Wall clock time and date at job start Wed Apr 1 2020 05:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38226 * 120.42071 * 2 1 4 4 N 1.31861 * 120.76464 * 179.97438 * 3 2 1 5 5 C 1.31880 * 121.72411 * 0.02562 * 4 3 2 6 6 C 1.38173 * 120.76935 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.42302 * 180.02562 * 6 5 4 8 8 C 1.53006 * 109.47028 * 269.96244 * 7 6 5 9 9 C 1.50700 * 109.47028 * 179.97438 * 8 7 6 10 10 O 1.21284 * 119.99951 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00287 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00619 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.46712 * 34.99679 * 12 11 9 14 14 C 1.53001 * 109.47171 * 275.00294 * 12 11 9 15 15 C 1.52995 * 109.47698 * 154.99660 * 12 11 9 16 16 H 1.09005 * 109.49839 * 60.00057 * 15 12 11 17 17 C 1.53034 * 109.50074 * 180.02562 * 15 12 11 18 18 C 1.53044 * 109.54043 * 181.31623 * 17 15 12 19 19 C 1.53192 * 109.31188 * 298.63752 * 18 17 15 20 20 N 1.46933 * 108.77413 * 54.63580 * 19 18 17 21 21 C 1.36934 * 120.63035 * 126.39323 * 20 19 18 22 22 H 1.08007 * 119.99835 * 207.67970 * 21 20 19 23 23 C 1.38808 * 120.00262 * 27.67340 * 21 20 19 24 24 N 1.31615 * 120.00162 * 17.36339 * 23 21 20 25 25 Si 1.86802 * 120.00133 * 197.35926 * 23 21 20 26 26 H 1.48506 * 109.46992 * 90.00388 * 25 23 21 27 27 H 1.48495 * 109.47456 * 210.00173 * 25 23 21 28 28 H 1.48500 * 109.47130 * 330.00469 * 25 23 21 29 29 C 1.46929 * 118.76345 * 306.40693 * 20 19 18 30 30 C 1.38627 * 120.42274 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47370 * 270.02535 * 1 2 3 32 32 H 1.09001 * 109.46959 * 30.02523 * 1 2 3 33 33 H 1.09001 * 109.47312 * 150.02291 * 1 2 3 34 34 H 1.07999 * 119.62101 * 359.97026 * 3 2 1 35 35 H 1.08003 * 119.61269 * 179.97438 * 5 4 3 36 36 H 1.09001 * 109.46945 * 29.95253 * 7 6 5 37 37 H 1.08996 * 109.47466 * 149.95761 * 7 6 5 38 38 H 1.09005 * 109.46929 * 299.99397 * 8 7 6 39 39 H 1.08996 * 109.47391 * 59.99471 * 8 7 6 40 40 H 0.97010 * 119.99682 * 359.97438 * 11 9 8 41 41 H 1.09000 * 109.47351 * 179.97438 * 14 12 11 42 42 H 1.09000 * 109.46801 * 299.99332 * 14 12 11 43 43 H 1.08998 * 109.47316 * 59.99251 * 14 12 11 44 44 H 1.08998 * 109.46116 * 301.33617 * 17 15 12 45 45 H 1.09003 * 109.45775 * 61.31495 * 17 15 12 46 46 H 1.09006 * 109.49518 * 58.59016 * 18 17 15 47 47 H 1.08994 * 109.49912 * 178.65093 * 18 17 15 48 48 H 1.09004 * 109.58173 * 174.41805 * 19 18 17 49 49 H 1.08997 * 109.58851 * 294.70425 * 19 18 17 50 50 H 0.97003 * 120.00669 * 179.97438 * 24 23 21 51 51 H 1.08999 * 109.56287 * 293.78797 * 29 20 19 52 52 H 1.08997 * 109.61427 * 173.36219 * 29 20 19 53 53 H 1.08004 * 120.78425 * 359.75348 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.1999 0.0005 5 6 4.2256 0.0823 0.0005 6 6 3.5948 -1.1470 0.0005 7 6 4.4026 -2.4192 0.0012 8 6 4.6758 -2.8506 -1.4412 9 6 5.4841 -4.1225 -1.4406 10 8 5.8101 -4.6333 -0.3900 11 7 5.8449 -4.6923 -2.6075 12 6 6.6311 -5.9283 -2.6070 13 1 6.3295 -6.5504 -1.7642 14 6 8.1175 -5.5873 -2.4828 15 6 6.3894 -6.6872 -3.9132 16 1 6.6909 -6.0656 -4.7563 17 6 7.2100 -7.9789 -3.9130 18 6 6.9943 -8.7227 -5.2331 19 6 5.5137 -9.0905 -5.3712 20 7 4.7078 -7.8703 -5.2274 21 6 3.7933 -7.5213 -6.1850 22 1 3.5382 -6.4825 -6.3348 23 6 3.1944 -8.5023 -6.9631 24 7 3.2280 -9.7602 -6.5772 25 14 2.3404 -8.0374 -8.5581 26 1 3.3154 -8.0956 -9.6768 27 1 1.2294 -8.9872 -8.8200 28 1 1.7977 -6.6597 -8.4457 29 6 4.9017 -7.0313 -4.0369 30 6 2.2089 -1.1954 0.0005 31 1 -0.3634 0.0005 1.0277 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3634 -0.8902 -0.5135 34 1 1.6675 2.1277 -0.0005 35 1 5.3047 0.1286 0.0005 36 1 5.3489 -2.2485 0.5146 37 1 3.8463 -3.2027 0.5156 38 1 3.7296 -3.0213 -1.9548 39 1 5.2322 -2.0671 -1.9556 40 1 5.5838 -4.2838 -3.4478 41 1 8.7025 -6.5070 -2.4820 42 1 8.4191 -4.9652 -3.3255 43 1 8.2897 -5.0466 -1.5521 44 1 8.2670 -7.7376 -3.8007 45 1 6.8917 -8.6112 -3.0841 46 1 7.2891 -8.0818 -6.0641 47 1 7.5976 -9.6304 -5.2420 48 1 5.3368 -9.5317 -6.3522 49 1 5.2406 -9.8050 -4.5947 50 1 2.8091 -10.4458 -7.1207 51 1 4.5776 -7.5757 -3.1500 52 1 4.3216 -6.1140 -4.1374 53 1 1.6887 -2.1419 0.0050 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713275397.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:55 Heat of formation + Delta-G solvation = -29.005874 kcal Electronic energy + Delta-G solvation = -30013.482319 eV Core-core repulsion = 26076.522323 eV Total energy + Delta-G solvation = -3936.959996 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.36311 -40.88254 -39.41785 -36.76073 -35.52969 -34.66356 -34.48214 -32.70258 -32.20859 -30.99404 -29.80754 -28.16273 -27.16463 -26.24788 -24.69863 -23.90238 -23.60528 -22.24105 -21.57152 -21.31036 -20.50831 -18.69420 -18.08009 -17.80950 -17.65499 -17.10022 -16.78211 -16.32495 -15.93353 -15.49880 -15.43741 -15.21142 -14.97255 -14.69798 -14.65789 -14.38955 -14.12794 -14.03666 -13.96297 -13.90459 -13.67093 -13.61930 -13.23134 -13.20026 -13.06762 -13.00157 -12.77101 -12.57777 -12.42772 -12.27430 -12.19267 -11.95787 -11.94763 -11.76193 -11.50210 -11.25655 -11.09476 -10.82379 -10.53243 -10.49121 -10.37101 -9.99039 -9.71355 -8.68200 -7.86574 -5.32451 0.14397 0.32718 1.46992 1.48558 1.56992 1.71903 2.27710 2.50983 2.83371 3.27696 3.50022 3.56541 3.71894 3.84178 3.93278 3.98601 4.02966 4.05164 4.06986 4.08573 4.20286 4.24399 4.35979 4.43732 4.48850 4.54664 4.65805 4.66647 4.70737 4.79250 4.81519 4.87007 4.88085 4.90683 4.96491 4.96888 5.06702 5.12340 5.15175 5.22835 5.26523 5.27826 5.33280 5.35576 5.39048 5.48227 5.55520 5.62992 5.68458 5.78591 5.81120 6.38782 6.63683 7.03051 7.14851 7.32874 7.86513 8.38681 9.19596 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.009975 B = 0.002406 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.435217 B =11637.013613 C =13854.196113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.136 4.136 3 C 0.078 3.922 4 N -0.506 5.506 5 C 0.082 3.918 6 C -0.127 4.127 7 C -0.052 4.052 8 C -0.128 4.128 9 C 0.512 3.488 10 O -0.584 6.584 11 N -0.716 5.716 12 C 0.155 3.845 13 H 0.062 0.938 14 C -0.152 4.152 15 C -0.094 4.094 16 H 0.078 0.922 17 C -0.098 4.098 18 C -0.130 4.130 19 C 0.172 3.828 20 N -0.609 5.609 21 C -0.259 4.259 22 H 0.071 0.929 23 C -0.054 4.054 24 N -0.938 5.938 25 Si 0.967 3.033 26 H -0.285 1.285 27 H -0.299 1.299 28 H -0.266 1.266 29 C 0.156 3.844 30 C -0.085 4.085 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.172 0.828 35 H 0.166 0.834 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.411 0.589 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.049 0.951 44 H 0.086 0.914 45 H 0.048 0.952 46 H 0.055 0.945 47 H 0.068 0.932 48 H 0.052 0.948 49 H -0.011 1.011 50 H 0.249 0.751 51 H -0.005 1.005 52 H 0.056 0.944 53 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.855 19.012 11.406 22.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.138 4.138 3 C -0.079 4.079 4 N -0.214 5.214 5 C -0.074 4.074 6 C -0.128 4.128 7 C -0.091 4.091 8 C -0.167 4.167 9 C 0.300 3.700 10 O -0.464 6.464 11 N -0.367 5.367 12 C 0.050 3.950 13 H 0.080 0.920 14 C -0.210 4.210 15 C -0.114 4.114 16 H 0.097 0.903 17 C -0.136 4.136 18 C -0.169 4.169 19 C 0.046 3.954 20 N -0.332 5.332 21 C -0.389 4.389 22 H 0.089 0.911 23 C -0.249 4.249 24 N -0.584 5.584 25 Si 0.795 3.205 26 H -0.212 1.212 27 H -0.225 1.225 28 H -0.190 1.190 29 C 0.031 3.969 30 C -0.111 4.111 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.189 0.811 35 H 0.183 0.817 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.123 0.877 39 H 0.134 0.866 40 H 0.247 0.753 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.068 0.932 44 H 0.105 0.895 45 H 0.067 0.933 46 H 0.074 0.926 47 H 0.086 0.914 48 H 0.070 0.930 49 H 0.007 0.993 50 H 0.058 0.942 51 H 0.013 0.987 52 H 0.074 0.926 53 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.443 19.337 12.064 23.050 hybrid contribution -1.297 -1.168 -1.163 2.097 sum 2.146 18.169 10.901 21.297 Atomic orbital electron populations 1.20790 0.88388 1.04098 1.03433 1.21231 0.98976 0.93662 0.99912 1.23055 0.89752 0.98669 0.96377 1.67690 1.09334 1.31905 1.12470 1.22907 1.01026 0.87108 0.96406 1.20897 0.94728 0.96386 1.00836 1.20146 0.99995 0.93174 0.95753 1.21651 1.01434 0.94569 0.99062 1.21108 0.79244 0.86477 0.83139 1.90678 1.57511 1.65700 1.32553 1.46108 1.55104 1.26396 1.09109 1.20822 0.91874 0.85076 0.97250 0.91994 1.22116 0.94403 1.02648 1.01881 1.21740 0.96428 0.96835 0.96442 0.90326 1.21447 1.00064 0.95265 0.96856 1.22003 0.97009 1.00041 0.97846 1.20635 0.88582 0.87286 0.98871 1.44326 1.42555 1.25660 1.20656 1.19544 1.16397 0.92118 1.10884 0.91142 1.25813 0.99865 0.95772 1.03421 1.70205 1.48674 1.01040 1.38469 0.85272 0.77475 0.77609 0.80132 1.21229 1.22545 1.19004 1.20956 0.94484 0.93736 0.87747 1.21724 0.93598 0.99192 0.96584 0.89981 0.89886 0.90826 0.81113 0.81658 0.90076 0.90951 0.87658 0.86603 0.75307 0.90466 0.91267 0.93224 0.89534 0.93323 0.92623 0.91356 0.93004 0.99314 0.94227 0.98709 0.92599 0.83772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.04 71.23 0.72 -0.32 16 2 C -0.14 -2.02 5.90 -19.78 -0.12 -2.13 16 3 C 0.08 1.29 10.86 84.69 0.92 2.21 16 4 N -0.51 -10.29 10.36 -195.85 -2.03 -12.31 16 5 C 0.08 1.48 10.86 84.67 0.92 2.39 16 6 C -0.13 -2.14 5.15 -19.78 -0.10 -2.25 16 7 C -0.05 -0.90 4.66 29.85 0.14 -0.76 16 8 C -0.13 -2.09 5.68 29.85 0.17 -1.92 16 9 C 0.51 12.23 7.79 87.66 0.68 12.91 16 10 O -0.58 -18.49 15.64 -3.04 -0.05 -18.53 16 11 N -0.72 -16.36 4.48 -442.55 -1.98 -18.34 16 12 C 0.16 4.04 2.16 44.99 0.10 4.14 16 13 H 0.06 1.94 7.58 -2.39 -0.02 1.92 16 14 C -0.15 -3.29 9.13 71.98 0.66 -2.63 16 15 C -0.09 -2.83 1.97 -10.72 -0.02 -2.85 16 16 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 17 C -0.10 -2.96 4.85 30.62 0.15 -2.81 16 18 C -0.13 -4.66 6.08 30.67 0.19 -4.47 16 19 C 0.17 8.27 5.31 86.36 0.46 8.73 16 20 N -0.61 -29.93 3.00 -699.07 -2.09 -32.02 16 21 C -0.26 -13.90 9.58 84.03 0.81 -13.09 16 22 H 0.07 3.61 7.89 -2.91 -0.02 3.59 16 23 C -0.05 -2.96 4.91 84.86 0.42 -2.54 16 24 N -0.94 -55.60 11.19 21.65 0.24 -55.36 16 25 Si 0.97 44.13 29.59 68.60 2.03 46.16 16 26 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 27 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 28 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 29 C 0.16 6.22 5.56 86.36 0.48 6.70 16 30 C -0.09 -1.37 9.55 22.47 0.21 -1.16 16 31 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.08 0.58 8.09 -2.39 -0.02 0.56 16 33 H 0.07 0.67 8.10 -2.39 -0.02 0.65 16 34 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16 35 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 36 H 0.08 1.45 8.05 -2.39 -0.02 1.43 16 37 H 0.07 1.42 8.05 -2.39 -0.02 1.40 16 38 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.41 7.83 8.42 -92.70 -0.78 7.05 16 41 H 0.08 1.53 6.40 -2.39 -0.02 1.51 16 42 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.09 2.05 6.36 -2.39 -0.02 2.04 16 45 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 47 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 48 H 0.05 2.83 6.04 -2.38 -0.01 2.82 16 49 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 50 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 51 H -0.01 -0.22 8.14 -2.39 -0.02 -0.24 16 52 H 0.06 2.12 7.44 -2.39 -0.02 2.10 16 53 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -71.30 420.10 3.00 -68.31 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: 0.10 Total: 21.96 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 6.77 Total: 0.15 kcal Atomic # 7 Polarization: -112.17 SS G_CDS: -5.86 Total: -118.04 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.05 Total: -18.53 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -71.30 3.00 -68.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713275397.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.303 kcal (2) G-P(sol) polarization free energy of solvation -71.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds