Wall clock time and date at job start Wed Apr 1 2020 03:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38253 * 120.00101 * 2 1 4 4 C 1.38210 * 120.00203 * 179.97438 * 3 2 1 5 5 C 1.38254 * 119.99960 * 359.77597 * 4 3 2 6 6 C 1.38221 * 120.00121 * 0.45850 * 5 4 3 7 7 C 1.50695 * 120.00341 * 179.79128 * 6 5 4 8 8 C 1.53001 * 109.47168 * 269.72619 * 7 6 5 9 9 C 1.50699 * 109.47498 * 180.02562 * 8 7 6 10 10 O 1.21284 * 119.99432 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00053 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99553 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.46998 * 180.02562 * 12 11 9 14 14 N 1.46898 * 109.47384 * 180.02562 * 13 12 11 15 15 C 1.46903 * 111.00133 * 169.99963 * 14 13 12 16 16 C 1.53230 * 109.33899 * 187.25239 * 15 14 13 17 17 N 1.47080 * 108.52531 * 306.16795 * 16 15 14 18 18 C 1.36931 * 120.88364 * 231.18821 * 17 16 15 19 19 H 1.07994 * 120.00368 * 26.84029 * 18 17 16 20 20 C 1.38812 * 119.99721 * 206.56279 * 18 17 16 21 21 N 1.31619 * 120.00606 * 17.47328 * 20 18 17 22 22 Si 1.86807 * 119.99780 * 197.47555 * 20 18 17 23 23 H 1.48504 * 109.46947 * 94.38387 * 22 20 18 24 24 H 1.48508 * 109.46899 * 214.38152 * 22 20 18 25 25 H 1.48495 * 109.47303 * 334.38014 * 22 20 18 26 26 C 1.47082 * 118.23403 * 51.45931 * 17 16 15 27 27 C 1.46904 * 110.99940 * 294.30302 * 14 13 12 28 28 C 1.38215 * 119.99579 * 179.97438 * 2 1 3 29 29 H 1.08995 * 109.47156 * 270.01914 * 1 2 3 30 30 H 1.09001 * 109.46735 * 30.02098 * 1 2 3 31 31 H 1.09006 * 109.47104 * 150.01770 * 1 2 3 32 32 H 1.08002 * 120.00106 * 359.97438 * 3 2 1 33 33 H 1.08003 * 120.00385 * 179.97438 * 4 3 2 34 34 H 1.08002 * 120.00450 * 180.25163 * 5 4 3 35 35 H 1.09002 * 109.47012 * 149.72778 * 7 6 5 36 36 H 1.08999 * 109.47532 * 29.72553 * 7 6 5 37 37 H 1.09000 * 109.46958 * 59.99631 * 8 7 6 38 38 H 1.09005 * 109.47254 * 300.00237 * 8 7 6 39 39 H 0.96994 * 120.00124 * 359.97438 * 11 9 8 40 40 H 1.09000 * 109.47601 * 60.00009 * 12 11 9 41 41 H 1.09000 * 109.47255 * 299.99457 * 12 11 9 42 42 H 1.09000 * 109.46958 * 59.99590 * 13 12 11 43 43 H 1.09005 * 109.47254 * 300.00196 * 13 12 11 44 44 H 1.09001 * 109.49186 * 67.29185 * 15 14 13 45 45 H 1.09000 * 109.51153 * 307.22921 * 15 14 13 46 46 H 1.09004 * 109.63143 * 186.45915 * 16 15 14 47 47 H 1.09004 * 109.63158 * 65.88032 * 16 15 14 48 48 H 0.96993 * 120.00972 * 179.97438 * 21 20 18 49 49 H 1.09000 * 109.63087 * 68.24805 * 26 17 16 50 50 H 1.08996 * 109.63194 * 188.83501 * 26 17 16 51 51 H 1.09005 * 109.48966 * 292.70358 * 27 14 13 52 52 H 1.08995 * 109.49430 * 52.78410 * 27 14 13 53 53 H 1.07993 * 120.00590 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0058 6 6 3.5806 -1.1970 0.0009 7 6 4.3341 -2.5021 0.0018 8 6 4.5891 -2.9448 -1.4404 9 6 5.3421 -4.2502 -1.4396 10 8 5.6453 -4.7746 -0.3888 11 7 5.6785 -4.8349 -2.6063 12 6 6.4109 -6.1037 -2.6054 13 6 6.6658 -6.5464 -4.0476 14 7 7.3997 -7.8189 -4.0467 15 6 7.4566 -8.3948 -5.3970 16 6 8.0667 -9.7986 -5.3247 17 7 9.3608 -9.7104 -4.6312 18 6 10.4912 -10.2535 -5.1810 19 1 10.5737 -10.3586 -6.2527 20 6 11.5336 -10.6637 -4.3612 21 7 11.3233 -10.8576 -3.0764 22 14 13.2349 -10.9405 -5.0813 23 1 14.0469 -9.7075 -4.9209 24 1 13.8961 -12.0647 -4.3710 25 1 13.1141 -11.2695 -6.5243 26 6 9.4073 -9.0288 -3.3288 27 6 8.7455 -7.6501 -3.4823 28 6 2.1980 -1.1970 0.0005 29 1 -0.3633 0.0003 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5136 32 1 1.6583 2.1326 -0.0004 33 1 4.1205 2.1326 0.0001 34 1 5.3517 0.0000 0.0103 35 1 3.7450 -3.2614 0.5161 36 1 5.2865 -2.3715 0.5155 37 1 5.1782 -2.1855 -1.9547 38 1 3.6367 -3.0755 -1.9542 39 1 5.4356 -4.4157 -3.4466 40 1 5.8221 -6.8628 -2.0906 41 1 7.3636 -5.9729 -2.0922 42 1 7.2549 -5.7871 -4.5620 43 1 5.7134 -6.6771 -4.5613 44 1 8.0729 -7.7628 -6.0363 45 1 6.4494 -8.4567 -5.8090 46 1 8.2171 -10.1849 -6.3328 47 1 7.3994 -10.4599 -4.7719 48 1 12.0515 -11.1446 -2.5036 49 1 8.8663 -9.6174 -2.5879 50 1 10.4444 -8.9057 -3.0166 51 1 9.3439 -7.0285 -4.1484 52 1 8.6729 -7.1721 -2.5055 53 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713810118.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:32 Heat of formation + Delta-G solvation = -16.497142 kcal Electronic energy + Delta-G solvation = -28823.924581 eV Core-core repulsion = 24887.507004 eV Total energy + Delta-G solvation = -3936.417577 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.95966 -40.21164 -39.68151 -36.88817 -35.45089 -35.27113 -33.34764 -33.14721 -31.63614 -31.21502 -29.94670 -27.82495 -27.59275 -25.70923 -24.77121 -24.24630 -22.91507 -22.57477 -21.62287 -21.02693 -20.80902 -18.75279 -18.12109 -17.32921 -17.24860 -17.01978 -16.76492 -16.36713 -16.02858 -15.83180 -15.70230 -15.34804 -15.22994 -15.18781 -14.90693 -14.64916 -14.54468 -14.27469 -14.01184 -13.77253 -13.70197 -13.40224 -13.21807 -13.01894 -12.99321 -12.82849 -12.63600 -12.56570 -12.47406 -12.22139 -12.15900 -12.04516 -11.86492 -11.82584 -11.71932 -11.56782 -11.42961 -10.95125 -10.60087 -10.09780 -9.66881 -9.45504 -9.31004 -8.70102 -7.88420 -5.33422 0.44921 0.51152 1.45999 1.47042 1.56772 1.64943 2.09349 2.50145 2.86070 3.09931 3.27106 3.66385 3.68767 3.86350 3.90312 4.00690 4.06849 4.07678 4.23269 4.27517 4.29949 4.34109 4.34550 4.45952 4.52650 4.54039 4.62499 4.63775 4.67889 4.70591 4.78679 4.83306 4.85072 4.92116 4.93971 5.00938 5.03858 5.04500 5.12869 5.19815 5.26043 5.34646 5.36047 5.42115 5.60541 5.61123 5.66267 5.72388 5.75937 6.13160 6.16669 6.22738 6.36191 6.56711 7.11791 7.27887 7.82973 8.37286 9.18443 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.027092 B = 0.001449 C = 0.001417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.273796 B =19322.303588 C =19761.880772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.094 4.094 3 C -0.135 4.135 4 C -0.120 4.120 5 C -0.135 4.135 6 C -0.083 4.083 7 C -0.062 4.062 8 C -0.120 4.120 9 C 0.507 3.493 10 O -0.590 6.590 11 N -0.715 5.715 12 C 0.129 3.871 13 C 0.055 3.945 14 N -0.544 5.544 15 C 0.058 3.942 16 C 0.141 3.859 17 N -0.614 5.614 18 C -0.264 4.264 19 H 0.071 0.929 20 C -0.053 4.053 21 N -0.937 5.937 22 Si 0.969 3.031 23 H -0.287 1.287 24 H -0.295 1.295 25 H -0.266 1.266 26 C 0.185 3.815 27 C 0.050 3.950 28 C -0.129 4.129 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.128 0.872 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.418 0.582 40 H 0.057 0.943 41 H 0.047 0.953 42 H 0.046 0.954 43 H 0.103 0.897 44 H 0.029 0.971 45 H 0.101 0.899 46 H 0.064 0.936 47 H 0.015 0.985 48 H 0.250 0.750 49 H -0.004 1.004 50 H 0.055 0.945 51 H 0.023 0.977 52 H 0.074 0.926 53 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.152 26.807 0.892 34.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 C -0.153 4.153 4 C -0.138 4.138 5 C -0.153 4.153 6 C -0.083 4.083 7 C -0.100 4.100 8 C -0.160 4.160 9 C 0.295 3.705 10 O -0.470 6.470 11 N -0.368 5.368 12 C 0.004 3.996 13 C -0.073 4.073 14 N -0.269 5.269 15 C -0.071 4.071 16 C 0.015 3.985 17 N -0.338 5.338 18 C -0.394 4.394 19 H 0.088 0.912 20 C -0.248 4.248 21 N -0.584 5.584 22 Si 0.797 3.203 23 H -0.213 1.213 24 H -0.222 1.222 25 H -0.190 1.190 26 C 0.059 3.941 27 C -0.079 4.079 28 C -0.147 4.147 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.154 0.846 33 H 0.156 0.844 34 H 0.146 0.854 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.255 0.745 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.121 0.879 44 H 0.047 0.953 45 H 0.119 0.881 46 H 0.082 0.918 47 H 0.033 0.967 48 H 0.059 0.941 49 H 0.014 0.986 50 H 0.073 0.927 51 H 0.042 0.958 52 H 0.092 0.908 53 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -22.082 26.021 1.994 34.186 hybrid contribution 1.695 -0.040 -0.614 1.803 sum -20.387 25.981 1.381 33.054 Atomic orbital electron populations 1.20839 0.89836 1.03572 1.02877 1.20224 0.97254 0.93057 0.98876 1.21330 0.94540 0.98220 1.01246 1.21398 0.94638 0.98510 0.99284 1.21259 1.00495 0.92181 1.01348 1.19876 0.93902 0.94700 0.99851 1.20241 1.00133 0.93721 0.95901 1.21622 1.02245 0.93088 0.99012 1.21349 0.78861 0.87304 0.82961 1.90726 1.56466 1.66721 1.33073 1.45814 1.57876 1.23716 1.09437 1.21094 0.95893 0.85326 0.97311 1.22191 0.99729 0.90228 0.95174 1.61755 1.16549 1.25579 1.23026 1.22469 1.00889 0.95714 0.87987 1.21180 0.86380 0.94870 0.96069 1.44432 1.04380 1.64156 1.20859 1.19579 0.94139 1.34196 0.91487 0.91180 1.25819 1.03011 0.99631 0.96338 1.70199 1.31718 1.50853 1.05600 0.85224 0.80021 0.76881 0.78157 1.21348 1.22227 1.19007 1.20695 0.98010 0.89121 0.86319 1.22682 0.88695 0.97932 0.98606 1.21138 0.93577 0.98335 1.01691 0.90735 0.90552 0.90992 0.84578 0.84428 0.85392 0.91389 0.91494 0.86621 0.86418 0.74477 0.92451 0.93446 0.93539 0.87906 0.95305 0.88073 0.91801 0.96723 0.94108 0.98609 0.92655 0.95840 0.90811 0.85430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 71.24 0.71 -0.22 16 2 C -0.09 -1.19 5.88 -19.87 -0.12 -1.31 16 3 C -0.14 -1.63 9.70 22.27 0.22 -1.41 16 4 C -0.12 -1.49 10.05 22.27 0.22 -1.27 16 5 C -0.13 -1.90 9.70 22.27 0.22 -1.69 16 6 C -0.08 -1.25 5.13 -19.86 -0.10 -1.36 16 7 C -0.06 -1.03 4.63 29.85 0.14 -0.89 16 8 C -0.12 -1.58 5.68 29.85 0.17 -1.41 16 9 C 0.51 10.95 7.83 87.66 0.69 11.63 16 10 O -0.59 -19.06 15.98 -3.04 -0.05 -19.10 16 11 N -0.72 -12.99 5.56 -463.06 -2.57 -15.56 16 12 C 0.13 3.21 5.61 86.38 0.48 3.70 16 13 C 0.05 1.26 5.08 86.30 0.44 1.70 16 14 N -0.54 -17.95 4.63 -894.31 -4.14 -22.09 16 15 C 0.06 1.88 5.62 86.38 0.49 2.37 16 16 C 0.14 5.86 6.69 86.35 0.58 6.44 16 17 N -0.61 -31.74 3.03 -697.26 -2.11 -33.86 16 18 C -0.26 -14.76 9.63 84.03 0.81 -13.95 16 19 H 0.07 3.78 7.88 -2.91 -0.02 3.75 16 20 C -0.05 -3.01 4.93 84.86 0.42 -2.59 16 21 N -0.94 -57.01 11.16 21.65 0.24 -56.77 16 22 Si 0.97 45.44 29.59 68.60 2.03 47.47 16 23 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 24 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 26 C 0.18 9.37 5.45 86.50 0.47 9.84 16 27 C 0.05 1.97 5.48 86.54 0.47 2.44 16 28 C -0.13 -1.83 9.36 22.27 0.21 -1.62 16 29 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.08 0.45 8.09 -2.39 -0.02 0.44 16 31 H 0.07 0.51 8.09 -2.38 -0.02 0.49 16 32 H 0.14 1.08 8.06 -2.91 -0.02 1.06 16 33 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16 34 H 0.13 1.54 8.06 -2.91 -0.02 1.52 16 35 H 0.07 1.29 8.04 -2.39 -0.02 1.27 16 36 H 0.07 1.29 8.04 -2.39 -0.02 1.27 16 37 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.12 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.42 4.32 8.47 -92.71 -0.79 3.54 16 40 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.05 1.42 6.40 -2.39 -0.02 1.41 16 42 H 0.05 0.99 8.12 -2.39 -0.02 0.97 16 43 H 0.10 1.84 7.97 -2.38 -0.02 1.82 16 44 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.10 2.52 7.99 -2.39 -0.02 2.50 16 46 H 0.06 2.52 7.95 -2.38 -0.02 2.50 16 47 H 0.01 0.65 8.14 -2.38 -0.02 0.63 16 48 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 49 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 50 H 0.06 3.15 6.11 -2.39 -0.01 3.13 16 51 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 52 H 0.07 2.72 6.16 -2.39 -0.01 2.71 16 53 H 0.13 1.55 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -74.94 422.72 0.00 -74.94 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.09 Total: 14.55 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 6.51 Total: 10.41 kcal Atomic # 7 Polarization: -119.68 SS G_CDS: -8.58 Total: -128.27 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.05 Total: -19.10 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -74.94 0.00 -74.94 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713810118.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.446 kcal (2) G-P(sol) polarization free energy of solvation -74.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds