 15 N 1.47080 * 108.52224 * 53.82642 * 14 13 12 16 16 C 1.36936 * 120.87771 * 128.83947 * 15 14 13 17 17 H 1.08005 * 119.99560 * 206.55883 * 16 15 14 18 18 C 1.38804 * 120.00430 * 26.56076 * 16 15 14 19 19 N 1.31620 * 120.00152 * 17.02349 * 18 16 15 20 20 Si 1.86805 * 120.00166 * 197.02698 * 18 16 15 21 21 H 1.48496 * 109.46949 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46833 * 119.99778 * 20 18 16 23 23 H 1.48497 * 109.46987 * 239.99994 * 20 18 16 24 24 C 1.47071 * 118.23716 * 308.81763 * 15 14 13 25 25 C 1.46894 * 111.00211 * 170.00378 * 12 11 10 26 26 C 1.39551 * 119.70855 * 359.97438 * 5 4 3 27 27 C 1.37979 * 119.85820 * 0.02562 * 26 5 4 28 28 C 1.50698 * 119.92868 * 180.02562 * 27 26 5 29 29 H 1.09000 * 109.46767 * 270.02516 * 1 2 3 30 30 H 1.08998 * 109.46850 * 30.02361 * 1 2 3 31 31 H 1.08996 * 109.46930 * 150.02278 * 1 2 3 32 32 H 1.07995 * 119.92201 * 359.97438 * 3 2 1 33 33 H 1.08005 * 120.06932 * 179.97438 * 4 3 2 34 34 H 0.96999 * 120.00108 * 359.97438 * 8 6 5 35 35 H 1.08998 * 109.46801 * 300.00054 * 9 8 6 36 36 H 1.09001 * 109.46901 * 59.99794 * 9 8 6 37 37 H 1.08995 * 109.47063 * 299.99976 * 10 9 8 38 38 H 1.09000 * 109.46770 * 60.00133 * 10 9 8 39 39 H 1.08998 * 109.47130 * 300.00356 * 11 10 9 40 40 H 1.09001 * 109.46733 * 60.00195 * 11 10 9 41 41 H 1.09005 * 109.49328 * 292.70763 * 13 12 11 42 42 H 1.09003 * 109.49656 * 52.78615 * 13 12 11 43 43 H 1.09009 * 109.62722 * 294.11730 * 14 13 12 44 44 H 1.09003 * 109.63184 * 173.53965 * 14 13 12 45 45 H 0.97002 * 120.00278 * 179.97438 * 19 18 16 46 46 H 1.09007 * 109.63029 * 291.47361 * 24 15 14 47 47 H 1.09000 * 109.79072 * 170.98960 * 24 15 14 48 48 H 1.09001 * 109.49072 * 307.21442 * 25 12 11 49 49 H 1.08995 * 109.49272 * 67.29123 * 25 12 11 50 50 H 1.08011 * 120.07291 * 180.02562 * 26 5 4 51 51 H 1.08997 * 109.47220 * 90.00035 * 28 27 26 52 52 H 1.09007 * 109.46980 * 209.99380 * 28 27 26 53 53 H 1.08994 * 109.47393 * 329.99616 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2002 0.0000 4 6 3.5753 1.2071 0.0005 5 6 4.2763 -0.0001 0.0016 6 6 5.7547 0.0000 0.0084 7 8 6.3624 -1.0527 0.0145 8 7 6.4286 1.1672 0.0079 9 6 7.8936 1.1672 0.0140 10 6 8.4036 2.6096 0.0113 11 6 9.9336 2.6096 0.0184 12 7 10.4233 3.9946 0.0165 13 6 10.0724 4.6753 -1.2371 14 6 10.4376 6.1595 -1.1281 15 7 11.8518 6.2652 -0.7377 16 6 12.7186 7.0558 -1.4439 17 1 13.7737 6.8253 -1.4540 18 6 12.2413 8.1534 -2.1468 19 7 11.0464 8.6368 -1.8803 20 14 13.2947 8.9447 -3.4712 21 1 14.5853 8.2179 -3.5769 22 1 12.5833 8.8811 -4.7731 23 1 13.5525 10.3634 -3.1166 24 6 12.3100 5.4997 0.4315 25 6 11.8710 4.0414 0.2611 26 6 3.5754 -1.2068 0.0027 27 6 2.1956 -1.1998 0.0021 28 6 1.4372 -2.5020 0.0039 29 1 -0.3633 0.0005 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6523 2.1334 -0.0004 33 1 4.1117 2.1445 0.0001 34 1 5.9436 2.0072 0.0026 35 1 8.2531 0.6559 0.9070 36 1 8.2606 0.6507 -0.8730 37 1 8.0440 3.1204 -0.8818 38 1 8.0365 3.1264 0.8981 39 1 10.2928 2.0988 0.9118 40 1 10.3010 2.0926 -0.8681 41 1 10.6237 4.2246 -2.0624 42 1 9.0019 4.5764 -1.4174 43 1 9.8126 6.6359 -0.3726 44 1 10.2865 6.6456 -2.0919 45 1 10.7130 9.4041 -2.3713 46 1 11.8650 5.9126 1.3369 47 1 13.3965 5.5491 0.5023 48 1 12.1050 3.4829 1.1673 49 1 12.3973 3.5997 -0.5850 50 1 4.1118 -2.1443 0.0040 51 1 1.2539 -2.8144 1.0319 52 1 0.4854 -2.3688 -0.5105 53 1 2.0235 -3.2647 -0.5085 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713072230.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:15 Heat of formation + Delta-G solvation = -12.332239 kcal Electronic energy + Delta-G solvation = -29095.732742 eV Core-core repulsion = 25159.495769 eV Total energy + Delta-G solvation = -3936.236973 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -41.35238 -39.93167 -39.63223 -37.08514 -35.89817 -34.56664 -33.56796 -33.07712 -31.92151 -31.63254 -28.96517 -28.47015 -27.54752 -25.87002 -24.53616 -24.15440 -23.18118 -22.92568 -22.19472 -20.87386 -20.73721 -18.76631 -18.61397 -17.52441 -17.03044 -16.82849 -16.38206 -16.24949 -16.02779 -15.95732 -15.48453 -15.44747 -15.31557 -15.21236 -15.04846 -14.81405 -14.56904 -14.45440 -13.93777 -13.59138 -13.49269 -13.38638 -13.36447 -12.95758 -12.83686 -12.81417 -12.65724 -12.64767 -12.55482 -12.29943 -12.23659 -12.06498 -11.95850 -11.88806 -11.77814 -11.49020 -11.32908 -11.06470 -10.59707 -10.24771 -9.81689 -9.55822 -9.26540 -8.68019 -7.88261 -5.32488 -0.18404 0.36813 1.45223 1.47020 1.57627 1.77590 2.05624 2.50167 2.81523 3.00222 3.27197 3.62888 3.68811 3.77808 3.91262 3.93535 4.01760 4.04404 4.15936 4.23800 4.28357 4.34393 4.37787 4.47237 4.59025 4.63471 4.64167 4.66418 4.69730 4.71580 4.78956 4.81143 4.81758 4.89070 4.93893 4.97826 5.03542 5.14034 5.17179 5.19694 5.23967 5.29042 5.30979 5.37998 5.39772 5.40595 5.61058 5.63943 5.69081 5.96118 6.18816 6.28473 6.37584 6.44777 7.10662 7.13353 7.84045 8.37918 9.18674 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.018955 B = 0.001622 C = 0.001533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.864993 B =17254.264128 C =18266.070599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.064 4.064 3 C -0.128 4.128 4 C -0.088 4.088 5 C -0.159 4.159 6 C 0.554 3.446 7 O -0.584 6.584 8 N -0.713 5.713 9 C 0.128 3.872 10 C -0.115 4.115 11 C 0.060 3.940 12 N -0.540 5.540 13 C 0.049 3.951 14 C 0.184 3.816 15 N -0.615 5.615 16 C -0.264 4.264 17 H 0.066 0.934 18 C -0.051 4.051 19 N -0.935 5.935 20 Si 0.967 3.033 21 H -0.268 1.268 22 H -0.289 1.289 23 H -0.291 1.291 24 C 0.143 3.857 25 C 0.054 3.946 26 C -0.075 4.075 27 C -0.105 4.105 28 C -0.117 4.117 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.154 0.846 33 H 0.146 0.854 34 H 0.414 0.586 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.030 0.970 41 H 0.014 0.986 42 H 0.086 0.914 43 H 0.000 1.000 44 H 0.056 0.944 45 H 0.250 0.750 46 H 0.017 0.983 47 H 0.059 0.941 48 H 0.095 0.905 49 H 0.021 0.979 50 H 0.121 0.879 51 H 0.080 0.920 52 H 0.089 0.911 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.551 -19.753 4.968 30.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.064 4.064 3 C -0.146 4.146 4 C -0.106 4.106 5 C -0.162 4.162 6 C 0.343 3.657 7 O -0.466 6.466 8 N -0.365 5.365 9 C 0.004 3.996 10 C -0.153 4.153 11 C -0.068 4.068 12 N -0.265 5.265 13 C -0.080 4.080 14 C 0.059 3.941 15 N -0.339 5.339 16 C -0.394 4.394 17 H 0.084 0.916 18 C -0.246 4.246 19 N -0.581 5.581 20 Si 0.795 3.205 21 H -0.193 1.193 22 H -0.216 1.216 23 H -0.218 1.218 24 C 0.017 3.983 25 C -0.075 4.075 26 C -0.094 4.094 27 C -0.105 4.105 28 C -0.173 4.173 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.172 0.828 33 H 0.164 0.836 34 H 0.251 0.749 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.048 0.952 41 H 0.033 0.967 42 H 0.105 0.895 43 H 0.018 0.982 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.035 0.965 47 H 0.078 0.922 48 H 0.113 0.887 49 H 0.040 0.960 50 H 0.139 0.861 51 H 0.099 0.901 52 H 0.107 0.893 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -22.358 -20.090 5.290 30.520 hybrid contribution 1.126 0.769 -1.345 1.915 sum -21.233 -19.321 3.945 28.977 Atomic orbital electron populations 1.21014 0.88814 1.04306 1.03635 1.20406 0.97915 0.92229 0.95860 1.21345 0.93591 0.98976 1.00663 1.21530 0.95248 0.96839 0.96999 1.19876 0.91620 0.95652 1.09046 1.18651 0.88056 0.83513 0.75436 1.90736 1.70925 1.32700 1.52220 1.45846 1.07671 1.08707 1.74274 1.21236 0.78920 0.97370 1.02065 1.21650 0.95077 0.94694 1.03865 1.22012 0.94948 0.88508 1.01370 1.61896 1.14315 1.15635 1.34655 1.22631 1.00072 0.95834 0.89438 1.20642 0.83759 0.91496 0.98249 1.44413 1.06891 1.52217 1.30406 1.19567 0.91170 1.04468 1.24215 0.91613 1.25771 0.98588 0.96919 1.03343 1.70188 1.20217 1.25109 1.42583 0.85209 0.78545 0.77726 0.78972 1.19259 1.21589 1.21809 1.21132 0.97433 0.90655 0.89056 1.22464 0.87257 0.97477 1.00275 1.21198 0.94177 0.97325 0.96749 1.20025 0.92705 0.96851 1.00901 1.20928 1.00461 0.92595 1.03352 0.89693 0.90137 0.89897 0.82833 0.83617 0.74854 0.91410 0.92219 0.91027 0.89840 0.89391 0.95155 0.96731 0.89541 0.98155 0.92607 0.94034 0.96486 0.92250 0.88672 0.96031 0.86075 0.90141 0.89262 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 9.59 71.24 0.68 -0.05 16 2 C -0.06 -0.78 5.89 -19.80 -0.12 -0.89 16 3 C -0.13 -1.55 9.68 22.23 0.22 -1.33 16 4 C -0.09 -1.29 9.54 22.53 0.21 -1.07 16 5 C -0.16 -3.24 5.87 -20.09 -0.12 -3.36 16 6 C 0.55 13.64 7.77 86.79 0.67 14.31 16 7 O -0.58 -18.91 16.35 -3.88 -0.06 -18.97 16 8 N -0.71 -13.88 5.51 -465.97 -2.57 -16.45 16 9 C 0.13 2.63 5.67 86.38 0.49 3.12 16 10 C -0.11 -2.35 5.26 30.60 0.16 -2.19 16 11 C 0.06 1.47 4.96 86.30 0.43 1.90 16 12 N -0.54 -17.79 4.63 -895.26 -4.14 -21.93 16 13 C 0.05 1.86 5.46 86.38 0.47 2.33 16 14 C 0.18 9.04 5.42 86.35 0.47 9.50 16 15 N -0.62 -31.65 3.04 -698.13 -2.12 -33.77 16 16 C -0.26 -14.78 9.63 84.03 0.81 -13.97 16 17 H 0.07 3.59 7.88 -2.91 -0.02 3.57 16 18 C -0.05 -2.87 4.94 84.86 0.42 -2.45 16 19 N -0.93 -55.53 11.15 21.65 0.24 -55.29 16 20 Si 0.97 45.12 29.59 68.60 2.03 47.15 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 22 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 23 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 24 C 0.14 6.05 6.69 86.35 0.58 6.63 16 25 C 0.05 1.85 5.62 86.38 0.49 2.34 16 26 C -0.08 -1.51 9.24 22.53 0.21 -1.30 16 27 C -0.10 -1.55 5.87 -19.90 -0.12 -1.67 16 28 C -0.12 -1.11 9.60 71.24 0.68 -0.43 16 29 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.08 0.34 8.08 -2.39 -0.02 0.32 16 31 H 0.08 0.36 5.93 -2.39 -0.01 0.34 16 32 H 0.15 1.07 8.06 -2.91 -0.02 1.04 16 33 H 0.15 1.44 6.41 -2.91 -0.02 1.43 16 34 H 0.41 5.81 6.51 -92.71 -0.60 5.21 16 35 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.07 1.50 6.40 -2.39 -0.02 1.49 16 38 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.09 1.91 7.97 -2.39 -0.02 1.89 16 40 H 0.03 0.76 8.13 -2.39 -0.02 0.75 16 41 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 42 H 0.09 2.81 6.16 -2.39 -0.01 2.79 16 43 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 44 H 0.06 3.07 6.12 -2.39 -0.01 3.05 16 45 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 46 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 47 H 0.06 2.41 7.96 -2.39 -0.02 2.39 16 48 H 0.10 2.62 7.99 -2.39 -0.02 2.60 16 49 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.12 2.63 7.65 -2.91 -0.02 2.61 16 51 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 52 H 0.09 0.52 5.93 -2.38 -0.01 0.51 16 53 H 0.07 0.65 8.08 -2.39 -0.02 0.64 16 Total: -1.00 -73.28 415.13 0.31 -72.97 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.30 Total: 14.88 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 6.64 Total: 11.42 kcal Atomic # 7 Polarization: -118.85 SS G_CDS: -8.59 Total: -127.44 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.06 Total: -18.97 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -73.28 0.31 -72.97 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713072230.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.638 kcal (2) G-P(sol) polarization free energy of solvation -73.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds