Wall clock time and date at job start Wed Apr 1 2020 03:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47298 * 2 1 4 4 C 1.52998 * 109.46920 * 174.78534 * 3 2 1 5 5 H 1.09002 * 109.48848 * 305.34220 * 4 3 2 6 6 C 1.53051 * 109.48730 * 65.40922 * 4 3 2 7 7 N 1.46961 * 109.36250 * 178.36637 * 6 4 3 8 8 C 1.46900 * 111.00108 * 176.81027 * 7 6 4 9 9 C 1.50697 * 109.47069 * 189.84797 * 8 7 6 10 10 O 1.21294 * 120.00267 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99923 * 180.02562 * 9 8 7 12 12 C 1.37102 * 120.00153 * 179.97438 * 11 9 8 13 13 H 1.08001 * 119.99874 * 359.97438 * 12 11 9 14 14 C 1.38949 * 119.99666 * 179.72078 * 12 11 9 15 15 N 1.31415 * 119.99378 * 180.27508 * 14 12 11 16 16 Si 1.86800 * 120.00417 * 0.27811 * 14 12 11 17 17 H 1.48500 * 109.47219 * 89.99728 * 16 14 12 18 18 H 1.48495 * 109.46842 * 209.99788 * 16 14 12 19 19 H 1.48497 * 109.46725 * 329.99695 * 16 14 12 20 20 C 1.46952 * 110.87946 * 300.68037 * 7 6 4 21 21 C 1.53051 * 109.36675 * 59.32215 * 20 7 6 22 22 N 1.46952 * 109.48613 * 185.30025 * 4 3 2 23 23 C 1.46892 * 111.00303 * 56.84523 * 22 4 3 24 24 C 1.50702 * 109.47273 * 58.99556 * 23 22 4 25 25 C 1.38230 * 120.00025 * 264.89795 * 24 23 22 26 26 C 1.38238 * 119.99696 * 179.78303 * 25 24 23 27 27 C 1.38238 * 120.00244 * 0.44797 * 26 25 24 28 28 C 1.38240 * 119.99668 * 359.80849 * 27 26 25 29 29 C 1.38233 * 119.99547 * 85.17212 * 24 23 22 30 30 H 1.09005 * 109.47005 * 300.00028 * 1 2 3 31 31 H 1.09000 * 109.47288 * 60.00021 * 1 2 3 32 32 H 1.08995 * 109.47414 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46653 * 239.99971 * 2 1 3 34 34 H 1.08998 * 109.46506 * 120.00468 * 2 1 3 35 35 H 1.08995 * 109.46973 * 54.78292 * 3 2 1 36 36 H 1.09001 * 109.46704 * 294.78396 * 3 2 1 37 37 H 1.08995 * 109.48936 * 58.40189 * 6 4 3 38 38 H 1.08999 * 109.48834 * 298.33044 * 6 4 3 39 39 H 1.08997 * 109.47187 * 69.84433 * 8 7 6 40 40 H 1.08997 * 109.47162 * 309.84464 * 8 7 6 41 41 H 0.97005 * 119.99859 * 359.97438 * 11 9 8 42 42 H 0.97003 * 119.99410 * 180.02562 * 15 14 12 43 43 H 1.09008 * 109.48837 * 179.28867 * 20 7 6 44 44 H 1.08996 * 109.49238 * 299.35098 * 20 7 6 45 45 H 1.08995 * 109.48936 * 61.56229 * 21 20 7 46 46 H 1.08999 * 109.48834 * 181.63373 * 21 20 7 47 47 H 1.08997 * 109.47296 * 178.99781 * 23 22 4 48 48 H 1.09004 * 109.46984 * 298.99680 * 23 22 4 49 49 H 1.07995 * 120.00240 * 359.97438 * 25 24 23 50 50 H 1.07999 * 120.00039 * 180.26994 * 26 25 24 51 51 H 1.07998 * 119.99934 * 179.83029 * 27 26 25 52 52 H 1.08001 * 119.99680 * 180.02562 * 28 27 26 53 53 H 1.08001 * 120.00648 * 359.97438 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5644 1.4444 0.1311 5 1 3.8541 0.8761 1.0150 6 6 4.1847 0.8051 -1.1135 7 7 5.6496 0.8437 -1.0024 8 6 6.2821 0.1706 -2.1447 9 6 7.7580 0.0158 -1.8822 10 8 8.2359 0.4254 -0.8454 11 7 8.5470 -0.5778 -2.7997 12 6 9.8898 -0.7182 -2.5612 13 1 10.3154 -0.3527 -1.6383 14 6 10.7021 -1.3354 -3.5045 15 7 11.9882 -1.4747 -3.2735 16 14 9.9660 -1.9669 -5.1010 17 1 10.0136 -0.8939 -6.1266 18 1 10.7441 -3.1395 -5.5750 19 1 8.5553 -2.3691 -4.8706 20 6 6.1289 2.2270 -0.8747 21 6 5.5086 2.8662 0.3699 22 7 4.0437 2.8276 0.2588 23 6 3.4113 3.5007 1.4010 24 6 3.7213 2.7420 2.6657 25 6 2.8257 1.8055 3.1470 26 6 3.1121 1.1064 4.3047 27 6 4.2899 1.3504 4.9860 28 6 5.1831 2.2908 4.5075 29 6 4.8986 2.9868 3.3475 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6025 1.9825 0.8395 36 1 1.7550 1.9286 -0.9330 37 1 3.8726 1.3573 -1.9999 38 1 3.8533 -0.2301 -1.1941 39 1 6.1338 0.7665 -3.0452 40 1 5.8324 -0.8128 -2.2816 41 1 8.1647 -0.9057 -3.6287 42 1 12.5554 -1.9053 -3.9322 43 1 7.2150 2.2284 -0.7813 44 1 5.8390 2.7954 -1.7584 45 1 5.8207 2.3140 1.2562 46 1 5.8401 3.9015 0.4505 47 1 3.7970 4.5168 1.4831 48 1 2.3320 3.5327 1.2518 49 1 1.9036 1.6178 2.6170 50 1 2.4144 0.3716 4.6784 51 1 4.5124 0.8062 5.8919 52 1 6.1034 2.4812 5.0396 53 1 5.5965 3.7213 2.9736 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180277156.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:05 Heat of formation + Delta-G solvation = -17.252402 kcal Electronic energy + Delta-G solvation = -31425.335571 eV Core-core repulsion = 27488.885243 eV Total energy + Delta-G solvation = -3936.450327 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.43527 -40.37760 -39.26736 -36.83274 -35.84788 -35.77319 -33.76071 -32.48417 -32.03284 -31.55871 -29.98761 -28.06126 -27.06902 -25.92797 -24.62953 -23.63694 -23.22883 -22.21171 -21.81996 -21.23631 -20.39987 -20.14774 -17.90708 -17.61456 -17.08786 -16.80849 -16.65749 -16.32229 -16.17743 -16.09902 -15.83488 -15.58135 -15.18818 -15.10332 -14.96753 -14.72289 -14.33935 -14.31541 -14.06299 -13.91287 -13.61369 -13.45990 -13.33879 -13.10507 -12.96793 -12.83873 -12.59459 -12.42584 -12.38016 -12.16916 -12.02680 -11.98500 -11.96174 -11.80576 -11.62292 -11.52698 -11.36859 -11.12084 -10.34690 -10.22855 -9.79073 -9.67659 -9.34791 -9.16558 -8.41363 -6.01865 0.42576 0.50193 1.29808 1.35016 1.43979 1.95834 2.22788 2.60472 2.78107 3.03391 3.14888 3.21178 3.77863 3.87860 3.92776 3.96996 4.11158 4.13921 4.16597 4.25009 4.29366 4.29760 4.32041 4.38334 4.39918 4.48278 4.53545 4.57768 4.61854 4.67582 4.77934 4.79320 4.84935 4.88849 4.98810 5.01890 5.03532 5.13859 5.15007 5.15981 5.20892 5.35718 5.47016 5.52748 5.53493 5.58080 5.62811 5.64592 5.86596 5.98079 6.01230 6.12352 6.18124 6.25149 6.60317 6.88746 7.40107 7.97699 8.76463 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.012609 B = 0.002806 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.178406 B = 9974.690870 C =11143.821419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.104 4.104 4 C 0.091 3.909 5 H 0.035 0.965 6 C 0.063 3.937 7 N -0.538 5.538 8 C 0.055 3.945 9 C 0.452 3.548 10 O -0.604 6.604 11 N -0.592 5.592 12 C -0.326 4.326 13 H 0.054 0.946 14 C -0.015 4.015 15 N -0.936 5.936 16 Si 0.964 3.036 17 H -0.257 1.257 18 H -0.275 1.275 19 H -0.231 1.231 20 C 0.059 3.941 21 C 0.065 3.935 22 N -0.520 5.520 23 C 0.090 3.910 24 C -0.126 4.126 25 C -0.113 4.113 26 C -0.130 4.130 27 C -0.131 4.131 28 C -0.138 4.138 29 C -0.123 4.123 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.048 0.952 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.118 0.882 41 H 0.389 0.611 42 H 0.279 0.721 43 H 0.063 0.937 44 H 0.038 0.962 45 H 0.029 0.971 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.105 0.895 49 H 0.139 0.861 50 H 0.140 0.860 51 H 0.134 0.866 52 H 0.126 0.874 53 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.221 6.592 6.717 29.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.142 4.142 4 C -0.018 4.018 5 H 0.053 0.947 6 C -0.065 4.065 7 N -0.263 5.263 8 C -0.076 4.076 9 C 0.240 3.760 10 O -0.488 6.488 11 N -0.234 5.234 12 C -0.455 4.455 13 H 0.073 0.927 14 C -0.214 4.214 15 N -0.577 5.577 16 Si 0.784 3.216 17 H -0.182 1.182 18 H -0.200 1.200 19 H -0.155 1.155 20 C -0.069 4.069 21 C -0.063 4.063 22 N -0.243 5.243 23 C -0.037 4.037 24 C -0.127 4.127 25 C -0.131 4.131 26 C -0.147 4.147 27 C -0.150 4.150 28 C -0.156 4.156 29 C -0.142 4.142 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.066 0.934 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.136 0.864 41 H 0.224 0.776 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.057 0.943 45 H 0.048 0.952 46 H 0.103 0.897 47 H 0.106 0.894 48 H 0.123 0.877 49 H 0.156 0.844 50 H 0.158 0.842 51 H 0.152 0.848 52 H 0.144 0.856 53 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -27.696 6.819 7.320 29.448 hybrid contribution 1.100 -0.523 -0.558 1.340 sum -26.596 6.296 6.762 28.155 Atomic orbital electron populations 1.21734 0.94692 1.01907 1.02166 1.21536 0.96619 0.96025 1.02006 1.21698 0.91625 0.97641 1.03267 1.21681 0.95681 0.87974 0.96472 0.94686 1.22352 0.85207 1.01324 0.97574 1.61674 1.06565 1.16745 1.41348 1.21796 0.90369 1.02041 0.93363 1.20857 0.89507 0.81468 0.84160 1.90514 1.76796 1.53093 1.28420 1.42038 1.07282 1.55076 1.19027 1.18989 0.83231 1.38091 1.05214 0.92742 1.26105 0.95446 0.96934 1.02884 1.69810 1.05952 1.44073 1.37815 0.85371 0.80023 0.78928 0.77252 1.18154 1.19993 1.15474 1.22159 0.99894 0.87410 0.97422 1.22070 0.87814 1.00075 0.96324 1.62638 1.05287 1.16733 1.39617 1.21383 1.01370 0.96990 0.83933 1.20754 0.95128 0.98955 0.97900 1.21354 0.99705 0.95800 0.96267 1.21451 0.97536 1.00005 0.95748 1.21432 0.94705 0.98058 1.00759 1.21393 1.00027 0.97226 0.96934 1.21248 0.97106 1.00351 0.95511 0.92305 0.92359 0.92572 0.91888 0.92661 0.90376 0.90792 0.93413 0.89246 0.90604 0.86399 0.77568 0.91171 0.91908 0.94348 0.95227 0.89669 0.89401 0.87701 0.84381 0.84212 0.84775 0.85634 0.86429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 71.98 0.71 -0.85 16 2 C -0.12 -1.67 5.57 30.60 0.17 -1.50 16 3 C -0.10 -1.54 4.10 30.59 0.13 -1.41 16 4 C 0.09 1.94 1.43 44.92 0.06 2.01 16 5 H 0.04 0.94 6.50 -2.39 -0.02 0.92 16 6 C 0.06 1.50 4.61 86.31 0.40 1.90 16 7 N -0.54 -17.44 4.45 -900.29 -4.00 -21.44 16 8 C 0.06 1.81 5.45 85.56 0.47 2.28 16 9 C 0.45 21.03 7.48 87.66 0.66 21.68 16 10 O -0.60 -34.13 13.90 -3.07 -0.04 -34.17 16 11 N -0.59 -28.52 5.09 -306.98 -1.56 -30.08 16 12 C -0.33 -19.39 10.16 84.04 0.85 -18.54 16 13 H 0.05 3.86 7.39 -2.91 -0.02 3.83 16 14 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 15 N -0.94 -57.10 13.96 21.66 0.30 -56.80 16 16 Si 0.96 39.27 27.74 68.60 1.90 41.18 16 17 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 18 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 19 H -0.23 -7.95 6.51 99.48 0.65 -7.30 16 20 C 0.06 1.98 5.26 86.31 0.45 2.43 16 21 C 0.07 1.83 4.78 86.31 0.41 2.25 16 22 N -0.52 -11.51 4.73 -875.05 -4.14 -15.65 16 23 C 0.09 1.62 5.17 85.56 0.44 2.06 16 24 C -0.13 -2.57 3.99 -19.87 -0.08 -2.65 16 25 C -0.11 -2.08 8.11 22.27 0.18 -1.90 16 26 C -0.13 -2.39 10.05 22.27 0.22 -2.17 16 27 C -0.13 -2.66 10.05 22.27 0.22 -2.44 16 28 C -0.14 -3.11 10.05 22.27 0.22 -2.89 16 29 C -0.12 -2.85 7.81 22.27 0.17 -2.67 16 30 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.06 0.88 6.88 -2.39 -0.02 0.87 16 34 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.08 1.00 4.14 -2.39 -0.01 0.99 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.09 1.90 6.71 -2.39 -0.02 1.88 16 39 H 0.08 2.11 8.12 -2.39 -0.02 2.09 16 40 H 0.12 3.19 8.03 -2.39 -0.02 3.17 16 41 H 0.39 15.53 5.76 -92.70 -0.53 15.00 16 42 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 43 H 0.06 2.65 5.84 -2.38 -0.01 2.63 16 44 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.03 0.97 6.08 -2.39 -0.01 0.96 16 46 H 0.09 2.15 8.12 -2.39 -0.02 2.13 16 47 H 0.09 1.47 8.09 -2.39 -0.02 1.45 16 48 H 0.10 1.47 6.10 -2.38 -0.01 1.46 16 49 H 0.14 1.97 6.00 -2.91 -0.02 1.95 16 50 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 51 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 52 H 0.13 2.54 8.06 -2.91 -0.02 2.52 16 53 H 0.12 2.63 7.68 -2.91 -0.02 2.61 16 Total: -1.00 -76.65 401.00 -1.06 -77.71 By element: Atomic # 1 Polarization: 41.76 SS G_CDS: 0.31 Total: 42.07 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: 6.17 Total: -2.81 kcal Atomic # 7 Polarization: -114.57 SS G_CDS: -9.41 Total: -123.98 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -0.04 Total: -34.17 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 1.90 Total: 41.18 kcal Total: -76.65 -1.06 -77.71 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180277156.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.461 kcal (2) G-P(sol) polarization free energy of solvation -76.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds