Wall clock time and date at job start Wed Apr 1 2020 04:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47021 * 2 1 4 4 N 1.46506 * 109.46813 * 119.99708 * 2 1 3 5 5 C 1.46760 * 124.34719 * 120.00293 * 4 2 1 6 6 C 1.54488 * 105.46960 * 197.01756 * 5 4 2 7 7 C 1.54623 * 101.76557 * 334.58358 * 6 5 4 8 8 H 1.09000 * 110.48977 * 265.98780 * 7 6 5 9 9 N 1.46901 * 110.48549 * 143.47436 * 7 6 5 10 10 C 1.46898 * 111.00093 * 156.84025 * 9 7 6 11 11 C 1.50704 * 109.47211 * 180.02562 * 10 9 7 12 12 C 1.38285 * 119.92630 * 89.99911 * 11 10 9 13 13 C 1.38098 * 120.07840 * 180.02562 * 12 11 10 14 14 C 1.38911 * 119.92364 * 0.02562 * 13 12 11 15 15 N 1.39677 * 120.07774 * 179.97438 * 14 13 12 16 16 C 1.46499 * 119.99474 * 0.02562 * 15 14 13 17 17 C 1.46500 * 119.99800 * 179.97438 * 15 14 13 18 18 C 1.50706 * 109.46956 * 269.99761 * 17 15 14 19 19 H 1.07999 * 120.00193 * 0.02562 * 18 17 15 20 20 C 1.37879 * 119.99398 * 180.02562 * 18 17 15 21 21 N 1.31514 * 120.00338 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99424 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46845 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47399 * 299.99813 * 22 20 18 25 25 H 1.48498 * 109.47295 * 60.00420 * 22 20 18 26 26 C 1.38919 * 119.85130 * 0.24990 * 14 13 12 27 27 C 1.38109 * 119.91828 * 359.49576 * 26 14 13 28 28 C 1.34652 * 124.31083 * 299.87597 * 4 2 1 29 29 O 1.21282 * 125.07756 * 359.64548 * 28 4 2 30 30 H 1.09001 * 109.47000 * 60.00735 * 1 2 3 31 31 H 1.09007 * 109.47282 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47824 * 300.00231 * 1 2 3 33 33 H 1.08996 * 109.47824 * 239.99769 * 2 1 3 34 34 H 1.09006 * 109.47016 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.46884 * 299.99097 * 3 2 1 36 36 H 1.08994 * 109.47195 * 59.99784 * 3 2 1 37 37 H 1.08999 * 110.24707 * 78.02112 * 5 4 2 38 38 H 1.08996 * 110.32066 * 316.05428 * 5 4 2 39 39 H 1.08999 * 110.96862 * 216.46128 * 6 5 4 40 40 H 1.09003 * 110.96400 * 92.70643 * 6 5 4 41 41 H 1.00897 * 111.00124 * 280.80150 * 9 7 6 42 42 H 1.09000 * 109.47199 * 60.00149 * 10 9 7 43 43 H 1.09004 * 109.47053 * 300.00059 * 10 9 7 44 44 H 1.08004 * 119.96046 * 0.02562 * 12 11 10 45 45 H 1.07994 * 120.04105 * 179.97438 * 13 12 11 46 46 H 1.09000 * 109.46553 * 269.99168 * 16 15 14 47 47 H 1.08991 * 109.47319 * 29.99665 * 16 15 14 48 48 H 1.09005 * 109.46744 * 149.99667 * 16 15 14 49 49 H 1.09000 * 109.46835 * 150.00397 * 17 15 14 50 50 H 1.08992 * 109.47101 * 30.00476 * 17 15 14 51 51 H 0.97000 * 119.99706 * 359.97438 * 21 20 18 52 52 H 1.07993 * 120.03959 * 179.72906 * 26 14 13 53 53 H 1.08004 * 119.95758 * 180.25135 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 2.8655 -1.8887 1.1729 6 6 2.7606 -2.4953 2.5898 7 6 2.4036 -1.2533 3.4388 8 1 3.3047 -0.8058 3.8581 9 7 1.4647 -1.6148 4.5092 10 6 1.5332 -0.6525 5.6169 11 6 0.5589 -1.0556 6.6937 12 6 0.9644 -1.9023 7.7091 13 6 0.0740 -2.2742 8.6971 14 6 -1.2303 -1.7971 8.6698 15 7 -2.1337 -2.1716 9.6672 16 6 -1.7057 -3.0680 10.7439 17 6 -3.5087 -1.6670 9.6370 18 6 -3.5857 -0.3726 10.4050 19 1 -2.6991 0.0337 10.8688 20 6 -4.7883 0.2928 10.5155 21 7 -5.8681 -0.2023 9.9512 22 14 -4.8836 1.8975 11.4669 23 1 -6.2777 2.4083 11.4374 24 1 -4.4723 1.6638 12.8745 25 1 -3.9769 2.8960 10.8455 26 6 -1.6360 -0.9513 7.6452 27 6 -0.7389 -0.5792 6.6632 28 6 1.7489 -0.3055 2.4581 29 8 1.0785 0.6576 2.7648 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 3.8981 -1.6163 0.9547 38 1 2.4981 -2.5977 0.4310 39 1 3.7137 -2.9212 2.9033 40 1 1.9673 -3.2413 2.6370 41 1 0.5233 -1.6910 4.1540 42 1 1.2792 0.3421 5.2504 43 1 2.5432 -0.6416 6.0268 44 1 1.9785 -2.2732 7.7295 45 1 0.3912 -2.9357 9.4896 46 1 -1.8843 -4.1019 10.4484 47 1 -0.6426 -2.9235 10.9360 48 1 -2.2719 -2.8456 11.6484 49 1 -4.1747 -2.3999 10.0925 50 1 -3.8100 -1.4950 8.6038 51 1 -5.8184 -1.0354 9.4569 52 1 -2.6505 -0.5821 7.6186 53 1 -1.0524 0.0816 5.8686 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000114774802.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:34 Heat of formation + Delta-G solvation = -22.299811 kcal Electronic energy + Delta-G solvation = -30079.816565 eV Core-core repulsion = 26143.147365 eV Total energy + Delta-G solvation = -3936.669199 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.68661 -40.52364 -38.00489 -37.49877 -36.80326 -35.19687 -34.51916 -31.94661 -31.54592 -29.89941 -29.34662 -28.18653 -27.96433 -26.59061 -25.39091 -23.84404 -23.27775 -23.05972 -22.51280 -21.20550 -19.97110 -19.13189 -18.37914 -17.91826 -17.33185 -16.85533 -16.53396 -16.17821 -15.97105 -15.75735 -15.58208 -15.44437 -15.16897 -14.87146 -14.67616 -14.63259 -14.42074 -14.27403 -14.14093 -13.92893 -13.72054 -13.36999 -13.32915 -13.23601 -13.07946 -13.06494 -12.76955 -12.69683 -12.67127 -12.50962 -12.28587 -12.19764 -11.99725 -11.97132 -11.79758 -11.54841 -11.32443 -11.02809 -10.64490 -10.40214 -9.75296 -9.68871 -9.33963 -8.80443 -7.94990 -6.47790 0.62040 0.74296 1.46995 1.51675 1.54612 1.74673 2.03002 2.42533 2.53575 2.90521 3.06459 3.24707 3.49272 3.70520 3.93030 3.95583 4.05168 4.05886 4.12795 4.16725 4.17359 4.27182 4.33465 4.45502 4.52669 4.54963 4.62855 4.64578 4.65724 4.70013 4.72619 4.77718 4.78615 4.83849 4.84337 4.85346 4.98798 5.01273 5.14970 5.18862 5.19709 5.23099 5.25044 5.51909 5.56646 5.71744 5.80824 5.84054 5.92024 5.96622 6.12742 6.14825 6.21132 6.40219 6.59687 6.81427 7.17428 7.31615 8.63077 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.013758 B = 0.002199 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.728005 B =12731.102505 C =13992.973811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.147 3.853 3 C -0.163 4.163 4 N -0.615 5.615 5 C 0.099 3.901 6 C -0.109 4.109 7 C 0.052 3.948 8 H 0.122 0.878 9 N -0.651 5.651 10 C 0.117 3.883 11 C -0.156 4.156 12 C -0.041 4.041 13 C -0.213 4.213 14 C 0.212 3.788 15 N -0.629 5.629 16 C 0.098 3.902 17 C 0.254 3.746 18 C -0.615 4.615 19 H 0.041 0.959 20 C -0.029 4.029 21 N -0.931 5.931 22 Si 1.115 2.885 23 H -0.279 1.279 24 H -0.267 1.267 25 H -0.277 1.277 26 C -0.217 4.217 27 C -0.070 4.070 28 C 0.475 3.525 29 O -0.571 6.571 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.033 0.967 33 H 0.121 0.879 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.035 0.965 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.119 0.881 40 H 0.084 0.916 41 H 0.336 0.664 42 H 0.026 0.974 43 H 0.096 0.904 44 H 0.152 0.848 45 H 0.139 0.861 46 H 0.055 0.945 47 H 0.082 0.918 48 H 0.054 0.946 49 H 0.005 0.995 50 H 0.002 0.998 51 H 0.256 0.744 52 H 0.087 0.913 53 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.275 -6.703 -20.526 32.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.045 3.955 3 C -0.221 4.221 4 N -0.349 5.349 5 C -0.023 4.023 6 C -0.147 4.147 7 C -0.061 4.061 8 H 0.140 0.860 9 N -0.280 5.280 10 C -0.012 4.012 11 C -0.159 4.159 12 C -0.060 4.060 13 C -0.235 4.235 14 C 0.107 3.893 15 N -0.337 5.337 16 C -0.044 4.044 17 C 0.131 3.869 18 C -0.654 4.654 19 H 0.060 0.940 20 C -0.228 4.228 21 N -0.568 5.568 22 Si 0.936 3.064 23 H -0.204 1.204 24 H -0.192 1.192 25 H -0.203 1.203 26 C -0.240 4.240 27 C -0.089 4.089 28 C 0.262 3.738 29 O -0.450 6.450 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.139 0.861 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.054 0.946 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.137 0.863 40 H 0.103 0.897 41 H 0.153 0.847 42 H 0.044 0.956 43 H 0.115 0.885 44 H 0.169 0.831 45 H 0.156 0.844 46 H 0.073 0.927 47 H 0.101 0.899 48 H 0.073 0.927 49 H 0.023 0.977 50 H 0.020 0.980 51 H 0.065 0.935 52 H 0.105 0.895 53 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 23.170 -5.517 -19.501 30.782 hybrid contribution -0.556 -0.075 -0.717 0.910 sum 22.614 -5.592 -20.217 30.845 Atomic orbital electron populations 1.22146 0.95739 1.02127 1.02291 1.21112 0.93724 0.93278 0.87396 1.22127 1.01489 0.96110 1.02345 1.48734 1.50635 1.30025 1.05498 1.22428 0.95534 0.85536 0.98822 1.22665 1.05063 0.95400 0.91555 1.22614 0.97230 0.95703 0.90575 0.85987 1.60958 1.11021 1.47965 1.08028 1.20716 0.98459 0.92745 0.89247 1.19477 0.94010 1.03141 0.99234 1.20926 0.99430 0.94072 0.91599 1.20852 0.91510 1.07663 1.03500 1.18222 0.90341 0.92685 0.88005 1.46763 1.10367 1.50668 1.25877 1.21624 1.00946 0.92491 0.89359 1.18879 0.79512 0.93319 0.95160 1.22609 0.97140 1.09052 1.36575 0.94022 1.27278 0.91662 1.06335 0.97504 1.70937 1.30788 1.21430 1.33673 0.82957 0.76368 0.71448 0.75620 1.20410 1.19209 1.20300 1.20654 0.99982 1.04973 0.98361 1.20760 0.93550 0.98013 0.96615 1.22527 0.80235 0.85239 0.85840 1.90704 1.41656 1.30457 1.82233 0.89892 0.92301 0.94777 0.86131 0.91759 0.89959 0.94613 0.88801 0.88308 0.86282 0.89745 0.84661 0.95593 0.88548 0.83077 0.84365 0.92667 0.89929 0.92704 0.97671 0.97994 0.93471 0.89453 0.87531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.20 71.98 0.66 -2.15 16 2 C 0.15 2.00 3.48 44.99 0.16 2.15 16 3 C -0.16 -2.49 9.20 71.98 0.66 -1.83 16 4 N -0.61 -9.19 2.84 -793.67 -2.25 -11.44 16 5 C 0.10 0.66 7.30 86.84 0.63 1.29 16 6 C -0.11 -0.93 6.89 31.65 0.22 -0.71 16 7 C 0.05 0.86 3.24 44.91 0.15 1.00 16 8 H 0.12 1.74 7.85 -2.39 -0.02 1.72 16 9 N -0.65 -14.12 6.29 -495.60 -3.12 -17.24 16 10 C 0.12 2.94 5.61 85.56 0.48 3.42 16 11 C -0.16 -4.86 5.40 -19.84 -0.11 -4.97 16 12 C -0.04 -1.20 9.69 22.25 0.22 -0.98 16 13 C -0.21 -7.16 9.21 22.40 0.21 -6.95 16 14 C 0.21 9.05 6.55 38.22 0.25 9.30 16 15 N -0.63 -28.57 2.99 -726.56 -2.17 -30.74 16 16 C 0.10 3.50 10.19 127.77 1.30 4.81 16 17 C 0.25 13.74 4.23 85.63 0.36 14.11 16 18 C -0.62 -36.08 9.39 25.60 0.24 -35.84 16 19 H 0.04 2.49 7.81 -2.91 -0.02 2.47 16 20 C -0.03 -1.73 5.46 84.66 0.46 -1.26 16 21 N -0.93 -58.06 13.65 21.45 0.29 -57.76 16 22 Si 1.11 52.06 29.90 68.60 2.05 54.11 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 26 C -0.22 -9.79 9.21 22.40 0.21 -9.58 16 27 C -0.07 -2.68 9.69 22.25 0.22 -2.46 16 28 C 0.48 10.48 6.77 87.86 0.59 11.08 16 29 O -0.57 -18.26 14.24 -3.04 -0.04 -18.30 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.03 0.85 6.81 -2.39 -0.02 0.83 16 33 H 0.12 0.84 8.07 -2.39 -0.02 0.82 16 34 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.03 0.82 6.77 -2.39 -0.02 0.81 16 37 H 0.09 0.27 8.14 -2.39 -0.02 0.26 16 38 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.08 0.87 8.09 -2.39 -0.02 0.85 16 41 H 0.34 8.58 8.46 -89.70 -0.76 7.82 16 42 H 0.03 0.78 7.24 -2.39 -0.02 0.76 16 43 H 0.10 1.99 8.02 -2.38 -0.02 1.97 16 44 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 45 H 0.14 3.93 6.14 -2.91 -0.02 3.91 16 46 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.08 2.47 6.20 -2.39 -0.01 2.45 16 48 H 0.05 2.04 8.07 -2.38 -0.02 2.02 16 49 H 0.01 0.30 7.94 -2.39 -0.02 0.28 16 50 H 0.00 0.13 6.05 -2.39 -0.01 0.11 16 51 H 0.26 16.07 7.22 -92.71 -0.67 15.40 16 52 H 0.09 4.55 6.14 -2.91 -0.02 4.53 16 53 H 0.11 4.02 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -77.06 420.04 1.90 -75.16 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: 0.24 Total: 25.79 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: 6.91 Total: -19.57 kcal Atomic # 7 Polarization: -109.94 SS G_CDS: -7.25 Total: -117.18 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.04 Total: -18.30 kcal Atomic # 14 Polarization: 52.06 SS G_CDS: 2.05 Total: 54.11 kcal Total: -77.06 1.90 -75.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114774802.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.857 kcal (2) G-P(sol) polarization free energy of solvation -77.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds