Wall clock time and date at job start Wed Apr 1 2020 04:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31879 * 119.61829 * 2 1 4 4 C 1.31854 * 121.72701 * 179.97438 * 3 2 1 5 5 C 1.38226 * 120.76353 * 0.02562 * 4 3 2 6 6 C 1.38630 * 119.15957 * 359.97438 * 5 4 3 7 7 C 1.38184 * 119.61708 * 179.97438 * 2 1 3 8 8 C 1.50703 * 120.41784 * 359.97438 * 7 2 1 9 9 C 1.50708 * 109.47102 * 85.00174 * 8 7 2 10 10 O 1.21280 * 119.99785 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00116 * 180.02562 * 9 8 7 12 12 C 1.46493 * 120.00273 * 174.66905 * 11 9 8 13 13 C 1.53003 * 109.46909 * 303.90774 * 12 11 9 14 14 N 1.46504 * 109.47186 * 305.51578 * 13 12 11 15 15 C 1.36935 * 120.00247 * 175.04705 * 14 13 12 16 16 H 1.07995 * 119.99591 * 359.97438 * 15 14 13 17 17 C 1.38810 * 119.99821 * 180.02562 * 15 14 13 18 18 N 1.31625 * 120.00272 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99881 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47238 * 89.99631 * 19 17 15 21 21 H 1.48497 * 109.46977 * 209.99582 * 19 17 15 22 22 H 1.48497 * 109.46635 * 329.99447 * 19 17 15 23 23 C 1.52994 * 109.47505 * 183.90872 * 12 11 9 24 24 C 1.53007 * 109.46736 * 299.99583 * 23 12 11 25 25 C 1.52994 * 109.47081 * 299.99773 * 24 23 12 26 26 C 1.53002 * 109.47014 * 60.00307 * 25 24 23 27 27 C 1.52995 * 109.46945 * 299.99448 * 26 25 24 28 28 H 1.08998 * 109.47040 * 179.97438 * 27 26 25 29 29 C 1.52992 * 109.47512 * 300.00125 * 27 26 25 30 30 H 1.08995 * 109.47397 * 89.99513 * 1 2 3 31 31 H 1.09003 * 109.46994 * 209.99777 * 1 2 3 32 32 H 1.08995 * 109.46922 * 329.99277 * 1 2 3 33 33 H 1.07997 * 119.61822 * 179.97438 * 4 3 2 34 34 H 1.08001 * 120.41805 * 179.97438 * 5 4 3 35 35 H 1.08002 * 120.78665 * 180.02562 * 6 5 4 36 36 H 1.08995 * 109.47577 * 204.99909 * 8 7 2 37 37 H 1.08997 * 109.47003 * 325.00363 * 8 7 2 38 38 H 0.97006 * 119.99923 * 354.66302 * 11 9 8 39 39 H 1.08998 * 109.47392 * 65.51808 * 13 12 11 40 40 H 1.09003 * 109.47353 * 185.51794 * 13 12 11 41 41 H 0.97002 * 119.99335 * 355.05006 * 14 13 12 42 42 H 0.97002 * 119.99607 * 180.02562 * 18 17 15 43 43 H 1.08994 * 109.47437 * 59.99677 * 23 12 11 44 44 H 1.09004 * 109.47542 * 179.97438 * 23 12 11 45 45 H 1.09002 * 109.46765 * 179.97438 * 24 23 12 46 46 H 1.08997 * 109.46709 * 60.00343 * 24 23 12 47 47 H 1.08997 * 109.47814 * 299.99893 * 25 24 23 48 48 H 1.09006 * 109.46804 * 179.97438 * 25 24 23 49 49 H 1.09005 * 109.46891 * 179.97438 * 26 25 24 50 50 H 1.09004 * 109.47026 * 60.00065 * 26 25 24 51 51 H 1.09006 * 109.47618 * 179.97438 * 29 27 26 52 52 H 1.09006 * 109.47375 * 300.00385 * 29 27 26 53 53 H 1.08998 * 109.47086 * 59.99883 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4765 1.1950 0.0005 5 6 4.2267 0.0340 0.0005 6 6 3.5766 -1.1903 0.0005 7 6 2.1899 -1.2013 0.0005 8 6 1.4372 -2.5069 0.0017 9 6 1.0785 -2.8812 -1.4134 10 8 1.4018 -2.1587 -2.3323 11 7 0.3976 -4.0183 -1.6577 12 6 -0.0529 -4.3246 -3.0176 13 6 -0.9135 -3.1730 -3.5412 14 7 -2.0045 -2.9111 -2.5992 15 6 -2.8490 -1.8532 -2.8064 16 1 -2.7104 -1.2117 -3.6641 17 6 -3.8823 -1.6048 -1.9135 18 7 -4.0508 -2.3864 -0.8679 19 14 -5.0348 -0.1621 -2.1966 20 1 -6.1871 -0.6037 -3.0226 21 1 -5.5271 0.3420 -0.8894 22 1 -4.3061 0.9222 -2.9026 23 6 -0.8785 -5.6126 -3.0035 24 6 -0.0178 -6.7642 -2.4799 25 6 1.1977 -6.9475 -3.3907 26 6 2.0232 -5.6594 -3.4048 27 6 1.1627 -4.5079 -3.9285 28 1 1.7506 -3.5901 -3.9381 29 6 0.6922 -4.8276 -5.3487 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 3.9753 2.1528 0.0001 34 1 5.3057 0.0803 0.0005 35 1 4.1368 -2.1137 0.0010 36 1 2.0627 -3.2866 0.4362 37 1 0.5267 -2.4008 0.5914 38 1 0.2058 -4.6340 -0.9330 39 1 -0.2996 -2.2782 -3.6441 40 1 -1.3289 -3.4422 -4.5124 41 1 -2.1286 -3.4871 -1.8286 42 1 -4.7732 -2.2129 -0.2442 43 1 -1.7445 -5.4821 -2.3546 44 1 -1.2141 -5.8403 -4.0153 45 1 -0.6061 -7.6818 -2.4694 46 1 0.3173 -6.5364 -1.4680 47 1 0.8626 -7.1754 -4.4026 48 1 1.8111 -7.7677 -3.0174 49 1 2.8895 -5.7902 -4.0535 50 1 2.3585 -5.4316 -2.3930 51 1 0.0787 -4.0074 -5.7216 52 1 1.5582 -4.9583 -5.9977 53 1 0.1041 -5.7453 -5.3386 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715140530.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:37 Heat of formation + Delta-G solvation = -23.994910 kcal Electronic energy + Delta-G solvation = -32850.269793 eV Core-core repulsion = 28913.527089 eV Total energy + Delta-G solvation = -3936.742704 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.93801 -41.15132 -39.10262 -36.43348 -34.74855 -34.66627 -33.87793 -33.27799 -32.72796 -31.02904 -29.63442 -28.24941 -27.56315 -26.44671 -24.68996 -23.86017 -23.02898 -22.98200 -21.92475 -21.22818 -19.45559 -18.91213 -18.19292 -17.78174 -17.27852 -16.99364 -16.67074 -16.27660 -16.03812 -15.61275 -15.52832 -15.30331 -15.05716 -14.65952 -14.61412 -14.50066 -14.08245 -13.95963 -13.94644 -13.77591 -13.55496 -13.48461 -13.26879 -13.08672 -12.92087 -12.89199 -12.83977 -12.61548 -12.44390 -12.23934 -12.14590 -12.09967 -11.92314 -11.80258 -11.20279 -11.10922 -11.04383 -10.86427 -10.68909 -10.36895 -10.29074 -9.72124 -9.67544 -8.88274 -7.92126 -5.16026 0.18519 0.40041 1.42992 1.44408 1.52034 1.86981 2.39596 2.56218 2.91249 3.41173 3.41722 3.65582 3.70088 3.84924 3.88311 3.93690 3.98536 4.11691 4.14230 4.15919 4.27473 4.39767 4.43894 4.49070 4.53899 4.58261 4.60656 4.64887 4.72096 4.73167 4.74113 4.81984 4.86520 4.90443 4.95026 4.99961 5.16664 5.17695 5.20361 5.21287 5.24712 5.29352 5.30882 5.35473 5.43607 5.48255 5.50163 5.56684 5.64930 5.85170 5.86110 6.31071 6.80372 7.10506 7.39381 7.52219 8.13670 8.44068 9.30235 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.006656 B = 0.005970 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4205.902392 B = 4688.850675 C = 7952.893653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.122 3.878 3 N -0.522 5.522 4 C 0.082 3.918 5 C -0.174 4.174 6 C -0.065 4.065 7 C -0.120 4.120 8 C -0.099 4.099 9 C 0.523 3.477 10 O -0.567 6.567 11 N -0.703 5.703 12 C 0.193 3.807 13 C 0.145 3.855 14 N -0.723 5.723 15 C -0.235 4.235 16 H 0.053 0.947 17 C -0.057 4.057 18 N -0.955 5.955 19 Si 0.953 3.047 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.284 1.284 23 C -0.116 4.116 24 C -0.112 4.112 25 C -0.114 4.114 26 C -0.101 4.101 27 C -0.093 4.093 28 H 0.058 0.942 29 C -0.146 4.146 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.178 0.822 34 H 0.171 0.829 35 H 0.163 0.837 36 H 0.139 0.861 37 H 0.105 0.895 38 H 0.406 0.594 39 H 0.013 0.987 40 H 0.013 0.987 41 H 0.379 0.621 42 H 0.250 0.750 43 H 0.052 0.948 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.078 0.922 49 H 0.066 0.934 50 H 0.059 0.941 51 H 0.036 0.964 52 H 0.066 0.934 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.722 -9.815 2.220 21.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.014 4.014 3 N -0.232 5.232 4 C -0.075 4.075 5 C -0.193 4.193 6 C -0.091 4.091 7 C -0.122 4.122 8 C -0.139 4.139 9 C 0.311 3.689 10 O -0.446 6.446 11 N -0.355 5.355 12 C 0.107 3.893 13 C 0.017 3.983 14 N -0.366 5.366 15 C -0.367 4.367 16 H 0.071 0.929 17 C -0.250 4.250 18 N -0.606 5.606 19 Si 0.783 3.217 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.210 1.210 23 C -0.154 4.154 24 C -0.149 4.149 25 C -0.152 4.152 26 C -0.138 4.138 27 C -0.113 4.113 28 H 0.076 0.924 29 C -0.204 4.204 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.195 0.805 34 H 0.188 0.812 35 H 0.180 0.820 36 H 0.157 0.843 37 H 0.123 0.877 38 H 0.243 0.757 39 H 0.031 0.969 40 H 0.031 0.969 41 H 0.212 0.788 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.097 0.903 49 H 0.085 0.915 50 H 0.078 0.922 51 H 0.055 0.945 52 H 0.085 0.915 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 18.379 -8.370 1.479 20.250 hybrid contribution -1.072 0.334 0.212 1.142 sum 17.308 -8.036 1.692 19.157 Atomic orbital electron populations 1.20566 0.89825 1.03044 1.01759 1.21107 0.96480 0.88906 0.94945 1.67449 1.11875 1.29813 1.14059 1.23252 0.88751 1.00426 0.95049 1.22441 1.02924 0.92462 1.01496 1.21810 0.92687 1.00146 0.94445 1.20233 0.95238 0.94625 1.02129 1.20705 1.02690 0.95967 0.94506 1.20588 0.76993 0.80319 0.91040 1.90638 1.54883 1.51829 1.47227 1.45820 1.56566 1.22624 1.10478 1.20316 0.93174 0.93728 0.82122 1.21130 0.88714 0.96289 0.92145 1.42215 1.32244 1.33316 1.28835 1.19362 1.06482 1.04776 1.06111 0.92903 1.25173 1.00790 1.01385 0.97676 1.69739 1.34389 1.41057 1.15444 0.85454 0.79558 0.80109 0.76572 1.21402 1.21718 1.20993 1.21747 0.97748 0.93322 1.02593 1.21523 0.96509 0.97329 0.99559 1.21557 0.96280 0.97028 1.00289 1.21438 0.97498 0.93932 1.00966 1.21336 0.95711 0.99378 0.94856 0.92351 1.21946 1.01441 1.01577 0.95403 0.93300 0.90273 0.91279 0.80490 0.81182 0.81954 0.84270 0.87669 0.75715 0.96859 0.96942 0.78779 0.94059 0.92876 0.90630 0.90590 0.91292 0.91444 0.90330 0.91488 0.92196 0.94501 0.91480 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.71 9.77 71.24 0.70 -3.01 16 2 C 0.12 4.34 6.78 42.54 0.29 4.63 16 3 N -0.52 -18.12 10.27 -183.89 -1.89 -20.00 16 4 C 0.08 2.13 11.18 84.69 0.95 3.08 16 5 C -0.17 -3.64 10.11 22.36 0.23 -3.41 16 6 C -0.07 -1.49 9.84 22.47 0.22 -1.27 16 7 C -0.12 -3.50 4.39 -19.77 -0.09 -3.59 16 8 C -0.10 -2.55 5.35 29.11 0.16 -2.39 16 9 C 0.52 17.01 7.23 87.66 0.63 17.64 16 10 O -0.57 -23.28 12.34 -3.03 -0.04 -23.32 16 11 N -0.70 -20.34 3.57 -422.93 -1.51 -21.85 16 12 C 0.19 6.04 0.09 3.61 0.00 6.04 16 13 C 0.14 6.27 4.27 86.38 0.37 6.64 16 14 N -0.72 -36.51 5.18 -343.44 -1.78 -38.29 16 15 C -0.24 -13.54 9.99 84.03 0.84 -12.70 16 16 H 0.05 3.12 7.83 -2.91 -0.02 3.10 16 17 C -0.06 -3.29 5.50 84.86 0.47 -2.82 16 18 N -0.96 -56.47 13.06 21.65 0.28 -56.19 16 19 Si 0.95 47.63 29.55 68.60 2.03 49.66 16 20 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 21 H -0.29 -14.41 7.11 99.48 0.71 -13.71 16 22 H -0.28 -14.14 7.11 99.48 0.71 -13.43 16 23 C -0.12 -3.18 4.40 30.59 0.13 -3.04 16 24 C -0.11 -2.12 5.75 30.59 0.18 -1.94 16 25 C -0.11 -1.91 5.65 30.59 0.17 -1.74 16 26 C -0.10 -2.05 5.29 30.59 0.16 -1.88 16 27 C -0.09 -2.57 2.10 -10.80 -0.02 -2.59 16 28 H 0.06 2.01 6.28 -2.39 -0.01 1.99 16 29 C -0.15 -3.73 8.15 71.98 0.59 -3.14 16 30 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.08 2.95 6.02 -2.39 -0.01 2.94 16 32 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.18 3.36 8.06 -2.91 -0.02 3.33 16 34 H 0.17 2.13 8.06 -2.91 -0.02 2.10 16 35 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 36 H 0.14 2.27 8.06 -2.39 -0.02 2.25 16 37 H 0.11 2.84 6.17 -2.39 -0.01 2.83 16 38 H 0.41 9.60 7.20 -92.70 -0.67 8.94 16 39 H 0.01 0.68 6.26 -2.39 -0.01 0.66 16 40 H 0.01 0.57 6.74 -2.39 -0.02 0.55 16 41 H 0.38 19.35 6.47 -92.71 -0.60 18.75 16 42 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 43 H 0.05 1.73 7.11 -2.39 -0.02 1.72 16 44 H 0.08 2.08 6.43 -2.38 -0.02 2.06 16 45 H 0.08 1.27 8.14 -2.39 -0.02 1.26 16 46 H 0.07 1.18 6.78 -2.39 -0.02 1.16 16 47 H 0.07 1.12 6.43 -2.39 -0.02 1.10 16 48 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 49 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 50 H 0.06 1.21 7.60 -2.39 -0.02 1.19 16 51 H 0.04 1.10 6.56 -2.38 -0.02 1.08 16 52 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 53 H 0.07 1.63 4.81 -2.39 -0.01 1.62 16 Total: -1.00 -75.38 399.23 2.73 -72.65 By element: Atomic # 1 Polarization: 43.19 SS G_CDS: -0.33 Total: 42.86 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 5.97 Total: -5.51 kcal Atomic # 7 Polarization: -131.45 SS G_CDS: -4.90 Total: -136.34 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.04 Total: -23.32 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Total: -75.38 2.73 -72.65 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715140530.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.656 kcal (2) G-P(sol) polarization free energy of solvation -75.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds