Wall clock time and date at job start Wed Apr 1 2020 05:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38221 * 120.42157 * 2 1 4 4 N 1.31860 * 120.76575 * 179.97438 * 3 2 1 5 5 C 1.31895 * 121.72097 * 359.70055 * 4 3 2 6 6 C 1.38179 * 120.76500 * 0.58962 * 5 4 3 7 7 C 1.50699 * 120.41880 * 179.70615 * 6 5 4 8 8 C 1.52998 * 109.46721 * 269.72119 * 7 6 5 9 9 C 1.50707 * 109.47114 * 179.97438 * 8 7 6 10 10 O 1.21275 * 119.99726 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99879 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99899 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47340 * 179.72132 * 12 11 9 14 14 H 1.09003 * 109.44769 * 65.05493 * 13 12 11 15 15 C 1.54862 * 109.44920 * 184.99568 * 13 12 11 16 16 C 1.47094 * 110.32046 * 191.30529 * 15 13 12 17 17 C 1.52566 * 114.32835 * 297.20360 * 16 15 13 18 18 C 1.50878 * 109.36050 * 85.01237 * 17 16 15 19 19 C 1.53952 * 110.09415 * 268.11312 * 18 17 16 20 20 N 1.44570 * 109.45125 * 305.13392 * 13 12 11 21 21 C 1.36939 * 118.64488 * 329.23153 * 20 13 12 22 22 H 1.08002 * 119.99731 * 331.39998 * 21 20 13 23 23 C 1.38801 * 120.00544 * 151.39744 * 21 20 13 24 24 N 1.31628 * 120.00077 * 344.88904 * 23 21 20 25 25 Si 1.86802 * 120.00223 * 164.88566 * 23 21 20 26 26 H 1.48499 * 109.47350 * 90.00481 * 25 23 21 27 27 H 1.48511 * 109.47140 * 210.00213 * 25 23 21 28 28 H 1.48495 * 109.47134 * 329.99965 * 25 23 21 29 29 C 1.38634 * 120.41750 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.46654 * 270.02622 * 1 2 3 31 31 H 1.08997 * 109.46646 * 30.01918 * 1 2 3 32 32 H 1.09001 * 109.47454 * 150.02410 * 1 2 3 33 33 H 1.08000 * 119.62029 * 359.95884 * 3 2 1 34 34 H 1.07996 * 119.61316 * 180.31064 * 5 4 3 35 35 H 1.08994 * 109.47848 * 149.72306 * 7 6 5 36 36 H 1.09003 * 109.46904 * 29.71524 * 7 6 5 37 37 H 1.08999 * 109.47414 * 59.99894 * 8 7 6 38 38 H 1.08997 * 109.47374 * 299.99943 * 8 7 6 39 39 H 0.97005 * 120.00137 * 359.72487 * 11 9 8 40 40 H 1.09003 * 109.47295 * 299.72115 * 12 11 9 41 41 H 1.08997 * 109.47487 * 59.72047 * 12 11 9 42 42 H 1.08998 * 109.33494 * 311.57253 * 15 13 12 43 43 H 1.09003 * 109.32648 * 71.22813 * 15 13 12 44 44 H 1.09005 * 108.51039 * 58.46010 * 16 15 13 45 45 H 1.09002 * 108.51236 * 176.10650 * 16 15 13 46 46 H 1.09011 * 109.48969 * 204.97686 * 17 16 15 47 47 H 1.09001 * 109.48873 * 325.04181 * 17 16 15 48 48 H 1.09008 * 109.36668 * 28.30770 * 18 17 16 49 49 H 1.08999 * 109.36735 * 147.91820 * 18 17 16 50 50 H 1.08998 * 108.94461 * 161.24874 * 19 18 17 51 51 H 1.09000 * 108.94732 * 279.87488 * 19 18 17 52 52 H 0.96995 * 119.99713 * 179.97438 * 24 23 21 53 53 H 1.08002 * 120.78788 * 0.04040 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5255 1.1998 0.0005 5 6 4.2257 0.0821 0.0069 6 6 3.5948 -1.1472 0.0011 7 6 4.4026 -2.4194 0.0018 8 6 4.6765 -2.8502 -1.4405 9 6 5.4849 -4.1222 -1.4399 10 8 5.8102 -4.6334 -0.3893 11 7 5.8471 -4.6909 -2.6068 12 6 6.6324 -5.9276 -2.6062 13 6 6.9012 -6.3619 -4.0485 14 1 7.5321 -5.6207 -4.5391 15 6 7.6212 -7.7329 -4.0486 16 6 8.1279 -8.0437 -5.3940 17 6 7.0427 -8.1869 -6.4568 18 6 6.6958 -6.8244 -7.0042 19 6 5.5265 -6.2167 -6.2082 20 7 5.6473 -6.4724 -4.7596 21 6 4.5253 -6.8290 -4.0602 22 1 4.6121 -7.4466 -3.1785 23 6 3.2763 -6.3969 -4.4846 24 7 3.1808 -5.4196 -5.3611 25 14 1.7310 -7.2025 -3.8118 26 1 1.2895 -6.4831 -2.5900 27 1 0.6567 -7.1446 -4.8356 28 1 2.0181 -8.6200 -3.4752 29 6 2.2089 -1.1955 0.0005 30 1 -0.3632 0.0005 1.0277 31 1 -0.3632 0.8898 -0.5141 32 1 -0.3634 -0.8902 -0.5134 33 1 1.6676 2.1276 -0.0007 34 1 5.3046 0.1283 0.0122 35 1 3.8459 -3.2031 0.5155 36 1 5.3484 -2.2489 0.5160 37 1 5.2333 -2.0666 -1.9543 38 1 3.7307 -3.0207 -1.9547 39 1 5.5841 -4.2838 -3.4471 40 1 7.5802 -5.7560 -2.0959 41 1 6.0776 -6.7102 -2.0886 42 1 8.4549 -7.7028 -3.3471 43 1 6.9196 -8.5088 -3.7420 44 1 8.8088 -7.2492 -5.6995 45 1 8.6874 -8.9779 -5.3459 46 1 7.4065 -8.8217 -7.2649 47 1 6.1552 -8.6370 -6.0119 48 1 7.5649 -6.1712 -6.9254 49 1 6.4100 -6.9178 -8.0519 50 1 5.5052 -5.1401 -6.3770 51 1 4.5920 -6.6480 -6.5671 52 1 2.3080 -5.1179 -5.6578 53 1 1.6887 -2.1420 0.0003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734103875.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:38 Heat of formation + Delta-G solvation = -19.734589 kcal Electronic energy + Delta-G solvation = -31007.544636 eV Core-core repulsion = 27070.986673 eV Total energy + Delta-G solvation = -3936.557963 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 3.52 seconds Orbital eigenvalues (eV) -41.33027 -40.64691 -39.55251 -36.06823 -35.52637 -35.16871 -34.50184 -33.25513 -32.47079 -31.26109 -28.65606 -28.18304 -27.37582 -25.78557 -25.18768 -24.02469 -23.38805 -21.82737 -21.39555 -20.78701 -20.76020 -18.41290 -17.92317 -17.68842 -17.60028 -17.25177 -16.59925 -16.37871 -16.08471 -15.84309 -15.33355 -15.22733 -15.20531 -14.88273 -14.55751 -14.38355 -14.05341 -14.00046 -13.95052 -13.68436 -13.63354 -13.38602 -13.23474 -13.11245 -13.07716 -12.86464 -12.80974 -12.69175 -12.43339 -12.38105 -12.01056 -11.97661 -11.54077 -11.39725 -11.31209 -11.19692 -11.05317 -10.78518 -10.50081 -10.40198 -10.35023 -9.74325 -9.72296 -8.53082 -7.78741 -5.22351 0.12849 0.29710 1.40110 1.46171 1.50917 1.80830 2.48468 2.54921 2.83191 3.36338 3.50165 3.61566 3.74661 3.81621 4.00925 4.03538 4.04567 4.06258 4.10925 4.18711 4.22552 4.28927 4.42177 4.46108 4.52920 4.62564 4.64625 4.67642 4.69607 4.78927 4.86445 4.86587 4.93624 5.01583 5.09565 5.12234 5.14331 5.19398 5.27152 5.27400 5.30799 5.37961 5.39027 5.43498 5.56232 5.67161 5.72421 5.77135 5.78760 5.82104 5.90623 6.48499 6.81260 7.00145 7.27880 7.44122 8.01802 8.40682 9.24625 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.012415 B = 0.002909 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.857014 B = 9623.515848 C =10724.520689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.136 4.136 3 C 0.081 3.919 4 N -0.502 5.502 5 C 0.084 3.916 6 C -0.127 4.127 7 C -0.048 4.048 8 C -0.123 4.123 9 C 0.507 3.493 10 O -0.596 6.596 11 N -0.692 5.692 12 C 0.133 3.867 13 C 0.173 3.827 14 H 0.056 0.944 15 C -0.129 4.129 16 C -0.100 4.100 17 C -0.103 4.103 18 C -0.132 4.132 19 C 0.190 3.810 20 N -0.587 5.587 21 C -0.233 4.233 22 H 0.046 0.954 23 C -0.023 4.023 24 N -0.917 5.917 25 Si 0.928 3.072 26 H -0.293 1.293 27 H -0.295 1.295 28 H -0.284 1.284 29 C -0.089 4.089 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.177 0.823 34 H 0.168 0.832 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.408 0.592 40 H 0.064 0.936 41 H 0.039 0.961 42 H 0.072 0.928 43 H 0.040 0.960 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.041 0.959 48 H 0.059 0.941 49 H 0.060 0.940 50 H 0.003 0.997 51 H 0.036 0.964 52 H 0.246 0.754 53 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.514 7.813 4.458 9.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.138 4.138 3 C -0.076 4.076 4 N -0.210 5.210 5 C -0.072 4.072 6 C -0.129 4.129 7 C -0.086 4.086 8 C -0.163 4.163 9 C 0.294 3.706 10 O -0.479 6.479 11 N -0.340 5.340 12 C 0.008 3.992 13 C 0.065 3.935 14 H 0.074 0.926 15 C -0.169 4.169 16 C -0.138 4.138 17 C -0.141 4.141 18 C -0.171 4.171 19 C 0.065 3.935 20 N -0.310 5.310 21 C -0.364 4.364 22 H 0.064 0.936 23 C -0.220 4.220 24 N -0.564 5.564 25 Si 0.759 3.241 26 H -0.221 1.221 27 H -0.221 1.221 28 H -0.210 1.210 29 C -0.115 4.115 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.194 0.806 34 H 0.185 0.815 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.127 0.873 38 H 0.104 0.896 39 H 0.244 0.756 40 H 0.083 0.917 41 H 0.057 0.943 42 H 0.091 0.909 43 H 0.059 0.941 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.060 0.940 48 H 0.078 0.922 49 H 0.079 0.921 50 H 0.021 0.979 51 H 0.055 0.945 52 H 0.055 0.945 53 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.078 8.334 5.063 10.226 hybrid contribution -1.913 -1.375 -0.164 2.361 sum 1.165 6.958 4.900 8.590 Atomic orbital electron populations 1.20787 0.88260 1.03996 1.03543 1.21237 0.99073 0.93527 0.99944 1.23088 0.89731 0.98580 0.96201 1.67703 1.09313 1.31573 1.12413 1.22891 1.01075 0.86930 0.96326 1.20900 0.94728 0.96481 1.00805 1.20116 1.00120 0.93212 0.95195 1.21540 1.00755 0.94946 0.99064 1.20953 0.79617 0.86718 0.83289 1.90605 1.58321 1.66531 1.32413 1.45793 1.53741 1.25787 1.08700 1.21416 0.93878 0.86011 0.97850 1.20670 0.87844 0.95138 0.89810 0.92605 1.21293 0.99497 0.98260 0.97871 1.20276 0.97544 1.01415 0.94548 1.20909 0.98584 0.96770 0.97838 1.21939 0.99102 0.97076 0.99007 1.20767 0.95171 0.95614 0.81944 1.43753 1.03602 1.80202 1.03398 1.18937 0.85575 1.23311 1.08527 0.93613 1.25239 0.99081 0.97441 1.00211 1.70113 1.22567 1.27720 1.35974 0.85897 0.82200 0.78746 0.77249 1.22077 1.22146 1.21024 1.21696 0.93744 0.99182 0.96877 0.89661 0.89533 0.91361 0.80574 0.81467 0.91357 0.89571 0.87299 0.89574 0.75632 0.91738 0.94277 0.90919 0.94074 0.92001 0.92037 0.91870 0.93990 0.92192 0.92140 0.97873 0.94512 0.94481 0.84593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 10.04 71.24 0.72 -0.86 16 2 C -0.14 -2.81 5.90 -19.77 -0.12 -2.93 16 3 C 0.08 1.72 10.86 84.68 0.92 2.64 16 4 N -0.50 -12.69 10.36 -195.84 -2.03 -14.72 16 5 C 0.08 2.03 10.86 84.67 0.92 2.95 16 6 C -0.13 -3.15 5.15 -19.78 -0.10 -3.26 16 7 C -0.05 -1.28 4.66 29.85 0.14 -1.14 16 8 C -0.12 -3.63 5.68 29.85 0.17 -3.47 16 9 C 0.51 18.69 7.83 87.66 0.69 19.37 16 10 O -0.60 -25.18 15.98 -3.02 -0.05 -25.23 16 11 N -0.69 -26.05 4.71 -463.06 -2.18 -28.23 16 12 C 0.13 4.95 4.52 86.38 0.39 5.34 16 13 C 0.17 6.15 2.19 45.99 0.10 6.26 16 14 H 0.06 1.89 8.07 -2.39 -0.02 1.87 16 15 C -0.13 -4.00 5.06 29.39 0.15 -3.85 16 16 C -0.10 -2.77 5.15 28.61 0.15 -2.62 16 17 C -0.10 -3.21 5.51 29.76 0.16 -3.04 16 18 C -0.13 -4.35 5.71 30.23 0.17 -4.18 16 19 C 0.19 8.05 4.66 86.49 0.40 8.45 16 20 N -0.59 -24.91 1.77 -674.27 -1.19 -26.11 16 21 C -0.23 -11.37 7.60 84.03 0.64 -10.73 16 22 H 0.05 2.38 6.76 -2.91 -0.02 2.36 16 23 C -0.02 -1.18 4.87 84.86 0.41 -0.77 16 24 N -0.92 -48.11 11.13 21.65 0.24 -47.86 16 25 Si 0.93 43.37 29.58 68.60 2.03 45.40 16 26 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 27 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 28 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 29 C -0.09 -2.13 9.55 22.47 0.21 -1.91 16 30 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.09 0.97 8.09 -2.39 -0.02 0.95 16 32 H 0.07 1.03 8.10 -2.39 -0.02 1.01 16 33 H 0.18 2.66 8.06 -2.91 -0.02 2.63 16 34 H 0.17 3.38 8.06 -2.91 -0.02 3.35 16 35 H 0.07 1.99 8.05 -2.39 -0.02 1.97 16 36 H 0.09 2.22 8.05 -2.39 -0.02 2.20 16 37 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 38 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 39 H 0.41 16.01 8.07 -92.70 -0.75 15.26 16 40 H 0.06 2.18 8.14 -2.39 -0.02 2.17 16 41 H 0.04 1.67 6.85 -2.39 -0.02 1.65 16 42 H 0.07 1.93 8.11 -2.39 -0.02 1.91 16 43 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.06 1.56 7.36 -2.38 -0.02 1.54 16 45 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 47 H 0.04 1.58 7.48 -2.39 -0.02 1.56 16 48 H 0.06 1.80 7.32 -2.38 -0.02 1.78 16 49 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 50 H 0.00 0.15 8.01 -2.39 -0.02 0.13 16 51 H 0.04 1.81 6.48 -2.39 -0.02 1.79 16 52 H 0.25 12.90 8.31 -92.71 -0.77 12.13 16 53 H 0.14 3.10 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -60.33 415.08 3.08 -57.25 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: 0.14 Total: 33.25 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: 6.13 Total: 6.25 kcal Atomic # 7 Polarization: -111.76 SS G_CDS: -5.16 Total: -116.93 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.05 Total: -25.23 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -60.33 3.08 -57.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734103875.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.520 kcal (2) G-P(sol) polarization free energy of solvation -60.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.52 seconds