Wall clock time and date at job start Wed Apr 1 2020 05:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38223 * 120.41860 * 2 1 4 4 N 1.31855 * 120.76173 * 180.02562 * 3 2 1 5 5 C 1.31884 * 121.72713 * 359.69956 * 4 3 2 6 6 C 1.38180 * 120.76355 * 0.58322 * 5 4 3 7 7 C 1.50700 * 120.42000 * 179.70785 * 6 5 4 8 8 C 1.52998 * 109.47157 * 269.72575 * 7 6 5 9 9 C 1.50700 * 109.47380 * 179.97438 * 8 7 6 10 10 O 1.21274 * 120.00032 * 0.02562 * 9 8 7 11 11 N 1.34773 * 119.99873 * 180.27404 * 9 8 7 12 12 C 1.46510 * 119.99908 * 174.44411 * 11 9 8 13 13 H 1.09001 * 109.46533 * 4.63399 * 12 11 9 14 14 C 1.53001 * 109.46954 * 124.62766 * 12 11 9 15 15 N 1.46503 * 109.47472 * 305.00504 * 14 12 11 16 16 C 1.36932 * 119.99896 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00466 * 359.97438 * 16 15 14 18 18 C 1.38816 * 119.99798 * 179.97438 * 16 15 14 19 19 N 1.31616 * 120.00014 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00090 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47170 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47276 * 120.00060 * 20 18 16 23 23 H 1.48503 * 109.47284 * 240.00295 * 20 18 16 24 24 C 1.52996 * 109.46855 * 244.62992 * 12 11 9 25 25 C 1.54271 * 110.02733 * 179.39182 * 24 12 11 26 26 C 1.54962 * 104.16165 * 217.13518 * 25 24 12 27 27 C 1.54895 * 102.77423 * 37.89125 * 26 25 24 28 28 C 1.53870 * 110.03543 * 62.17724 * 24 12 11 29 29 C 1.38626 * 120.41933 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47142 * 269.97973 * 1 2 3 31 31 H 1.08998 * 109.47124 * 29.98169 * 1 2 3 32 32 H 1.09005 * 109.46728 * 149.98240 * 1 2 3 33 33 H 1.08002 * 119.61753 * 359.97438 * 3 2 1 34 34 H 1.08001 * 119.61911 * 180.31991 * 5 4 3 35 35 H 1.09001 * 109.47598 * 149.72596 * 7 6 5 36 36 H 1.09002 * 109.46964 * 29.72777 * 7 6 5 37 37 H 1.09001 * 109.46850 * 59.99562 * 8 7 6 38 38 H 1.09002 * 109.47348 * 299.99966 * 8 7 6 39 39 H 0.97002 * 120.00681 * 354.44834 * 11 9 8 40 40 H 1.08999 * 109.46930 * 65.00247 * 14 12 11 41 41 H 1.08996 * 109.46821 * 184.99952 * 14 12 11 42 42 H 0.97002 * 119.99402 * 359.97438 * 15 14 12 43 43 H 0.97000 * 120.00222 * 180.02562 * 19 18 16 44 44 H 1.08997 * 110.01795 * 300.78063 * 24 12 11 45 45 H 1.08997 * 110.48868 * 335.78550 * 25 24 12 46 46 H 1.09007 * 110.48446 * 98.42721 * 25 24 12 47 47 H 1.08998 * 110.72111 * 279.57705 * 26 25 24 48 48 H 1.08994 * 110.92252 * 156.29365 * 26 25 24 49 49 H 1.09000 * 110.48698 * 203.40793 * 27 26 25 50 50 H 1.08998 * 110.60312 * 80.81615 * 27 26 25 51 51 H 1.09000 * 110.03627 * 238.56602 * 28 24 12 52 52 H 1.09005 * 110.02998 * 359.94854 * 28 24 12 53 53 H 1.08001 * 120.79006 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2256 0.0823 0.0049 6 6 3.5948 -1.1471 -0.0008 7 6 4.4026 -2.4193 -0.0013 8 6 4.6756 -2.8496 -1.4439 9 6 5.4840 -4.1214 -1.4444 10 8 5.8093 -4.6335 -0.3943 11 7 5.8496 -4.6870 -2.6118 12 6 6.7364 -5.8532 -2.6147 13 1 6.9273 -6.1669 -1.5884 14 6 6.0716 -6.9975 -3.3825 15 7 4.7514 -7.2689 -2.8082 16 6 3.9660 -8.2591 -3.3350 17 1 4.3195 -8.8398 -4.1742 18 6 2.7153 -8.5166 -2.7905 19 7 2.2847 -7.8092 -1.7675 20 14 1.6435 -9.8669 -3.5096 21 1 2.3520 -10.5089 -4.6460 22 1 1.3601 -10.8832 -2.4646 23 1 0.3661 -9.2817 -3.9904 24 6 8.0591 -5.4863 -3.2905 25 6 9.0092 -6.7018 -3.2870 26 6 10.4114 -6.0863 -3.0500 27 6 10.1202 -4.9502 -2.0382 28 6 8.7653 -4.3729 -2.4972 29 6 2.2089 -1.1954 -0.0005 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8901 -0.5135 32 1 -0.3633 -0.8899 -0.5141 33 1 1.6674 2.1276 -0.0004 34 1 5.3046 0.1285 0.0095 35 1 3.8463 -3.2032 0.5126 36 1 5.3489 -2.2490 0.5123 37 1 5.2319 -2.0656 -1.9578 38 1 3.7294 -3.0199 -1.9575 39 1 5.5257 -4.3220 -3.4501 40 1 5.9613 -6.7165 -4.4298 41 1 6.6904 -7.8918 -3.3095 42 1 4.4341 -6.7475 -2.0542 43 1 1.4109 -7.9894 -1.3867 44 1 7.8768 -5.1578 -4.3136 45 1 8.7511 -7.3854 -2.4782 46 1 8.9746 -7.2157 -4.2477 47 1 10.8172 -5.6828 -3.9777 48 1 11.0916 -6.8215 -2.6201 49 1 10.8966 -4.1868 -2.0880 50 1 10.0422 -5.3483 -1.0265 51 1 8.9265 -3.5042 -3.1356 52 1 8.1652 -4.0933 -1.6313 53 1 1.6888 -2.1419 -0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733380035.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:00 Heat of formation + Delta-G solvation = -45.332971 kcal Electronic energy + Delta-G solvation = -30359.494059 eV Core-core repulsion = 26421.826067 eV Total energy + Delta-G solvation = -3937.667992 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -41.39105 -40.95913 -39.17865 -36.88365 -35.58215 -35.18413 -34.48812 -33.09582 -31.61325 -30.60068 -29.49626 -28.17454 -27.78641 -26.22046 -24.96705 -23.95919 -22.84620 -21.85489 -21.48784 -21.17123 -20.53925 -19.22204 -18.08999 -17.81051 -17.65393 -17.26601 -16.77198 -16.55448 -16.18949 -15.82199 -15.47535 -15.26574 -15.15757 -14.94662 -14.69450 -14.27092 -14.11836 -14.08946 -13.98204 -13.91934 -13.68086 -13.51809 -13.19940 -13.08762 -12.99774 -12.87685 -12.59837 -12.46632 -12.22557 -12.10032 -11.97845 -11.91771 -11.88827 -11.81773 -11.61212 -11.43178 -11.33606 -11.02047 -10.81219 -10.50166 -10.39147 -9.86683 -9.71940 -8.99731 -7.94528 -5.23851 0.13756 0.30568 1.45164 1.46446 1.56263 1.76922 2.31037 2.54644 2.82668 3.38712 3.48910 3.58760 3.70992 3.76262 3.82700 3.84553 3.96558 4.05156 4.06241 4.14685 4.19156 4.22681 4.25728 4.41302 4.46032 4.60011 4.61801 4.65789 4.69140 4.73781 4.76621 4.80215 4.84704 4.87429 4.89578 4.95174 4.95284 5.05670 5.11663 5.13256 5.20636 5.21360 5.29348 5.32919 5.35975 5.39948 5.48174 5.50772 5.53944 5.70726 5.79662 6.26064 6.67085 7.01098 7.32624 7.39785 8.09360 8.32542 9.28724 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.006439 B = 0.003470 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4347.707194 B = 8067.258323 C =12021.896171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.135 4.135 3 C 0.082 3.918 4 N -0.502 5.502 5 C 0.086 3.914 6 C -0.125 4.125 7 C -0.052 4.052 8 C -0.123 4.123 9 C 0.513 3.487 10 O -0.586 6.586 11 N -0.706 5.706 12 C 0.150 3.850 13 H 0.064 0.936 14 C 0.142 3.858 15 N -0.742 5.742 16 C -0.243 4.243 17 H 0.077 0.923 18 C -0.075 4.075 19 N -0.968 5.968 20 Si 0.972 3.028 21 H -0.265 1.265 22 H -0.297 1.297 23 H -0.292 1.292 24 C -0.088 4.088 25 C -0.120 4.120 26 C -0.116 4.116 27 C -0.125 4.125 28 C -0.113 4.113 29 C -0.090 4.090 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.177 0.823 34 H 0.170 0.830 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.122 0.878 38 H 0.095 0.905 39 H 0.409 0.591 40 H 0.033 0.967 41 H 0.029 0.971 42 H 0.372 0.628 43 H 0.249 0.751 44 H 0.090 0.910 45 H 0.050 0.950 46 H 0.076 0.924 47 H 0.081 0.919 48 H 0.070 0.930 49 H 0.078 0.922 50 H 0.049 0.951 51 H 0.078 0.922 52 H 0.043 0.957 53 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.997 17.445 -2.136 19.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.137 4.137 3 C -0.075 4.075 4 N -0.209 5.209 5 C -0.070 4.070 6 C -0.127 4.127 7 C -0.091 4.091 8 C -0.162 4.162 9 C 0.301 3.699 10 O -0.466 6.466 11 N -0.356 5.356 12 C 0.045 3.955 13 H 0.082 0.918 14 C 0.015 3.985 15 N -0.384 5.384 16 C -0.375 4.375 17 H 0.095 0.905 18 C -0.267 4.267 19 N -0.619 5.619 20 Si 0.801 3.199 21 H -0.189 1.189 22 H -0.224 1.224 23 H -0.219 1.219 24 C -0.108 4.108 25 C -0.158 4.158 26 C -0.154 4.154 27 C -0.162 4.162 28 C -0.150 4.150 29 C -0.115 4.115 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.194 0.806 34 H 0.187 0.813 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.140 0.860 38 H 0.113 0.887 39 H 0.245 0.755 40 H 0.051 0.949 41 H 0.047 0.953 42 H 0.204 0.796 43 H 0.058 0.942 44 H 0.108 0.892 45 H 0.069 0.931 46 H 0.095 0.905 47 H 0.100 0.900 48 H 0.089 0.911 49 H 0.097 0.903 50 H 0.068 0.932 51 H 0.096 0.904 52 H 0.062 0.938 53 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 8.664 17.761 -1.544 19.822 hybrid contribution -1.685 -1.702 -0.014 2.395 sum 6.979 16.058 -1.559 17.579 Atomic orbital electron populations 1.20794 0.88386 1.04060 1.03452 1.21220 0.98996 0.93513 0.99944 1.23076 0.89738 0.98497 0.96158 1.67705 1.09250 1.31552 1.12414 1.22882 1.01065 0.86793 0.96295 1.20850 0.94564 0.96361 1.00906 1.20121 0.99973 0.93202 0.95805 1.21593 1.01075 0.94627 0.98952 1.21083 0.79079 0.86384 0.83347 1.90677 1.57603 1.65521 1.32818 1.45760 1.49743 1.31146 1.08910 1.21193 0.89517 0.85008 0.99818 0.91758 1.21201 0.86073 0.95449 0.95801 1.42523 1.15816 1.41352 1.38745 1.19682 0.96983 1.09717 1.11117 0.90513 1.25557 0.99515 1.02443 0.99197 1.69862 1.20083 1.44484 1.27466 0.85090 0.78611 0.78614 0.77541 1.18881 1.22439 1.21896 1.22046 0.92443 0.96408 0.99910 1.22433 0.94933 0.96595 1.01882 1.22478 0.95928 0.97399 0.99549 1.22359 0.96818 0.98441 0.98612 1.22107 0.95943 0.97804 0.99172 1.21698 0.93863 0.99118 0.96863 0.89980 0.89350 0.91326 0.80571 0.81336 0.92194 0.89811 0.85971 0.88710 0.75516 0.94879 0.95319 0.79566 0.94208 0.89155 0.93125 0.90537 0.90012 0.91136 0.90337 0.93224 0.90377 0.93821 0.84904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 10.04 71.24 0.72 -0.80 16 2 C -0.13 -2.63 5.90 -19.77 -0.12 -2.75 16 3 C 0.08 1.61 10.86 84.69 0.92 2.53 16 4 N -0.50 -11.64 10.36 -195.85 -2.03 -13.67 16 5 C 0.09 1.89 10.86 84.67 0.92 2.81 16 6 C -0.12 -2.89 5.15 -19.77 -0.10 -2.99 16 7 C -0.05 -1.34 4.66 29.85 0.14 -1.20 16 8 C -0.12 -3.03 5.68 29.85 0.17 -2.86 16 9 C 0.51 16.92 7.02 87.66 0.62 17.54 16 10 O -0.59 -24.61 15.31 -3.01 -0.05 -24.66 16 11 N -0.71 -21.35 3.96 -442.53 -1.75 -23.10 16 12 C 0.15 4.92 1.73 44.99 0.08 5.00 16 13 H 0.06 2.60 6.91 -2.39 -0.02 2.59 16 14 C 0.14 5.57 5.63 86.38 0.49 6.05 16 15 N -0.74 -38.24 5.43 -343.45 -1.87 -40.11 16 16 C -0.24 -13.67 9.99 84.04 0.84 -12.83 16 17 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 18 C -0.07 -4.35 5.50 84.86 0.47 -3.88 16 19 N -0.97 -60.41 13.06 21.65 0.28 -60.13 16 20 Si 0.97 46.49 29.55 68.60 2.03 48.51 16 21 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 22 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 23 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 24 C -0.09 -2.12 2.70 -10.07 -0.03 -2.14 16 25 C -0.12 -2.75 5.36 31.70 0.17 -2.58 16 26 C -0.12 -2.12 6.91 31.91 0.22 -1.90 16 27 C -0.12 -2.49 6.83 31.67 0.22 -2.28 16 28 C -0.11 -2.49 6.22 31.32 0.19 -2.30 16 29 C -0.09 -2.05 9.55 22.47 0.21 -1.84 16 30 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.09 0.89 8.09 -2.39 -0.02 0.87 16 32 H 0.07 1.00 8.10 -2.38 -0.02 0.98 16 33 H 0.18 2.38 8.06 -2.91 -0.02 2.35 16 34 H 0.17 2.98 8.06 -2.91 -0.02 2.96 16 35 H 0.06 1.85 8.05 -2.39 -0.02 1.83 16 36 H 0.08 2.09 8.05 -2.39 -0.02 2.07 16 37 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.41 10.40 8.83 -92.71 -0.82 9.58 16 40 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.03 1.15 7.29 -2.39 -0.02 1.13 16 42 H 0.37 21.12 7.31 -92.71 -0.68 20.45 16 43 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 44 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.05 1.37 7.64 -2.39 -0.02 1.35 16 46 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 47 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 49 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 51 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 52 H 0.04 1.19 6.75 -2.38 -0.02 1.17 16 53 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -74.45 426.48 2.14 -72.31 By element: Atomic # 1 Polarization: 47.87 SS G_CDS: -0.60 Total: 47.27 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: 6.12 Total: -6.43 kcal Atomic # 7 Polarization: -131.64 SS G_CDS: -5.36 Total: -137.00 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.05 Total: -24.66 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.51 kcal Total: -74.45 2.14 -72.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733380035.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.979 kcal (2) G-P(sol) polarization free energy of solvation -74.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds