Wall clock time and date at job start Wed Apr 1 2020 03:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47218 * 2 1 4 4 C 1.53005 * 109.47110 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.29963 * 301.51343 * 4 3 2 6 6 C 1.50252 * 109.38697 * 181.77472 * 4 3 2 7 7 O 1.21280 * 118.62393 * 42.63884 * 6 4 3 8 8 N 1.33722 * 122.74994 * 222.64190 * 6 4 3 9 9 C 1.45999 * 122.92809 * 1.68733 * 8 6 4 10 10 C 1.52990 * 110.04387 * 341.83614 * 9 8 6 11 11 N 1.46905 * 109.38860 * 61.25239 * 4 3 2 12 12 C 1.46897 * 110.99464 * 47.09104 * 11 4 3 13 13 C 1.50698 * 109.47036 * 190.16550 * 12 11 4 14 14 C 1.38292 * 119.92829 * 89.99584 * 13 12 11 15 15 C 1.38102 * 120.07649 * 179.97438 * 14 13 12 16 16 C 1.38907 * 119.92579 * 0.02562 * 15 14 13 17 17 N 1.39671 * 120.07478 * 179.97438 * 16 15 14 18 18 C 1.46499 * 119.99885 * 0.27620 * 17 16 15 19 19 C 1.46506 * 119.99948 * 180.02562 * 17 16 15 20 20 C 1.50694 * 109.47211 * 90.00160 * 19 17 16 21 21 H 1.08004 * 119.99801 * 359.97438 * 20 19 17 22 22 C 1.37872 * 120.00256 * 179.97438 * 20 19 17 23 23 N 1.31524 * 119.99703 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00497 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46714 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47399 * 119.99985 * 24 22 20 27 27 H 1.48504 * 109.47348 * 240.00372 * 24 22 20 28 28 C 1.38912 * 119.85032 * 0.25641 * 16 15 14 29 29 C 1.38108 * 119.92272 * 359.48857 * 28 16 15 30 30 H 1.09003 * 109.47075 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46471 * 299.99830 * 1 2 3 32 32 H 1.08996 * 109.47337 * 59.99673 * 1 2 3 33 33 H 1.09009 * 109.46819 * 240.00493 * 2 1 3 34 34 H 1.09005 * 109.47512 * 120.00495 * 2 1 3 35 35 H 1.08996 * 109.47047 * 60.00506 * 3 2 1 36 36 H 1.08996 * 109.47233 * 300.00390 * 3 2 1 37 37 H 0.96999 * 118.52921 * 181.70424 * 8 6 4 38 38 H 1.09003 * 109.37713 * 221.66238 * 9 8 6 39 39 H 1.08997 * 109.37851 * 102.01547 * 9 8 6 40 40 H 1.08999 * 109.59420 * 290.52368 * 10 9 8 41 41 H 1.08995 * 109.59443 * 170.06656 * 10 9 8 42 42 H 1.08997 * 109.47419 * 70.16530 * 12 11 4 43 43 H 1.09000 * 109.47503 * 310.16064 * 12 11 4 44 44 H 1.08005 * 119.95930 * 0.02562 * 14 13 12 45 45 H 1.08000 * 120.03441 * 180.02562 * 15 14 13 46 46 H 1.09000 * 109.47199 * 269.72136 * 18 17 16 47 47 H 1.08999 * 109.47268 * 29.72874 * 18 17 16 48 48 H 1.09004 * 109.46902 * 149.72326 * 18 17 16 49 49 H 1.09006 * 109.46514 * 209.99799 * 19 17 16 50 50 H 1.08999 * 109.46978 * 329.99767 * 19 17 16 51 51 H 0.97000 * 119.99515 * 180.02562 * 23 22 20 52 52 H 1.08005 * 120.03689 * 179.72516 * 28 16 15 53 53 H 1.08002 * 119.96005 * 180.25517 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9307 0.9046 0.8762 6 6 4.0689 2.8591 0.0432 7 8 3.5233 3.6443 0.7894 8 7 5.0891 3.2903 -0.7060 9 6 5.7891 2.4361 -1.6609 10 6 5.5109 0.9642 -1.3499 11 7 4.0572 0.7761 -1.2159 12 6 3.3507 1.2692 -2.4057 13 6 3.6907 0.3992 -3.5883 14 6 2.9173 -0.7113 -3.8730 15 6 3.2258 -1.5103 -4.9563 16 6 4.3147 -1.1979 -5.7600 17 7 4.6299 -2.0042 -6.8561 18 6 3.8080 -3.1775 -7.1627 19 6 5.7792 -1.6734 -7.7024 20 6 7.0109 -2.3560 -7.1661 21 1 6.9445 -2.9741 -6.2830 22 6 8.2227 -2.1916 -7.8029 23 7 8.3037 -1.4385 -8.8781 24 14 9.7498 -3.0372 -7.1378 25 1 9.3942 -3.8206 -5.9274 26 1 10.3012 -3.9487 -8.1724 27 1 10.7677 -2.0151 -6.7851 28 6 5.0931 -0.0850 -5.4678 29 6 4.7758 0.7128 -4.3860 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8900 35 1 1.6768 1.9562 0.8900 36 1 1.6766 1.9563 -0.8899 37 1 5.3769 4.2117 -0.6105 38 1 6.8610 2.6232 -1.5954 39 1 5.4451 2.6639 -2.6698 40 1 6.0027 0.6884 -0.4171 41 1 5.8866 0.3417 -2.1619 42 1 3.6555 2.2955 -2.6101 43 1 2.2756 1.2378 -2.2289 44 1 2.0704 -0.9534 -3.2478 45 1 2.6210 -2.3772 -5.1782 46 1 4.2096 -4.0480 -6.6439 47 1 2.7839 -2.9994 -6.8348 48 1 3.8192 -3.3580 -8.2376 49 1 5.5899 -2.0128 -8.7209 50 1 5.9323 -0.5942 -7.7016 51 1 9.1561 -1.3231 -9.3263 52 1 5.9431 0.1582 -6.0881 53 1 5.3781 1.5805 -4.1607 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093771697.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:57 Heat of formation + Delta-G solvation = -11.788990 kcal Electronic energy + Delta-G solvation = -31304.981980 eV Core-core repulsion = 27368.768564 eV Total energy + Delta-G solvation = -3936.213416 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.09503 -40.33713 -38.69116 -37.04604 -36.67116 -34.80726 -34.22663 -31.91439 -31.84042 -30.92833 -29.58275 -28.62118 -27.48018 -26.23265 -24.83743 -24.19312 -23.22210 -22.95875 -21.83386 -21.18605 -19.61938 -18.62099 -18.42853 -18.06987 -17.85909 -17.02658 -16.72818 -16.59557 -16.14186 -15.98978 -15.64314 -15.36713 -15.25616 -15.05105 -14.73786 -14.47084 -14.22201 -14.14930 -14.04190 -13.90973 -13.67717 -13.22889 -13.13975 -13.04747 -12.97658 -12.82331 -12.64228 -12.56919 -12.50351 -12.27043 -12.18675 -11.95522 -11.88709 -11.72302 -11.66339 -11.49139 -11.29671 -11.19899 -10.62367 -10.35532 -10.16302 -9.59829 -9.23835 -8.33559 -7.76178 -6.34801 0.76729 0.88213 1.37651 1.39828 1.48540 1.51749 2.14383 2.36350 2.67222 2.83809 3.08566 3.31594 3.43879 3.75277 3.88772 3.95556 4.06569 4.10968 4.20160 4.30017 4.32988 4.36641 4.47272 4.49616 4.56015 4.58481 4.68595 4.75867 4.77345 4.86767 4.87715 4.93053 4.94398 5.01166 5.04774 5.07905 5.11086 5.16709 5.22093 5.34596 5.38206 5.46892 5.59919 5.64320 5.65041 5.73460 5.74599 5.87215 5.97498 6.04101 6.10325 6.20561 6.26740 6.53808 6.86227 6.98415 7.09080 7.37306 8.85443 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.012900 B = 0.002873 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.958247 B = 9743.343703 C =11108.200278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.102 4.102 4 C 0.076 3.924 5 H 0.125 0.875 6 C 0.488 3.512 7 O -0.592 6.592 8 N -0.713 5.713 9 C 0.068 3.932 10 C 0.032 3.968 11 N -0.508 5.508 12 C 0.096 3.904 13 C -0.149 4.149 14 C -0.046 4.046 15 C -0.217 4.217 16 C 0.213 3.787 17 N -0.632 5.632 18 C 0.100 3.900 19 C 0.267 3.733 20 C -0.537 4.537 21 H 0.049 0.951 22 C 0.013 3.987 23 N -0.927 5.927 24 Si 0.960 3.040 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.276 1.276 28 C -0.213 4.213 29 C -0.065 4.065 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.402 0.598 38 H 0.104 0.896 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.041 0.959 43 H 0.098 0.902 44 H 0.140 0.860 45 H 0.130 0.870 46 H 0.038 0.962 47 H 0.084 0.916 48 H 0.059 0.941 49 H 0.007 0.993 50 H 0.012 0.988 51 H 0.266 0.734 52 H 0.095 0.905 53 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.206 4.457 16.365 20.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.140 4.140 4 C -0.035 4.035 5 H 0.142 0.858 6 C 0.274 3.726 7 O -0.473 6.473 8 N -0.364 5.364 9 C -0.057 4.057 10 C -0.096 4.096 11 N -0.231 5.231 12 C -0.030 4.030 13 C -0.152 4.152 14 C -0.065 4.065 15 C -0.240 4.240 16 C 0.108 3.892 17 N -0.340 5.340 18 C -0.043 4.043 19 C 0.145 3.855 20 C -0.576 4.576 21 H 0.067 0.933 22 C -0.186 4.186 23 N -0.567 5.567 24 Si 0.785 3.215 25 H -0.194 1.194 26 H -0.203 1.203 27 H -0.202 1.202 28 C -0.236 4.236 29 C -0.084 4.084 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.238 0.762 38 H 0.122 0.878 39 H 0.092 0.908 40 H 0.112 0.888 41 H 0.115 0.885 42 H 0.059 0.941 43 H 0.116 0.884 44 H 0.157 0.843 45 H 0.147 0.853 46 H 0.057 0.943 47 H 0.102 0.898 48 H 0.078 0.922 49 H 0.025 0.975 50 H 0.030 0.970 51 H 0.075 0.925 52 H 0.113 0.887 53 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.485 4.034 16.437 20.453 hybrid contribution 1.767 0.932 -0.512 2.062 sum -9.718 4.967 15.925 19.306 Atomic orbital electron populations 1.21780 0.95499 1.02001 1.01695 1.21415 0.95646 0.94693 1.03182 1.21627 0.90608 0.99020 1.02794 1.22022 0.97979 0.87495 0.96049 0.85794 1.21671 0.79374 0.92556 0.79026 1.90712 1.57901 1.57189 1.41464 1.45658 1.33840 1.15925 1.41023 1.22298 0.98931 0.91911 0.92541 1.22628 0.88656 0.93790 1.04507 1.62689 1.03971 1.55225 1.01240 1.21115 0.99963 0.94875 0.87043 1.19282 0.98376 0.99143 0.98377 1.20831 0.98467 0.92567 0.94624 1.20783 0.99744 1.04292 0.99158 1.18236 0.93377 0.90127 0.87433 1.46951 1.30760 1.27654 1.28636 1.21579 0.94898 0.87229 1.00634 1.18785 0.82944 0.95046 0.88720 1.21793 0.94118 1.29853 1.11838 0.93284 1.25752 1.01928 0.95864 0.95051 1.70047 1.26749 1.39749 1.20177 0.85480 0.79141 0.78471 0.78426 1.19419 1.20333 1.20168 1.20744 1.02491 0.98304 1.02057 1.20834 0.96275 0.98020 0.93264 0.92097 0.92911 0.92820 0.90779 0.91671 0.91100 0.91610 0.76176 0.87781 0.90798 0.88778 0.88487 0.94132 0.88413 0.84273 0.85270 0.94312 0.89758 0.92230 0.97483 0.96975 0.92465 0.88655 0.85718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 71.98 0.71 -1.30 16 2 C -0.11 -1.64 5.56 30.59 0.17 -1.46 16 3 C -0.10 -1.75 3.92 30.60 0.12 -1.63 16 4 C 0.08 1.37 2.45 44.03 0.11 1.48 16 5 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 6 C 0.49 10.65 6.86 87.68 0.60 11.25 16 7 O -0.59 -17.34 17.03 -3.03 -0.05 -17.39 16 8 N -0.71 -12.46 5.36 -466.10 -2.50 -14.96 16 9 C 0.07 1.03 6.30 86.47 0.54 1.57 16 10 C 0.03 0.55 5.48 86.24 0.47 1.03 16 11 N -0.51 -9.19 4.26 -880.00 -3.75 -12.94 16 12 C 0.10 1.90 3.77 85.56 0.32 2.22 16 13 C -0.15 -3.70 4.93 -19.84 -0.10 -3.80 16 14 C -0.05 -1.16 9.69 22.25 0.22 -0.95 16 15 C -0.22 -6.61 9.20 22.40 0.21 -6.40 16 16 C 0.21 8.12 6.55 38.21 0.25 8.37 16 17 N -0.63 -26.55 2.99 -726.55 -2.17 -28.72 16 18 C 0.10 3.34 10.24 127.77 1.31 4.65 16 19 C 0.27 13.58 4.95 85.63 0.42 14.00 16 20 C -0.54 -29.37 9.39 25.60 0.24 -29.13 16 21 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 22 C 0.01 0.72 5.46 84.65 0.46 1.18 16 23 N -0.93 -53.24 13.29 21.45 0.28 -52.95 16 24 Si 0.96 42.94 29.54 68.60 2.03 44.97 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 27 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 28 C -0.21 -8.13 9.21 22.40 0.21 -7.92 16 29 C -0.06 -1.89 8.05 22.25 0.18 -1.71 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 1.18 7.04 -2.38 -0.02 1.17 16 34 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.07 1.34 7.76 -2.39 -0.02 1.33 16 36 H 0.07 1.17 6.01 -2.39 -0.01 1.15 16 37 H 0.40 6.38 8.84 -92.71 -0.82 5.56 16 38 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.07 1.19 4.68 -2.39 -0.01 1.18 16 40 H 0.09 1.42 8.08 -2.39 -0.02 1.40 16 41 H 0.10 1.99 6.56 -2.39 -0.02 1.97 16 42 H 0.04 0.82 5.58 -2.39 -0.01 0.81 16 43 H 0.10 1.78 5.00 -2.39 -0.01 1.77 16 44 H 0.14 2.74 8.06 -2.91 -0.02 2.71 16 45 H 0.13 3.45 6.14 -2.91 -0.02 3.44 16 46 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.08 2.26 6.19 -2.39 -0.01 2.24 16 48 H 0.06 1.96 7.89 -2.38 -0.02 1.94 16 49 H 0.01 0.39 7.89 -2.38 -0.02 0.37 16 50 H 0.01 0.67 6.21 -2.39 -0.01 0.66 16 51 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 52 H 0.10 4.27 6.15 -2.91 -0.02 4.25 16 53 H 0.13 3.08 5.93 -2.91 -0.02 3.06 16 Total: -1.00 -66.02 402.84 0.39 -65.63 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.11 Total: 24.91 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: 6.45 Total: -8.55 kcal Atomic # 7 Polarization: -101.43 SS G_CDS: -8.13 Total: -109.57 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.05 Total: -17.39 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -66.02 0.39 -65.63 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093771697.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.839 kcal (2) G-P(sol) polarization free energy of solvation -66.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds