Wall clock time and date at job start Wed Apr 1 2020 03:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47051 * 2 1 4 4 C 1.52999 * 109.47066 * 120.00258 * 2 1 3 5 5 H 1.08997 * 109.29910 * 306.43502 * 4 2 1 6 6 C 1.50258 * 109.38552 * 66.17232 * 4 2 1 7 7 O 1.21277 * 118.62777 * 317.35614 * 6 4 2 8 8 N 1.33720 * 122.74743 * 137.35629 * 6 4 2 9 9 C 1.46004 * 122.92881 * 358.31111 * 8 6 4 10 10 C 1.52992 * 110.04260 * 18.16419 * 9 8 6 11 11 N 1.46901 * 109.38508 * 186.68819 * 4 2 1 12 12 C 1.46894 * 111.00312 * 312.91570 * 11 4 2 13 13 C 1.50698 * 109.47550 * 170.87729 * 12 11 4 14 14 C 1.38288 * 119.92330 * 87.95991 * 13 12 11 15 15 C 1.38105 * 120.07470 * 179.97438 * 14 13 12 16 16 C 1.38908 * 119.92425 * 359.97438 * 15 14 13 17 17 N 1.39681 * 120.07567 * 179.97438 * 16 15 14 18 18 C 1.46496 * 119.99750 * 0.02562 * 17 16 15 19 19 C 1.46496 * 119.99970 * 179.97438 * 17 16 15 20 20 C 1.50700 * 109.47396 * 270.00358 * 19 17 16 21 21 H 1.07992 * 119.99711 * 359.97438 * 20 19 17 22 22 C 1.37878 * 119.99856 * 180.02562 * 20 19 17 23 23 N 1.31513 * 120.00234 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99792 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46739 * 90.00188 * 24 22 20 26 26 H 1.48501 * 109.46874 * 210.00031 * 24 22 20 27 27 H 1.48494 * 109.47005 * 330.00174 * 24 22 20 28 28 C 1.38916 * 119.85062 * 0.25845 * 16 15 14 29 29 C 1.38097 * 119.92408 * 359.48908 * 28 16 15 30 30 H 1.09004 * 109.47055 * 173.84241 * 1 2 3 31 31 H 1.08998 * 109.46831 * 293.84252 * 1 2 3 32 32 H 1.08998 * 109.46622 * 53.84522 * 1 2 3 33 33 H 1.09003 * 109.46702 * 240.00266 * 2 1 3 34 34 H 1.08999 * 109.47112 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.47259 * 300.00034 * 3 2 1 36 36 H 1.09004 * 109.46702 * 60.00259 * 3 2 1 37 37 H 0.97001 * 118.53527 * 178.33515 * 8 6 4 38 38 H 1.09000 * 109.37764 * 257.98617 * 9 8 6 39 39 H 1.09007 * 109.28137 * 138.27746 * 9 8 6 40 40 H 1.08996 * 109.59116 * 189.93117 * 10 9 8 41 41 H 1.08997 * 109.59532 * 69.47942 * 10 9 8 42 42 H 1.08998 * 109.47243 * 50.87640 * 12 11 4 43 43 H 1.09003 * 109.46982 * 290.87823 * 12 11 4 44 44 H 1.08000 * 119.96713 * 0.02562 * 14 13 12 45 45 H 1.07995 * 120.03669 * 180.02562 * 15 14 13 46 46 H 1.09006 * 109.46549 * 269.99938 * 18 17 16 47 47 H 1.08997 * 109.47194 * 29.99724 * 18 17 16 48 48 H 1.08996 * 109.47253 * 150.00225 * 18 17 16 49 49 H 1.09002 * 109.47222 * 30.00294 * 19 17 16 50 50 H 1.09005 * 109.47350 * 149.99628 * 19 17 16 51 51 H 0.96998 * 119.99703 * 179.97438 * 23 22 20 52 52 H 1.08002 * 120.03912 * 179.72691 * 28 16 15 53 53 H 1.08005 * 119.96445 * 180.25315 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.5841 -0.2762 2.1335 6 6 1.6664 -2.1747 1.1734 7 8 0.5548 -2.4696 0.7885 8 7 2.5084 -3.1567 1.5125 9 6 3.8784 -2.9106 1.9531 10 6 4.0348 -1.4528 2.3901 11 7 3.5002 -0.5820 1.3307 12 6 4.1304 -0.8786 0.0374 13 6 5.5910 -0.5119 0.0944 14 6 6.5172 -1.4360 0.5421 15 6 7.8566 -1.1035 0.5951 16 6 8.2730 0.1607 0.1975 17 7 9.6268 0.5006 0.2503 18 6 10.6094 -0.4769 0.7249 19 6 10.0642 1.8341 -0.1699 20 6 10.3850 1.8168 -1.6423 21 1 10.2746 0.9037 -2.2082 22 6 10.8205 2.9665 -2.2664 23 7 10.9554 4.0783 -1.5771 24 14 11.2189 2.9449 -4.0914 25 1 9.9991 3.2819 -4.8683 26 1 12.2801 3.9433 -4.3782 27 1 11.6942 1.5923 -4.4782 28 6 7.3393 1.0882 -0.2471 29 6 6.0022 0.7473 -0.3025 30 1 -0.3633 -1.0218 -0.1102 31 1 -0.3633 0.4154 0.9400 32 1 -0.3632 0.6063 -0.8298 33 1 1.8933 -0.5138 -0.8901 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9562 0.8901 37 1 2.1950 -4.0733 1.4633 38 1 4.5650 -3.1177 1.1323 39 1 4.1099 -3.5665 2.7925 40 1 5.0899 -1.2299 2.5487 41 1 3.4810 -1.2867 3.3141 42 1 3.6410 -0.3004 -0.7463 43 1 4.0310 -1.9421 -0.1798 44 1 6.1930 -2.4191 0.8499 45 1 8.5795 -1.8257 0.9444 46 1 10.7295 -0.3768 1.8036 47 1 10.2634 -1.4834 0.4897 48 1 11.5662 -0.2977 0.2345 49 1 9.2682 2.5542 0.0200 50 1 10.9534 2.1189 0.3925 51 1 11.2622 4.8870 -2.0162 52 1 7.6591 2.0734 -0.5528 53 1 5.2762 1.4666 -0.6520 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093055235.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:52 Heat of formation + Delta-G solvation = -4.249054 kcal Electronic energy + Delta-G solvation = -31392.416103 eV Core-core repulsion = 27456.529643 eV Total energy + Delta-G solvation = -3935.886460 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.18347 -40.35372 -38.66567 -37.04443 -36.99092 -34.80418 -34.02899 -31.90979 -31.59963 -30.34065 -29.59952 -28.39249 -27.64530 -26.39497 -25.58526 -24.40655 -23.32804 -22.85655 -21.59755 -21.20787 -19.61627 -18.62183 -18.39120 -17.99814 -17.70434 -17.06229 -16.84450 -16.51837 -16.28175 -15.93722 -15.65389 -15.30205 -15.25967 -15.09745 -14.52578 -14.27570 -14.22554 -14.04506 -13.96156 -13.83865 -13.39404 -13.17104 -13.14084 -13.08916 -12.98657 -12.88710 -12.69466 -12.61107 -12.49707 -12.43303 -12.29390 -12.18516 -11.96863 -11.73477 -11.68217 -11.43580 -11.29985 -10.91126 -10.62922 -10.35798 -10.09456 -9.60711 -9.18158 -8.34267 -7.76237 -6.35898 0.76201 0.86792 1.37792 1.38870 1.49094 1.52892 2.19041 2.35344 2.67302 2.84244 3.07776 3.30949 3.49623 3.69272 3.91210 3.97356 4.03423 4.07595 4.18473 4.25732 4.33190 4.41837 4.46474 4.55581 4.62195 4.63283 4.69768 4.73265 4.76812 4.88072 4.89500 4.91991 4.93027 5.01904 5.05669 5.09155 5.16018 5.18732 5.24252 5.27610 5.36922 5.46001 5.57899 5.62428 5.68413 5.73908 5.76762 5.91135 5.99289 6.06133 6.09172 6.24885 6.27145 6.53080 6.85317 6.98670 7.17100 7.36152 8.84516 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.015639 B = 0.002623 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.951639 B =10671.746931 C =11788.325269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.076 4.076 3 C -0.138 4.138 4 C 0.081 3.919 5 H 0.121 0.879 6 C 0.488 3.512 7 O -0.580 6.580 8 N -0.714 5.714 9 C 0.068 3.932 10 C 0.031 3.969 11 N -0.514 5.514 12 C 0.098 3.902 13 C -0.149 4.149 14 C -0.060 4.060 15 C -0.214 4.214 16 C 0.214 3.786 17 N -0.632 5.632 18 C 0.098 3.902 19 C 0.267 3.733 20 C -0.540 4.540 21 H 0.049 0.951 22 C 0.013 3.987 23 N -0.927 5.927 24 Si 0.959 3.041 25 H -0.275 1.275 26 H -0.279 1.279 27 H -0.269 1.269 28 C -0.216 4.216 29 C -0.054 4.054 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.403 0.597 38 H 0.078 0.922 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.047 0.953 44 H 0.145 0.855 45 H 0.134 0.866 46 H 0.053 0.947 47 H 0.080 0.920 48 H 0.053 0.947 49 H 0.011 0.989 50 H 0.008 0.992 51 H 0.267 0.733 52 H 0.092 0.908 53 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.680 -14.314 8.869 23.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.095 4.095 3 C -0.196 4.196 4 C -0.031 4.031 5 H 0.138 0.862 6 C 0.273 3.727 7 O -0.460 6.460 8 N -0.366 5.366 9 C -0.057 4.057 10 C -0.097 4.097 11 N -0.237 5.237 12 C -0.028 4.028 13 C -0.152 4.152 14 C -0.079 4.079 15 C -0.236 4.236 16 C 0.109 3.891 17 N -0.340 5.340 18 C -0.045 4.045 19 C 0.145 3.855 20 C -0.579 4.579 21 H 0.068 0.932 22 C -0.186 4.186 23 N -0.566 5.566 24 Si 0.784 3.216 25 H -0.201 1.201 26 H -0.204 1.204 27 H -0.193 1.193 28 C -0.239 4.239 29 C -0.073 4.073 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.239 0.761 38 H 0.096 0.904 39 H 0.129 0.871 40 H 0.123 0.877 41 H 0.111 0.889 42 H 0.103 0.897 43 H 0.066 0.934 44 H 0.162 0.838 45 H 0.152 0.848 46 H 0.071 0.929 47 H 0.098 0.902 48 H 0.072 0.928 49 H 0.029 0.971 50 H 0.026 0.974 51 H 0.076 0.924 52 H 0.110 0.890 53 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.749 -13.504 8.824 22.544 hybrid contribution 0.450 -0.512 -1.227 1.404 sum -15.300 -14.016 7.597 22.096 Atomic orbital electron populations 1.22015 0.94050 1.03060 1.01749 1.21019 0.96577 0.96821 0.95097 1.21794 1.01885 0.94009 1.01886 1.22018 0.89477 0.89492 1.02081 0.86161 1.21530 0.84588 0.90630 0.75917 1.90648 1.22707 1.84481 1.48130 1.45671 1.14069 1.09770 1.67083 1.22364 0.81766 0.99682 1.01868 1.22693 1.03556 0.88482 0.94977 1.62660 1.01865 1.53338 1.05884 1.21062 0.90829 0.99399 0.91547 1.19275 0.94536 0.94444 1.06901 1.20940 0.91316 0.98991 0.96620 1.20775 0.97388 0.94968 1.10517 1.18238 0.83912 0.93973 0.92984 1.46960 1.03751 1.14723 1.68557 1.21597 0.91952 0.92470 0.98454 1.18749 0.93633 0.79706 0.93394 1.21783 1.44667 0.95869 0.95583 0.93249 1.25761 0.95203 0.94938 1.02726 1.70033 1.47508 1.01135 1.37963 0.85535 0.78080 0.78059 0.79894 1.20082 1.20387 1.19335 1.20758 0.94017 0.99701 1.09386 1.20746 0.93629 0.96267 0.96670 0.91479 0.92608 0.92378 0.91907 0.91835 0.92509 0.92159 0.76061 0.90446 0.87117 0.87710 0.88923 0.89665 0.93447 0.83793 0.84806 0.92887 0.90157 0.92810 0.97110 0.97422 0.92425 0.89022 0.86247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 8.71 71.98 0.63 -2.32 16 2 C -0.08 -1.45 1.80 -10.79 -0.02 -1.47 16 3 C -0.14 -2.57 8.62 71.98 0.62 -1.95 16 4 C 0.08 1.47 2.05 44.03 0.09 1.56 16 5 H 0.12 2.06 8.13 -2.39 -0.02 2.04 16 6 C 0.49 9.78 6.84 87.68 0.60 10.38 16 7 O -0.58 -15.52 14.45 -3.02 -0.04 -15.57 16 8 N -0.71 -10.23 5.35 -466.08 -2.49 -12.72 16 9 C 0.07 0.69 6.22 86.47 0.54 1.23 16 10 C 0.03 0.42 5.44 86.25 0.47 0.89 16 11 N -0.51 -9.12 4.17 -880.02 -3.67 -12.78 16 12 C 0.10 1.97 3.50 85.56 0.30 2.27 16 13 C -0.15 -3.73 4.95 -19.84 -0.10 -3.83 16 14 C -0.06 -1.39 7.91 22.25 0.18 -1.22 16 15 C -0.21 -6.19 9.21 22.40 0.21 -5.98 16 16 C 0.21 8.15 6.55 38.21 0.25 8.40 16 17 N -0.63 -26.52 2.99 -726.56 -2.17 -28.70 16 18 C 0.10 3.22 10.19 127.77 1.30 4.52 16 19 C 0.27 13.76 4.92 85.63 0.42 14.18 16 20 C -0.54 -29.94 9.39 25.60 0.24 -29.70 16 21 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 22 C 0.01 0.72 5.46 84.65 0.46 1.18 16 23 N -0.93 -54.03 13.29 21.45 0.28 -53.75 16 24 Si 0.96 43.70 29.54 68.60 2.03 45.72 16 25 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 26 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 27 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 28 C -0.22 -8.57 9.21 22.40 0.21 -8.37 16 29 C -0.05 -1.70 9.68 22.25 0.22 -1.49 16 30 H 0.07 1.60 5.52 -2.39 -0.01 1.59 16 31 H 0.05 1.00 8.13 -2.39 -0.02 0.98 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.06 1.31 6.56 -2.39 -0.02 1.29 16 34 H 0.06 1.33 5.60 -2.39 -0.01 1.31 16 35 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.40 5.02 8.84 -92.71 -0.82 4.20 16 38 H 0.08 0.81 4.61 -2.39 -0.01 0.80 16 39 H 0.11 0.57 8.14 -2.38 -0.02 0.55 16 40 H 0.10 1.54 6.44 -2.39 -0.02 1.53 16 41 H 0.09 1.09 8.08 -2.39 -0.02 1.07 16 42 H 0.09 1.82 4.71 -2.39 -0.01 1.81 16 43 H 0.05 0.90 5.62 -2.39 -0.01 0.88 16 44 H 0.14 2.26 5.68 -2.91 -0.02 2.24 16 45 H 0.13 3.28 6.14 -2.91 -0.02 3.26 16 46 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 47 H 0.08 2.17 6.20 -2.39 -0.01 2.16 16 48 H 0.05 1.87 8.07 -2.39 -0.02 1.85 16 49 H 0.01 0.61 6.18 -2.39 -0.01 0.60 16 50 H 0.01 0.42 8.07 -2.38 -0.02 0.40 16 51 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 52 H 0.09 4.31 6.14 -2.91 -0.02 4.29 16 53 H 0.12 3.48 7.47 -2.91 -0.02 3.46 16 Total: -1.00 -67.07 394.80 0.66 -66.41 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 0.12 Total: 23.09 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: 6.61 Total: -11.70 kcal Atomic # 7 Polarization: -99.90 SS G_CDS: -8.05 Total: -107.95 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.04 Total: -15.57 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -67.07 0.66 -66.41 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093055235.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.164 kcal (2) G-P(sol) polarization free energy of solvation -67.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds