Wall clock time and date at job start Wed Apr 1 2020 03:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38390 * 119.85424 * 2 1 4 4 C 1.37933 * 120.14573 * 180.23615 * 3 2 1 5 5 C 1.39597 * 119.85287 * 359.51187 * 4 3 2 6 6 C 1.47848 * 120.14556 * 180.27846 * 5 4 3 7 7 O 1.21551 * 120.00029 * 179.97438 * 6 5 4 8 8 N 1.34772 * 119.99906 * 0.02562 * 6 5 4 9 9 C 1.46501 * 120.00048 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47204 * 179.97438 * 9 8 6 11 11 N 1.46899 * 109.47067 * 179.97438 * 10 9 8 12 12 C 1.46844 * 111.00102 * 45.79443 * 11 10 9 13 13 C 1.53028 * 109.52579 * 185.83876 * 12 11 10 14 14 C 1.53121 * 109.27695 * 300.82129 * 13 12 11 15 15 N 1.46498 * 109.57579 * 177.59050 * 14 13 12 16 16 C 1.36945 * 119.99976 * 85.28271 * 15 14 13 17 17 H 1.07996 * 120.00084 * 0.02562 * 16 15 14 18 18 C 1.38815 * 119.99665 * 180.02562 * 16 15 14 19 19 N 1.31615 * 120.00327 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99590 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.46995 * 89.99922 * 20 18 16 22 22 H 1.48500 * 109.46605 * 209.99987 * 20 18 16 23 23 H 1.48500 * 109.47014 * 329.99782 * 20 18 16 24 24 C 1.53114 * 109.16421 * 57.65194 * 14 13 12 25 25 C 1.46847 * 110.99587 * 170.00323 * 11 10 9 26 26 C 1.39559 * 119.71316 * 0.25198 * 5 4 3 27 27 C 1.37980 * 119.84918 * 0.02562 * 26 5 4 28 28 C 1.50706 * 119.92477 * 179.97438 * 27 26 5 29 29 H 1.09003 * 109.47129 * 270.23352 * 1 2 3 30 30 H 1.08998 * 109.47413 * 30.22659 * 1 2 3 31 31 H 1.08993 * 109.46954 * 150.23529 * 1 2 3 32 32 H 1.07998 * 119.92444 * 0.02562 * 3 2 1 33 33 H 1.08002 * 120.07617 * 179.79393 * 4 3 2 34 34 H 0.97006 * 120.00132 * 359.97438 * 8 6 5 35 35 H 1.08994 * 109.47125 * 299.99850 * 9 8 6 36 36 H 1.08996 * 109.47077 * 60.00124 * 9 8 6 37 37 H 1.08994 * 109.47423 * 300.00239 * 10 9 8 38 38 H 1.09001 * 109.46530 * 59.99890 * 10 9 8 39 39 H 1.09004 * 109.45792 * 305.85483 * 12 11 10 40 40 H 1.09000 * 109.46274 * 65.81632 * 12 11 10 41 41 H 1.09001 * 109.50824 * 180.88153 * 13 12 11 42 42 H 1.09003 * 109.50623 * 60.75569 * 13 12 11 43 43 H 1.09007 * 109.52145 * 297.74649 * 14 13 12 44 44 H 0.97000 * 120.00587 * 265.28210 * 15 14 13 45 45 H 0.96994 * 120.00462 * 179.97438 * 19 18 16 46 46 H 1.08994 * 109.50807 * 182.40606 * 24 14 13 47 47 H 1.09006 * 109.53464 * 62.30586 * 24 14 13 48 48 H 1.09002 * 109.46607 * 294.17666 * 25 11 10 49 49 H 1.08997 * 109.46304 * 54.16052 * 25 11 10 50 50 H 1.07997 * 120.07558 * 180.02562 * 26 5 4 51 51 H 1.08999 * 109.47345 * 89.99594 * 28 27 26 52 52 H 1.09007 * 109.46402 * 209.99830 * 28 27 26 53 53 H 1.08995 * 109.46837 * 329.99224 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1958 1.2003 0.0000 4 6 3.5751 1.2073 -0.0049 5 6 4.2762 0.0001 0.0004 6 6 5.7547 0.0001 0.0014 7 8 6.3624 -1.0525 0.0065 8 7 6.4285 1.1673 -0.0023 9 6 7.8935 1.1673 -0.0019 10 6 8.4035 2.6099 -0.0072 11 7 9.8725 2.6099 -0.0062 12 6 10.3995 1.6502 -0.9848 13 6 11.9222 1.5711 -0.8548 14 6 12.5230 2.9584 -1.0979 15 7 13.9759 2.9024 -0.9185 16 6 14.7803 2.5232 -1.9599 17 1 14.3437 2.2659 -2.9136 18 6 16.1569 2.4697 -1.7897 19 7 16.6891 2.7838 -0.6276 20 14 17.2543 1.9532 -3.2104 21 1 17.6473 3.1521 -3.9935 22 1 18.4711 1.2879 -2.6794 23 1 16.5167 1.0089 -4.0876 24 6 11.9217 3.9490 -0.0972 25 6 10.3988 3.9591 -0.2492 26 6 3.5754 -1.2068 0.0054 27 6 2.1956 -1.1997 0.0044 28 6 1.4372 -2.5020 0.0092 29 1 -0.3633 0.0042 1.0277 30 1 -0.3634 0.8879 -0.5173 31 1 -0.3633 -0.8920 -0.5101 32 1 1.6522 2.1335 0.0004 33 1 4.1116 2.1446 -0.0083 34 1 5.9435 2.0074 -0.0060 35 1 8.2566 0.6566 0.8899 36 1 8.2571 0.6506 -0.8900 37 1 8.0405 3.1203 -0.8992 38 1 8.0399 3.1270 0.8807 39 1 9.9675 0.6670 -0.7980 40 1 10.1373 1.9766 -1.9911 41 1 12.3145 0.8704 -1.5918 42 1 12.1848 1.2314 0.1472 43 1 12.2936 3.2818 -2.1133 44 1 14.3682 3.1338 -0.0621 45 1 17.6510 2.7460 -0.5085 46 1 12.3135 4.9471 -0.2929 47 1 12.1842 3.6474 0.9168 48 1 10.1367 4.2748 -1.2590 49 1 9.9667 4.6528 0.4720 50 1 4.1119 -2.1441 0.0099 51 1 1.2537 -2.8119 1.0380 52 1 0.4856 -2.3700 -0.5058 53 1 2.0237 -3.2659 -0.5013 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754849693.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:57 Heat of formation + Delta-G solvation = -26.328568 kcal Electronic energy + Delta-G solvation = -29028.072287 eV Core-core repulsion = 25091.228387 eV Total energy + Delta-G solvation = -3936.843899 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.39362 -40.27798 -39.65399 -37.15582 -35.85006 -34.56350 -33.87626 -33.07535 -31.89552 -31.48855 -29.43374 -28.54997 -27.37159 -26.05330 -24.70635 -23.85869 -23.14563 -22.91201 -22.18663 -20.98228 -20.72059 -19.10098 -18.65128 -17.73421 -17.02213 -16.75986 -16.49801 -16.28877 -16.00484 -15.87657 -15.64095 -15.47418 -15.30013 -15.22448 -15.05159 -14.63876 -14.49995 -14.27496 -13.98863 -13.90454 -13.59488 -13.45819 -13.13479 -13.00592 -12.88328 -12.81825 -12.74518 -12.64994 -12.50301 -12.25825 -12.21792 -12.17512 -12.05003 -11.88744 -11.77051 -11.52347 -11.18951 -11.10741 -10.85355 -10.26432 -9.81347 -9.55757 -9.26868 -8.99523 -7.94288 -5.22580 -0.18303 0.37292 1.45657 1.47419 1.55738 1.77273 1.95778 2.55551 2.81679 3.01515 3.38420 3.62994 3.72504 3.80363 3.82058 3.91929 3.99730 4.02972 4.06797 4.18777 4.23449 4.28528 4.33164 4.35809 4.46293 4.54538 4.62552 4.69471 4.71016 4.74364 4.79595 4.81365 4.85955 4.91592 4.93765 4.95702 4.96316 4.98194 5.11348 5.17002 5.17485 5.28659 5.30176 5.35903 5.40368 5.43639 5.49206 5.60165 5.64468 5.96368 6.08837 6.14893 6.28388 6.44340 7.11447 7.33736 8.10999 8.34317 9.29297 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.026686 B = 0.001522 C = 0.001470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.002249 B =18388.847958 C =19049.254370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.064 4.064 3 C -0.126 4.126 4 C -0.084 4.084 5 C -0.158 4.158 6 C 0.554 3.446 7 O -0.586 6.586 8 N -0.708 5.708 9 C 0.119 3.881 10 C 0.054 3.946 11 N -0.544 5.544 12 C 0.061 3.939 13 C -0.124 4.124 14 C 0.171 3.829 15 N -0.738 5.738 16 C -0.240 4.240 17 H 0.072 0.928 18 C -0.076 4.076 19 N -0.970 5.970 20 Si 0.971 3.029 21 H -0.285 1.285 22 H -0.296 1.296 23 H -0.272 1.272 24 C -0.113 4.113 25 C 0.072 3.928 26 C -0.078 4.078 27 C -0.105 4.105 28 C -0.118 4.118 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.158 0.842 33 H 0.152 0.848 34 H 0.416 0.584 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.043 0.957 42 H 0.047 0.953 43 H 0.036 0.964 44 H 0.372 0.628 45 H 0.250 0.750 46 H 0.065 0.935 47 H 0.058 0.942 48 H 0.041 0.959 49 H 0.100 0.900 50 H 0.117 0.883 51 H 0.079 0.921 52 H 0.090 0.910 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -40.069 -0.391 2.305 40.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.064 4.064 3 C -0.144 4.144 4 C -0.102 4.102 5 C -0.161 4.161 6 C 0.343 3.657 7 O -0.467 6.467 8 N -0.361 5.361 9 C -0.005 4.005 10 C -0.073 4.073 11 N -0.269 5.269 12 C -0.067 4.067 13 C -0.164 4.164 14 C 0.063 3.937 15 N -0.377 5.377 16 C -0.372 4.372 17 H 0.090 0.910 18 C -0.268 4.268 19 N -0.620 5.620 20 Si 0.800 3.200 21 H -0.212 1.212 22 H -0.222 1.222 23 H -0.197 1.197 24 C -0.152 4.152 25 C -0.056 4.056 26 C -0.097 4.097 27 C -0.105 4.105 28 C -0.174 4.174 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.176 0.824 33 H 0.170 0.830 34 H 0.255 0.745 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.121 0.879 39 H 0.097 0.903 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.054 0.946 44 H 0.203 0.797 45 H 0.059 0.941 46 H 0.084 0.916 47 H 0.076 0.924 48 H 0.060 0.940 49 H 0.118 0.882 50 H 0.135 0.865 51 H 0.098 0.902 52 H 0.108 0.892 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -39.399 -1.297 2.584 39.505 hybrid contribution 1.382 0.010 -1.061 1.742 sum -38.017 -1.287 1.523 38.069 Atomic orbital electron populations 1.21013 0.88833 1.04318 1.03627 1.20411 0.97903 0.92253 0.95817 1.21364 0.93584 0.98915 1.00511 1.21539 0.95167 0.96730 0.96803 1.19846 0.91322 0.95774 1.09152 1.18705 0.88163 0.83471 0.75403 1.90767 1.71003 1.32960 1.51972 1.45654 1.07096 1.08788 1.74552 1.21408 0.79104 0.97963 1.02007 1.22225 0.87135 0.94758 1.03213 1.61916 1.06909 1.07672 1.50438 1.22106 0.94480 0.96739 0.93380 1.22107 0.94440 0.99298 1.00567 1.20489 0.82855 0.93587 0.96780 1.42640 1.01485 1.81106 1.12451 1.19615 0.88918 1.36001 0.92627 0.90964 1.25533 0.98186 1.03653 0.99430 1.69815 1.10602 1.57028 1.24605 0.85174 0.78293 0.77786 0.78736 1.21250 1.22230 1.19687 1.21746 0.95327 0.98878 0.99243 1.22007 0.93645 0.89316 1.00615 1.21195 0.94257 0.97386 0.96888 1.20007 0.92627 0.96906 1.01008 1.20933 1.00492 0.92732 1.03289 0.89723 0.89910 0.90106 0.82423 0.82998 0.74537 0.92073 0.92246 0.92456 0.87916 0.90291 0.94524 0.93822 0.93436 0.94609 0.79652 0.94082 0.91596 0.92353 0.94034 0.88212 0.86535 0.90233 0.89188 0.91739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.52 9.59 71.23 0.68 0.16 16 2 C -0.06 -0.65 5.89 -19.81 -0.12 -0.77 16 3 C -0.13 -1.14 9.68 22.23 0.22 -0.92 16 4 C -0.08 -0.96 9.54 22.53 0.21 -0.74 16 5 C -0.16 -2.95 5.87 -20.09 -0.12 -3.07 16 6 C 0.55 13.11 7.77 86.79 0.67 13.78 16 7 O -0.59 -19.45 16.35 -3.88 -0.06 -19.51 16 8 N -0.71 -12.20 5.51 -465.98 -2.57 -14.77 16 9 C 0.12 2.47 4.92 86.38 0.43 2.89 16 10 C 0.05 0.92 5.39 86.30 0.46 1.39 16 11 N -0.54 -13.32 4.81 -896.38 -4.31 -17.62 16 12 C 0.06 1.76 4.85 86.32 0.42 2.18 16 13 C -0.12 -4.66 5.68 30.64 0.17 -4.49 16 14 C 0.17 6.96 2.84 45.07 0.13 7.08 16 15 N -0.74 -38.47 5.13 -322.56 -1.65 -40.12 16 16 C -0.24 -13.70 9.93 84.03 0.83 -12.86 16 17 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 18 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 19 N -0.97 -60.71 13.06 21.65 0.28 -60.43 16 20 Si 0.97 47.27 29.55 68.60 2.03 49.30 16 21 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 22 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 23 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 24 C -0.11 -3.70 5.57 30.65 0.17 -3.53 16 25 C 0.07 1.72 5.42 86.33 0.47 2.19 16 26 C -0.08 -1.51 9.24 22.53 0.21 -1.30 16 27 C -0.11 -1.46 5.87 -19.90 -0.12 -1.58 16 28 C -0.12 -1.09 9.60 71.24 0.68 -0.40 16 29 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.08 0.16 8.08 -2.39 -0.02 0.14 16 31 H 0.08 0.25 5.93 -2.39 -0.01 0.23 16 32 H 0.16 0.49 8.06 -2.91 -0.02 0.46 16 33 H 0.15 0.77 6.41 -2.91 -0.02 0.75 16 34 H 0.42 3.95 6.51 -92.70 -0.60 3.35 16 35 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.06 1.44 6.21 -2.39 -0.01 1.43 16 37 H 0.06 0.81 8.08 -2.39 -0.02 0.79 16 38 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.08 2.21 5.81 -2.39 -0.01 2.20 16 40 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.04 1.49 8.08 -2.38 -0.02 1.47 16 44 H 0.37 20.86 7.80 -92.71 -0.72 20.13 16 45 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 46 H 0.07 2.15 8.14 -2.39 -0.02 2.14 16 47 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 48 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.10 1.87 8.12 -2.39 -0.02 1.85 16 50 H 0.12 2.58 7.65 -2.91 -0.02 2.56 16 51 H 0.08 0.62 8.14 -2.39 -0.02 0.61 16 52 H 0.09 0.48 5.93 -2.38 -0.01 0.47 16 53 H 0.06 0.65 8.08 -2.39 -0.02 0.63 16 Total: -1.00 -76.61 417.19 -0.81 -77.43 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: -0.41 Total: 29.73 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: 5.88 Total: -4.00 kcal Atomic # 7 Polarization: -124.70 SS G_CDS: -8.24 Total: -132.94 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.06 Total: -19.51 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -76.61 -0.81 -77.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754849693.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.099 kcal (2) G-P(sol) polarization free energy of solvation -76.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds