Wall clock time and date at job start Wed Apr 1 2020 04:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31507 * 120.00279 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99507 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47368 * 90.00025 * 9 7 5 11 11 H 1.48505 * 109.46966 * 209.99896 * 9 7 5 12 12 H 1.48497 * 109.47165 * 329.99743 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21281 * 120.00210 * 0.02562 * 14 13 3 16 16 C 1.50707 * 119.99886 * 180.02562 * 14 13 3 17 17 H 1.09006 * 109.46537 * 299.99572 * 16 14 13 18 18 C 1.50700 * 109.47207 * 60.00023 * 16 14 13 19 19 C 1.38226 * 119.99782 * 79.72878 * 18 16 14 20 20 C 1.38240 * 119.99928 * 179.76736 * 19 18 16 21 21 C 1.38242 * 119.99636 * 0.50396 * 20 19 18 22 22 C 1.38237 * 120.00077 * 359.74728 * 21 20 19 23 23 C 1.38234 * 119.99669 * 259.99860 * 18 16 14 24 24 N 1.46894 * 109.46894 * 180.02562 * 16 14 13 25 25 C 1.46963 * 111.00057 * 183.79680 * 24 16 14 26 26 C 1.53053 * 109.36475 * 176.80650 * 25 24 16 27 27 N 1.46958 * 109.36268 * 58.40751 * 26 25 24 28 28 C 1.46900 * 111.00010 * 176.81125 * 27 26 25 29 29 C 1.46963 * 110.87608 * 300.67585 * 27 26 25 30 30 C 1.46955 * 111.00515 * 59.99824 * 24 16 14 31 31 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 32 32 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 33 33 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 35 35 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 36 36 H 0.96999 * 119.99739 * 179.97438 * 8 7 5 37 37 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 38 38 H 1.08000 * 120.00638 * 359.97438 * 19 18 16 39 39 H 1.07999 * 120.00091 * 180.23174 * 20 19 18 40 40 H 1.07999 * 119.99691 * 179.72893 * 21 20 19 41 41 H 1.07998 * 119.99813 * 179.97438 * 22 21 20 42 42 H 1.08000 * 120.00300 * 0.02562 * 23 18 16 43 43 H 1.08993 * 109.48837 * 296.77976 * 25 24 16 44 44 H 1.09004 * 109.48630 * 56.84316 * 25 24 16 45 45 H 1.09000 * 109.48931 * 298.43594 * 26 25 24 46 46 H 1.09000 * 109.50430 * 178.37727 * 26 25 24 47 47 H 1.08993 * 109.47151 * 183.79258 * 28 27 26 48 48 H 1.08999 * 109.46781 * 303.79478 * 28 27 26 49 49 H 1.08999 * 109.47049 * 63.79240 * 28 27 26 50 50 H 1.09002 * 109.48649 * 299.35125 * 29 27 26 51 51 H 1.09001 * 109.50299 * 179.30434 * 29 27 26 52 52 H 1.09001 * 109.48897 * 303.15594 * 30 24 16 53 53 H 1.08997 * 109.49207 * 63.21782 * 30 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 5.4540 0.8794 1.3358 9 14 3.0963 0.1099 2.5707 10 1 2.8744 -1.3261 2.2646 11 1 3.7942 0.2358 3.8755 12 1 1.7882 0.8093 2.6395 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3392 2.6326 -0.4340 16 6 0.0363 3.3378 -2.6548 17 1 0.7278 4.1531 -2.8677 18 6 0.0792 2.3359 -3.7797 19 6 -0.9655 1.4479 -3.9545 20 6 -0.9285 0.5321 -4.9894 21 6 0.1584 0.4974 -5.8430 22 6 1.2056 1.3821 -5.6650 23 6 1.1660 2.3013 -4.6333 24 7 -1.3258 3.8725 -2.5263 25 6 -1.7834 4.4582 -3.7941 26 6 -3.2311 4.9308 -3.6414 27 7 -3.3106 5.9135 -2.5516 28 6 -4.6728 6.4481 -2.4231 29 6 -2.8529 5.3277 -1.2839 30 6 -1.4053 4.8551 -1.4365 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5139 0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 5.8770 0.4816 2.1128 37 1 2.2720 2.1232 -1.9977 38 1 -1.8124 1.4717 -3.2847 39 1 -1.7465 -0.1593 -5.1282 40 1 0.1893 -0.2210 -6.6488 41 1 2.0548 1.3547 -6.3317 42 1 1.9845 2.9920 -4.4938 43 1 -1.1494 5.3062 -4.0527 44 1 -1.7271 3.7078 -4.5826 45 1 -3.8694 4.0782 -3.4096 46 1 -3.5635 5.3917 -4.5716 47 1 -4.6887 7.2213 -1.6551 48 1 -4.9866 6.8755 -3.3755 49 1 -5.3537 5.6442 -2.1436 50 1 -3.4870 4.4797 -1.0253 51 1 -2.9094 6.0779 -0.4950 52 1 -1.0733 4.3942 -0.5062 53 1 -0.7669 5.7077 -1.6682 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183838538.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:54 Heat of formation + Delta-G solvation = -1.832314 kcal Electronic energy + Delta-G solvation = -32415.096209 eV Core-core repulsion = 28479.314546 eV Total energy + Delta-G solvation = -3935.781662 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.72413 -39.89766 -39.58831 -37.29299 -36.19550 -34.44547 -33.55729 -32.45863 -31.92251 -31.62460 -29.67360 -29.29130 -26.90577 -24.75727 -24.58981 -24.16415 -23.41723 -22.95454 -21.88835 -21.08700 -20.72874 -19.13819 -17.96723 -17.73652 -17.53914 -17.08979 -16.61279 -16.27877 -16.03723 -15.92009 -15.74410 -15.59561 -15.45903 -15.17739 -14.98774 -14.72596 -14.31779 -14.19751 -14.12007 -13.85281 -13.74269 -13.52183 -13.29710 -13.28945 -12.95881 -12.83406 -12.76368 -12.67843 -12.38879 -12.24813 -12.15099 -11.98206 -11.87633 -11.79369 -11.61990 -11.35080 -11.23151 -10.86698 -10.64526 -9.75581 -9.73805 -9.55328 -9.41729 -9.25799 -8.38177 -6.43275 0.40424 0.56362 1.26408 1.34295 1.44078 1.76079 2.24292 2.25850 2.78057 2.97285 2.97982 3.12189 3.64011 3.86664 3.92436 3.97224 4.09379 4.19861 4.22924 4.24175 4.26281 4.32380 4.34114 4.38739 4.39862 4.48338 4.60321 4.61981 4.66422 4.69440 4.76681 4.84158 4.85032 4.91840 4.98336 5.00309 5.03045 5.07754 5.08260 5.12453 5.22029 5.25296 5.41749 5.51756 5.59710 5.62599 5.67970 5.69172 5.87847 5.94006 6.11172 6.13371 6.15590 6.17470 6.58321 6.89383 7.19957 7.47167 8.77044 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.010650 B = 0.003945 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.453702 B = 7095.337101 C = 8682.297752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.134 4.134 3 C 0.255 3.745 4 H 0.024 0.976 5 C -0.532 4.532 6 H 0.055 0.945 7 C 0.031 3.969 8 N -0.933 5.933 9 Si 0.935 3.065 10 H -0.262 1.262 11 H -0.293 1.293 12 H -0.260 1.260 13 N -0.697 5.697 14 C 0.516 3.484 15 O -0.555 6.555 16 C 0.118 3.882 17 H 0.075 0.925 18 C -0.088 4.088 19 C -0.096 4.096 20 C -0.127 4.127 21 C -0.117 4.117 22 C -0.121 4.121 23 C -0.119 4.119 24 N -0.517 5.517 25 C 0.061 3.939 26 C 0.063 3.937 27 N -0.556 5.556 28 C 0.026 3.974 29 C 0.070 3.930 30 C 0.047 3.953 31 H 0.055 0.945 32 H 0.037 0.963 33 H 0.053 0.947 34 H 0.042 0.958 35 H 0.062 0.938 36 H 0.270 0.730 37 H 0.401 0.599 38 H 0.115 0.885 39 H 0.137 0.863 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.131 0.869 43 H 0.038 0.962 44 H 0.089 0.911 45 H 0.035 0.965 46 H 0.098 0.902 47 H 0.073 0.927 48 H 0.081 0.919 49 H 0.025 0.975 50 H 0.031 0.969 51 H 0.085 0.915 52 H 0.087 0.913 53 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.519 5.235 -16.021 24.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.172 4.172 3 C 0.150 3.850 4 H 0.041 0.959 5 C -0.570 4.570 6 H 0.073 0.927 7 C -0.168 4.168 8 N -0.572 5.572 9 Si 0.763 3.237 10 H -0.188 1.188 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.346 5.346 14 C 0.302 3.698 15 O -0.434 6.434 16 C 0.006 3.994 17 H 0.093 0.907 18 C -0.089 4.089 19 C -0.115 4.115 20 C -0.145 4.145 21 C -0.134 4.134 22 C -0.139 4.139 23 C -0.138 4.138 24 N -0.242 5.242 25 C -0.067 4.067 26 C -0.065 4.065 27 N -0.281 5.281 28 C -0.121 4.121 29 C -0.059 4.059 30 C -0.081 4.081 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.235 0.765 38 H 0.133 0.867 39 H 0.155 0.845 40 H 0.162 0.838 41 H 0.161 0.839 42 H 0.149 0.851 43 H 0.056 0.944 44 H 0.107 0.893 45 H 0.054 0.946 46 H 0.116 0.884 47 H 0.092 0.908 48 H 0.100 0.900 49 H 0.043 0.957 50 H 0.049 0.951 51 H 0.103 0.897 52 H 0.105 0.895 53 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -17.918 5.176 -15.231 24.080 hybrid contribution 0.537 -0.347 0.837 1.053 sum -17.382 4.829 -14.394 23.079 Atomic orbital electron populations 1.21725 0.95128 1.00269 1.01632 1.22168 0.95848 0.98585 1.00628 1.18738 0.93105 0.89482 0.83691 0.95855 1.21278 0.90373 1.38495 1.06857 0.92687 1.25514 0.95690 0.95849 0.99785 1.69970 1.10231 1.46181 1.30829 0.86054 0.79374 0.79904 0.78403 1.18751 1.22064 1.18439 1.45949 1.15612 1.56150 1.16885 1.20543 0.81443 0.78652 0.89201 1.90577 1.51598 1.59757 1.41468 1.20330 0.91832 0.96068 0.91185 0.90723 1.19328 0.96389 0.97507 0.95687 1.21011 0.98092 0.94596 0.97790 1.21388 0.99425 0.98619 0.95100 1.21497 0.93476 0.98854 0.99618 1.21376 0.99431 0.95198 0.97917 1.21231 0.97343 0.99974 0.95233 1.61842 1.20445 1.36034 1.05908 1.22231 0.95733 0.97766 0.90968 1.22153 0.95498 0.93584 0.95269 1.62235 1.24972 1.35657 1.05215 1.22384 0.87144 0.99275 1.03335 1.22012 0.94464 0.97481 0.91896 1.22413 0.96930 0.92617 0.96111 0.92623 0.94413 0.92756 0.93944 0.91897 0.92106 0.76486 0.86675 0.84474 0.83772 0.83884 0.85124 0.94401 0.89304 0.94645 0.88390 0.90839 0.90010 0.95674 0.95052 0.89670 0.89495 0.95158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.16 8.52 71.98 0.61 -4.54 16 2 C -0.13 -5.88 5.11 30.59 0.16 -5.72 16 3 C 0.25 12.04 1.83 44.24 0.08 12.12 16 4 H 0.02 1.24 6.63 -2.39 -0.02 1.22 16 5 C -0.53 -29.07 9.31 25.60 0.24 -28.84 16 6 H 0.05 3.20 7.98 -2.91 -0.02 3.18 16 7 C 0.03 1.78 5.45 84.66 0.46 2.24 16 8 N -0.93 -56.10 13.96 21.45 0.30 -55.81 16 9 Si 0.94 45.12 24.41 68.60 1.67 46.79 16 10 H -0.26 -11.95 6.83 99.48 0.68 -11.27 16 11 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 12 H -0.26 -12.43 6.53 99.48 0.65 -11.78 16 13 N -0.70 -27.55 4.92 -446.11 -2.20 -29.74 16 14 C 0.52 18.91 5.40 87.66 0.47 19.38 16 15 O -0.55 -23.32 10.97 -3.03 -0.03 -23.35 16 16 C 0.12 3.36 2.09 43.43 0.09 3.45 16 17 H 0.08 2.04 8.00 -2.38 -0.02 2.02 16 18 C -0.09 -2.22 3.51 -19.87 -0.07 -2.29 16 19 C -0.10 -2.37 8.13 22.27 0.18 -2.19 16 20 C -0.13 -2.57 10.05 22.27 0.22 -2.35 16 21 C -0.12 -2.10 10.05 22.27 0.22 -1.88 16 22 C -0.12 -2.31 10.05 22.27 0.22 -2.08 16 23 C -0.12 -2.64 9.51 22.27 0.21 -2.43 16 24 N -0.52 -14.04 3.73 -879.28 -3.28 -17.32 16 25 C 0.06 1.33 5.21 86.31 0.45 1.78 16 26 C 0.06 1.23 5.62 86.31 0.49 1.71 16 27 N -0.56 -11.66 4.97 -921.93 -4.58 -16.24 16 28 C 0.03 0.42 9.60 127.69 1.23 1.64 16 29 C 0.07 1.70 5.62 86.31 0.49 2.19 16 30 C 0.05 1.35 5.21 86.31 0.45 1.80 16 31 H 0.05 2.19 5.65 -2.39 -0.01 2.18 16 32 H 0.04 1.58 7.85 -2.39 -0.02 1.56 16 33 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.04 1.95 3.22 -2.39 -0.01 1.94 16 35 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 37 H 0.40 14.55 8.27 -92.71 -0.77 13.78 16 38 H 0.12 3.14 7.73 -2.91 -0.02 3.12 16 39 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 40 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 41 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 42 H 0.13 2.59 8.04 -2.91 -0.02 2.57 16 43 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.09 1.85 6.07 -2.39 -0.01 1.84 16 45 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.10 1.49 8.13 -2.39 -0.02 1.47 16 47 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.08 1.03 8.13 -2.39 -0.02 1.01 16 49 H 0.02 0.40 8.14 -2.39 -0.02 0.38 16 50 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 52 H 0.09 3.05 5.29 -2.39 -0.01 3.04 16 53 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -65.67 400.40 -1.86 -67.53 By element: Atomic # 1 Polarization: 34.09 SS G_CDS: 0.04 Total: 34.13 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 6.20 Total: -6.00 kcal Atomic # 7 Polarization: -109.36 SS G_CDS: -9.75 Total: -119.11 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.03 Total: -23.35 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.67 Total: 46.79 kcal Total: -65.67 -1.86 -67.53 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183838538.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.700 kcal (2) G-P(sol) polarization free energy of solvation -65.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds