Wall clock time and date at job start Wed Apr 1 2020 04:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47218 * 2 1 4 4 N 1.46502 * 109.47182 * 179.97438 * 3 2 1 5 5 C 1.36934 * 119.99980 * 272.13816 * 4 3 2 6 6 H 1.08001 * 119.99920 * 8.56590 * 5 4 3 7 7 C 1.38808 * 120.00034 * 188.56908 * 5 4 3 8 8 N 1.31617 * 120.00422 * 24.83525 * 7 5 4 9 9 Si 1.86799 * 119.99952 * 204.83843 * 7 5 4 10 10 H 1.48502 * 109.47163 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47415 * 119.99636 * 9 7 5 12 12 H 1.48508 * 109.46968 * 239.99599 * 9 7 5 13 13 C 1.46493 * 119.99867 * 92.14148 * 4 3 2 14 14 C 1.50706 * 109.47207 * 89.99902 * 13 4 3 15 15 O 1.21280 * 119.99934 * 359.97438 * 14 13 4 16 16 N 1.34775 * 119.99878 * 179.97438 * 14 13 4 17 17 C 1.47085 * 120.88219 * 179.97438 * 16 14 13 18 18 C 1.53234 * 108.52435 * 231.21323 * 17 16 14 19 19 N 1.46903 * 109.33628 * 306.16750 * 18 17 16 20 20 C 1.46903 * 111.00030 * 187.25259 * 19 18 17 21 21 C 1.50699 * 109.47319 * 170.00122 * 20 19 18 22 22 C 1.38231 * 119.99957 * 90.00329 * 21 20 19 23 23 C 1.38237 * 119.99956 * 179.97438 * 22 21 20 24 24 C 1.38241 * 119.99981 * 359.97157 * 23 22 21 25 25 C 1.38236 * 119.99729 * 0.02562 * 24 23 22 26 26 C 1.38230 * 120.00077 * 0.06276 * 25 24 23 27 27 C 1.46898 * 111.26754 * 63.10887 * 19 18 17 28 28 C 1.47084 * 120.88210 * 0.02770 * 16 14 13 29 29 H 1.09001 * 109.47134 * 60.00506 * 1 2 3 30 30 H 1.09005 * 109.47078 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47700 * 300.00252 * 1 2 3 32 32 H 1.08999 * 109.47700 * 239.99748 * 2 1 3 33 33 H 1.09001 * 109.47134 * 119.99494 * 2 1 3 34 34 H 1.09006 * 109.47360 * 59.99412 * 3 2 1 35 35 H 1.09000 * 109.47159 * 299.99940 * 3 2 1 36 36 H 0.96999 * 120.00280 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.47366 * 329.99989 * 13 4 3 38 38 H 1.09001 * 109.46851 * 209.99518 * 13 4 3 39 39 H 1.08994 * 109.62284 * 111.49590 * 17 16 14 40 40 H 1.09003 * 109.78185 * 351.01416 * 17 16 14 41 41 H 1.08993 * 109.49410 * 186.21559 * 18 17 16 42 42 H 1.09000 * 109.49665 * 66.12829 * 18 17 16 43 43 H 1.09004 * 109.46991 * 50.00053 * 20 19 18 44 44 H 1.08995 * 109.47321 * 290.00031 * 20 19 18 45 45 H 1.07995 * 120.00210 * 359.97375 * 22 21 20 46 46 H 1.07999 * 119.99953 * 179.97438 * 23 22 21 47 47 H 1.08002 * 119.99794 * 179.72672 * 24 23 22 48 48 H 1.08004 * 119.99405 * 179.97438 * 25 24 23 49 49 H 1.08003 * 119.99683 * 179.97438 * 26 25 24 50 50 H 1.09000 * 109.49857 * 56.85459 * 27 19 18 51 51 H 1.09002 * 109.49249 * 176.93436 * 27 19 18 52 52 H 1.09004 * 109.62488 * 248.49786 * 28 16 14 53 53 H 1.08996 * 109.62844 * 9.08076 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.3984 1.1860 6 1 3.6578 1.2246 2.1100 7 6 5.5656 1.5771 1.1999 8 7 6.1519 2.2490 0.2318 9 14 6.5860 0.8641 2.5927 10 1 5.6947 0.1589 3.5486 11 1 7.5769 -0.0941 2.0402 12 1 7.2975 1.9610 3.2970 13 6 4.2380 1.4897 -1.2669 14 6 4.4893 2.9258 -1.6487 15 8 4.0946 3.8216 -0.9327 16 7 5.1527 3.2145 -2.7857 17 6 5.4082 4.6091 -3.1774 18 6 4.9400 4.8022 -4.6236 19 7 5.5742 3.7905 -5.4794 20 6 5.2875 4.0459 -6.8974 21 6 6.1437 3.1479 -7.7526 22 6 5.6808 1.8991 -8.1227 23 6 6.4660 1.0756 -8.9077 24 6 7.7140 1.5012 -9.3231 25 6 8.1768 2.7501 -8.9530 26 6 7.3924 3.5728 -8.1666 27 6 5.1626 2.4337 -5.0952 28 6 5.6395 2.1435 -3.6685 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 7.1139 2.3735 0.2414 37 1 3.6492 1.0045 -2.0454 38 1 5.1904 0.9714 -1.1553 39 1 6.4753 4.8195 -3.1067 40 1 4.8578 5.2833 -2.5212 41 1 5.2216 5.7974 -4.9672 42 1 3.8566 4.6929 -4.6729 43 1 5.5076 5.0877 -7.1307 44 1 4.2355 3.8431 -7.0976 45 1 4.7057 1.5667 -7.7986 46 1 6.1045 0.0997 -9.1965 47 1 8.3292 0.8560 -9.9327 48 1 9.1520 3.0824 -9.2773 49 1 7.7542 4.5484 -7.8771 50 1 4.0761 2.3573 -5.1379 51 1 5.6056 1.7114 -5.7809 52 1 6.7290 2.1167 -3.6452 53 1 5.2396 1.1854 -3.3367 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058911708.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:11 Heat of formation + Delta-G solvation = 13.450157 kcal Electronic energy + Delta-G solvation = -31252.509333 eV Core-core repulsion = 27317.390368 eV Total energy + Delta-G solvation = -3935.118964 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -40.96916 -40.10265 -38.71036 -37.37945 -35.47038 -34.64055 -32.81587 -32.32142 -31.97999 -31.59654 -29.46863 -28.01441 -27.29824 -25.41380 -24.73417 -23.81973 -23.28092 -22.28697 -21.83876 -21.55961 -19.91085 -18.55100 -17.88881 -17.55616 -17.08539 -16.60695 -16.32103 -16.17986 -16.07529 -15.94262 -15.77126 -15.45050 -15.35379 -15.13313 -14.71984 -14.46741 -14.22415 -14.04892 -13.80546 -13.67893 -13.43939 -13.30118 -13.17078 -13.04082 -12.78818 -12.63576 -12.53710 -12.33908 -12.21330 -12.18717 -12.12984 -12.01862 -11.96357 -11.78780 -11.75337 -11.63641 -11.37009 -10.68050 -10.18859 -9.73956 -9.65956 -9.47404 -9.09362 -8.83448 -7.85674 -5.12296 0.48645 0.58959 1.45772 1.48771 1.58602 2.30302 2.46462 2.63070 2.76892 3.21096 3.29192 3.61857 3.82231 3.91053 4.00529 4.06673 4.21104 4.23972 4.24242 4.28914 4.33417 4.37805 4.41391 4.43078 4.51965 4.62606 4.64431 4.67583 4.75444 4.76707 4.78128 4.82815 4.85725 4.92817 4.93453 4.97697 5.12471 5.18544 5.21484 5.24472 5.26501 5.27256 5.43527 5.62727 5.63457 5.67802 5.70549 5.76477 5.92517 6.02808 6.07571 6.20736 6.27792 6.87996 7.15971 7.81037 8.02146 8.28680 9.21163 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.011959 B = 0.002792 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.691471 B =10025.850925 C =10701.132133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 C 0.151 3.849 4 N -0.593 5.593 5 C -0.252 4.252 6 H 0.070 0.930 7 C -0.050 4.050 8 N -0.915 5.915 9 Si 0.961 3.039 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.305 1.305 13 C 0.172 3.828 14 C 0.534 3.466 15 O -0.588 6.588 16 N -0.626 5.626 17 C 0.122 3.878 18 C 0.060 3.940 19 N -0.537 5.537 20 C 0.097 3.903 21 C -0.087 4.087 22 C -0.124 4.124 23 C -0.129 4.129 24 C -0.129 4.129 25 C -0.131 4.131 26 C -0.111 4.111 27 C 0.050 3.950 28 C 0.124 3.876 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.047 0.953 34 H 0.028 0.972 35 H 0.035 0.965 36 H 0.244 0.756 37 H 0.062 0.938 38 H 0.083 0.917 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.104 0.896 42 H 0.031 0.969 43 H 0.094 0.906 44 H 0.047 0.953 45 H 0.126 0.874 46 H 0.138 0.862 47 H 0.138 0.862 48 H 0.136 0.864 49 H 0.126 0.874 50 H 0.037 0.963 51 H 0.100 0.900 52 H 0.057 0.943 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.188 -2.090 -22.112 22.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.169 4.169 3 C 0.025 3.975 4 N -0.313 5.313 5 C -0.382 4.382 6 H 0.088 0.912 7 C -0.245 4.245 8 N -0.562 5.562 9 Si 0.790 3.210 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.233 1.233 13 C 0.041 3.959 14 C 0.324 3.676 15 O -0.466 6.466 16 N -0.363 5.363 17 C -0.001 4.001 18 C -0.068 4.068 19 N -0.262 5.262 20 C -0.030 4.030 21 C -0.088 4.088 22 C -0.143 4.143 23 C -0.147 4.147 24 C -0.147 4.147 25 C -0.149 4.149 26 C -0.130 4.130 27 C -0.078 4.078 28 C 0.001 3.999 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.122 0.878 42 H 0.049 0.951 43 H 0.112 0.888 44 H 0.065 0.935 45 H 0.144 0.856 46 H 0.155 0.845 47 H 0.156 0.844 48 H 0.154 0.846 49 H 0.144 0.856 50 H 0.055 0.945 51 H 0.118 0.882 52 H 0.075 0.925 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.794 -1.560 -21.602 21.673 hybrid contribution 0.199 0.150 1.087 1.115 sum -0.594 -1.411 -20.515 20.572 Atomic orbital electron populations 1.21663 0.94310 1.02099 1.01687 1.21922 0.96170 0.97523 1.01238 1.20905 0.82728 0.95410 0.98410 1.44194 1.01129 1.84033 1.01973 1.19451 0.90193 1.41365 0.87222 0.91183 1.25336 0.98181 1.00369 1.00598 1.70087 1.08707 1.41089 1.36362 0.85305 0.78760 0.77604 0.79307 1.19616 1.21208 1.23341 1.20649 0.97330 0.91144 0.86732 1.22129 0.74350 0.93524 0.77622 1.90450 1.54524 1.50360 1.51271 1.48307 1.58120 1.06579 1.23283 1.21367 0.99860 0.84139 0.94781 1.22348 0.96176 0.96656 0.91638 1.61913 1.59191 1.02335 1.02743 1.21058 0.96711 0.99543 0.85653 1.19813 0.95644 0.95367 0.97950 1.21256 1.00537 0.93865 0.98611 1.21401 0.94856 1.00353 0.98055 1.21459 0.96439 0.96537 1.00282 1.21424 1.00412 0.94713 0.98331 1.21205 0.93719 1.00568 0.97474 1.22493 0.98183 0.91342 0.95794 1.21658 0.98994 0.90483 0.88807 0.92417 0.91449 0.93111 0.92479 0.93438 0.95369 0.94616 0.94675 0.91968 0.89880 0.92835 0.92072 0.87807 0.95055 0.88785 0.93515 0.85580 0.84460 0.84422 0.84643 0.85557 0.94512 0.88166 0.92470 0.89526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.91 71.98 0.71 -2.98 16 2 C -0.13 -4.44 6.25 30.59 0.19 -4.24 16 3 C 0.15 6.51 5.67 86.38 0.49 7.00 16 4 N -0.59 -30.33 2.02 -706.34 -1.43 -31.76 16 5 C -0.25 -14.24 9.70 84.03 0.82 -13.42 16 6 H 0.07 3.94 7.94 -2.91 -0.02 3.91 16 7 C -0.05 -2.83 4.90 84.86 0.42 -2.41 16 8 N -0.92 -53.63 8.96 21.65 0.19 -53.43 16 9 Si 0.96 46.18 29.62 68.60 2.03 48.21 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 11 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 12 H -0.31 -15.15 7.11 99.48 0.71 -14.44 16 13 C 0.17 8.12 3.79 85.64 0.32 8.44 16 14 C 0.53 26.34 5.77 87.66 0.51 26.84 16 15 O -0.59 -34.73 15.62 -3.03 -0.05 -34.78 16 16 N -0.63 -24.97 3.01 -818.00 -2.46 -27.43 16 17 C 0.12 4.38 6.59 86.35 0.57 4.95 16 18 C 0.06 1.57 5.62 86.38 0.49 2.05 16 19 N -0.54 -12.78 4.62 -899.91 -4.16 -16.93 16 20 C 0.10 1.80 5.12 85.56 0.44 2.24 16 21 C -0.09 -1.63 4.89 -19.87 -0.10 -1.72 16 22 C -0.12 -2.15 7.86 22.27 0.18 -1.97 16 23 C -0.13 -2.01 10.05 22.27 0.22 -1.79 16 24 C -0.13 -1.96 10.05 22.27 0.22 -1.74 16 25 C -0.13 -2.12 10.05 22.27 0.22 -1.89 16 26 C -0.11 -2.01 9.70 22.27 0.22 -1.79 16 27 C 0.05 1.24 5.34 86.37 0.46 1.70 16 28 C 0.12 3.94 6.50 86.34 0.56 4.50 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.03 1.27 8.06 -2.38 -0.02 1.26 16 35 H 0.04 1.49 8.06 -2.39 -0.02 1.47 16 36 H 0.24 14.15 8.31 -92.71 -0.77 13.38 16 37 H 0.06 2.50 7.59 -2.39 -0.02 2.48 16 38 H 0.08 4.26 6.15 -2.39 -0.01 4.24 16 39 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.06 2.51 7.07 -2.39 -0.02 2.49 16 41 H 0.10 2.18 7.99 -2.39 -0.02 2.16 16 42 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.09 1.51 7.91 -2.38 -0.02 1.50 16 44 H 0.05 0.83 8.07 -2.39 -0.02 0.81 16 45 H 0.13 1.92 7.93 -2.91 -0.02 1.89 16 46 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 47 H 0.14 1.48 8.06 -2.91 -0.02 1.45 16 48 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 49 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 50 H 0.04 0.90 8.14 -2.39 -0.02 0.89 16 51 H 0.10 2.18 5.66 -2.39 -0.01 2.16 16 52 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 53 H 0.09 2.68 6.02 -2.39 -0.01 2.66 16 Total: -1.00 -72.82 415.19 1.93 -70.90 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.86 Total: 21.46 kcal Atomic # 6 Polarization: 16.83 SS G_CDS: 6.94 Total: 23.77 kcal Atomic # 7 Polarization: -121.71 SS G_CDS: -7.85 Total: -129.56 kcal Atomic # 8 Polarization: -34.73 SS G_CDS: -0.05 Total: -34.78 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -72.82 1.93 -70.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058911708.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.345 kcal (2) G-P(sol) polarization free energy of solvation -72.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds