Wall clock time and date at job start Wed Apr 1 2020 04:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47116 * 2 1 4 4 H 1.09005 * 109.47224 * 55.00136 * 3 2 1 5 5 C 1.50700 * 109.47304 * 175.00041 * 3 2 1 6 6 H 1.07999 * 120.00156 * 119.99980 * 5 3 2 7 7 C 1.37887 * 119.99825 * 300.00353 * 5 3 2 8 8 N 1.31510 * 119.99562 * 179.97438 * 7 5 3 9 9 Si 1.86792 * 120.00083 * 359.97438 * 7 5 3 10 10 H 1.48494 * 109.47569 * 89.99961 * 9 7 5 11 11 H 1.48502 * 109.46942 * 210.00159 * 9 7 5 12 12 H 1.48504 * 109.47008 * 329.99870 * 9 7 5 13 13 N 1.46495 * 109.47490 * 295.00220 * 3 2 1 14 14 C 1.34777 * 119.99947 * 84.99550 * 13 3 2 15 15 O 1.21283 * 120.00331 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99894 * 180.02562 * 14 13 3 17 17 H 1.08997 * 109.47232 * 34.22487 * 16 14 13 18 18 C 1.50701 * 109.47373 * 274.22180 * 16 14 13 19 19 C 1.38235 * 119.99977 * 286.35572 * 18 16 14 20 20 C 1.38238 * 119.99835 * 179.76494 * 19 18 16 21 21 C 1.38235 * 119.99848 * 0.49994 * 20 19 18 22 22 C 1.38230 * 120.00375 * 359.75264 * 21 20 19 23 23 C 1.38235 * 119.99843 * 106.62062 * 18 16 14 24 24 N 1.46902 * 109.47436 * 154.22264 * 16 14 13 25 25 C 1.46962 * 110.99945 * 299.32738 * 24 16 14 26 26 C 1.53051 * 109.36276 * 176.80623 * 25 24 16 27 27 N 1.46954 * 109.36146 * 58.40305 * 26 25 24 28 28 C 1.46907 * 110.99808 * 176.81013 * 27 26 25 29 29 C 1.46952 * 110.88106 * 300.67632 * 27 26 25 30 30 C 1.46949 * 111.00328 * 175.52413 * 24 16 14 31 31 H 1.09006 * 109.46877 * 299.99876 * 1 2 3 32 32 H 1.09005 * 109.47102 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47435 * 59.99829 * 1 2 3 34 34 H 1.08998 * 109.47435 * 120.00171 * 2 1 3 35 35 H 1.08997 * 109.46740 * 239.99956 * 2 1 3 36 36 H 0.97001 * 120.00222 * 180.02562 * 8 7 5 37 37 H 0.96998 * 120.00180 * 265.00718 * 13 3 2 38 38 H 1.07996 * 119.99851 * 359.97438 * 19 18 16 39 39 H 1.07997 * 119.99828 * 180.22894 * 20 19 18 40 40 H 1.08000 * 119.99593 * 179.72811 * 21 20 19 41 41 H 1.07990 * 120.00528 * 179.97438 * 22 21 20 42 42 H 1.07996 * 120.00566 * 0.02562 * 23 18 16 43 43 H 1.08996 * 109.48738 * 296.77617 * 25 24 16 44 44 H 1.09005 * 109.48624 * 56.83760 * 25 24 16 45 45 H 1.08997 * 109.49075 * 298.43122 * 26 25 24 46 46 H 1.09003 * 109.50297 * 178.37682 * 26 25 24 47 47 H 1.08992 * 109.47033 * 183.80271 * 28 27 26 48 48 H 1.09007 * 109.46584 * 303.79669 * 28 27 26 49 49 H 1.08992 * 109.47061 * 63.79596 * 28 27 26 50 50 H 1.09009 * 109.48999 * 299.35378 * 29 27 26 51 51 H 1.09004 * 109.50831 * 179.30299 * 29 27 26 52 52 H 1.09000 * 109.49137 * 303.15700 * 30 24 16 53 53 H 1.09003 * 109.49206 * 63.19983 * 30 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 5.4540 0.8795 1.3358 9 14 3.0964 0.1100 2.5707 10 1 2.8744 -1.3261 2.2646 11 1 3.7942 0.2359 3.8754 12 1 1.7881 0.8093 2.6395 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6644 -1.3668 15 8 -0.3394 2.6326 -0.4340 16 6 0.0362 3.3378 -2.6547 17 1 0.4819 2.8066 -3.4956 18 6 0.5220 4.7643 -2.6471 19 6 -0.1105 5.7057 -1.8568 20 6 0.3381 7.0132 -1.8462 21 6 1.4128 7.3815 -2.6338 22 6 2.0420 6.4414 -3.4282 23 6 1.5966 5.1327 -3.4348 24 7 -1.4270 3.3195 -2.7841 25 6 -1.9361 1.9411 -2.8112 26 6 -3.4654 1.9661 -2.8663 27 7 -3.8979 2.7077 -4.0589 28 6 -5.3612 2.6895 -4.1883 29 6 -3.3888 4.0860 -4.0319 30 6 -1.8595 4.0611 -3.9767 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 -0.8899 34 1 1.8934 -0.5138 0.8899 35 1 1.8932 -0.5138 -0.8900 36 1 5.8772 0.4811 2.1123 37 1 2.2718 2.1232 -1.9977 38 1 -0.9530 5.4189 -1.2450 39 1 -0.1537 7.7478 -1.2259 40 1 1.7605 8.4040 -2.6289 41 1 2.8812 6.7292 -4.0438 42 1 2.0878 4.3983 -4.0559 43 1 -1.5488 1.4276 -3.6911 44 1 -1.6131 1.4165 -1.9120 45 1 -3.8536 2.4555 -1.9730 46 1 -3.8445 0.9453 -2.9155 47 1 -5.6503 3.1870 -5.1140 48 1 -5.7115 1.6573 -4.2059 49 1 -5.8073 3.2102 -3.3412 50 1 -3.7762 4.5996 -3.1519 51 1 -3.7118 4.6110 -4.9309 52 1 -1.4808 5.0820 -3.9273 53 1 -1.4710 3.5720 -4.8700 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183838576.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:03 Heat of formation + Delta-G solvation = -5.920575 kcal Electronic energy + Delta-G solvation = -32311.792005 eV Core-core repulsion = 28375.833062 eV Total energy + Delta-G solvation = -3935.958942 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.69120 -39.91978 -39.59756 -37.24102 -36.24275 -34.40244 -33.54442 -32.50834 -31.95279 -31.68796 -29.72786 -29.28017 -26.90422 -24.92496 -24.52563 -24.10813 -23.46368 -23.00577 -21.84316 -21.12316 -20.70972 -19.13686 -18.00595 -17.81667 -17.54455 -17.03883 -16.66356 -16.15056 -16.09518 -15.97644 -15.73530 -15.58030 -15.48359 -15.19282 -14.96276 -14.75057 -14.33534 -14.14239 -14.12986 -13.89990 -13.72283 -13.62320 -13.31345 -13.27192 -12.97251 -12.88953 -12.76069 -12.69237 -12.41965 -12.26148 -12.13187 -11.95734 -11.86151 -11.82375 -11.65234 -11.33869 -11.23940 -10.85836 -10.72529 -9.78672 -9.74792 -9.57873 -9.45027 -9.27568 -8.38417 -6.43322 0.37209 0.54166 1.25287 1.33780 1.43468 1.78754 2.23521 2.25425 2.76223 2.95830 2.97458 3.11056 3.64666 3.84123 3.91049 3.95617 4.05787 4.17546 4.20827 4.22483 4.23647 4.31424 4.32321 4.35626 4.39271 4.47215 4.54590 4.61584 4.64384 4.68641 4.74801 4.78045 4.84894 4.88106 4.95812 5.00449 5.00808 5.02723 5.06842 5.13231 5.19585 5.27778 5.41280 5.52364 5.56958 5.61308 5.64907 5.67739 5.84836 5.92201 6.09741 6.10661 6.13306 6.17374 6.58407 6.90470 7.19959 7.48431 8.76871 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.010158 B = 0.004085 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.848001 B = 6853.079339 C = 8976.091241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.136 4.136 3 C 0.255 3.745 4 H 0.018 0.982 5 C -0.531 4.531 6 H 0.055 0.945 7 C 0.031 3.969 8 N -0.933 5.933 9 Si 0.935 3.065 10 H -0.259 1.259 11 H -0.294 1.294 12 H -0.262 1.262 13 N -0.700 5.700 14 C 0.516 3.484 15 O -0.556 6.556 16 C 0.121 3.879 17 H 0.078 0.922 18 C -0.091 4.091 19 C -0.098 4.098 20 C -0.133 4.133 21 C -0.117 4.117 22 C -0.124 4.124 23 C -0.116 4.116 24 N -0.521 5.521 25 C 0.054 3.946 26 C 0.067 3.933 27 N -0.552 5.552 28 C 0.026 3.974 29 C 0.062 3.938 30 C 0.063 3.937 31 H 0.035 0.965 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.042 0.958 35 H 0.068 0.932 36 H 0.270 0.730 37 H 0.402 0.598 38 H 0.111 0.889 39 H 0.135 0.865 40 H 0.146 0.854 41 H 0.146 0.854 42 H 0.136 0.864 43 H 0.042 0.958 44 H 0.071 0.929 45 H 0.029 0.971 46 H 0.090 0.910 47 H 0.081 0.919 48 H 0.075 0.925 49 H 0.024 0.976 50 H 0.032 0.968 51 H 0.099 0.901 52 H 0.084 0.916 53 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.905 8.389 -14.893 24.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.175 4.175 3 C 0.150 3.850 4 H 0.036 0.964 5 C -0.569 4.569 6 H 0.073 0.927 7 C -0.169 4.169 8 N -0.572 5.572 9 Si 0.763 3.237 10 H -0.184 1.184 11 H -0.221 1.221 12 H -0.187 1.187 13 N -0.350 5.350 14 C 0.301 3.699 15 O -0.435 6.435 16 C 0.009 3.991 17 H 0.095 0.905 18 C -0.092 4.092 19 C -0.117 4.117 20 C -0.150 4.150 21 C -0.135 4.135 22 C -0.142 4.142 23 C -0.134 4.134 24 N -0.246 5.246 25 C -0.074 4.074 26 C -0.061 4.061 27 N -0.277 5.277 28 C -0.122 4.122 29 C -0.066 4.066 30 C -0.064 4.064 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.236 0.764 38 H 0.129 0.871 39 H 0.153 0.847 40 H 0.163 0.837 41 H 0.164 0.836 42 H 0.154 0.846 43 H 0.061 0.939 44 H 0.089 0.911 45 H 0.048 0.952 46 H 0.108 0.892 47 H 0.100 0.900 48 H 0.093 0.907 49 H 0.042 0.958 50 H 0.051 0.949 51 H 0.117 0.883 52 H 0.103 0.897 53 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -17.319 8.295 -14.114 23.831 hybrid contribution 0.472 -0.523 0.885 1.131 sum -16.846 7.771 -13.229 22.786 Atomic orbital electron populations 1.21820 0.95124 1.00564 1.01690 1.22193 0.95932 0.98399 1.00947 1.18722 0.93098 0.89533 0.83660 0.96374 1.21286 0.90388 1.38385 1.06885 0.92675 1.25522 0.95696 0.95918 0.99764 1.69973 1.10217 1.46189 1.30850 0.86056 0.79265 0.79995 0.78423 1.18434 1.22130 1.18711 1.46009 1.15722 1.56237 1.17018 1.20554 0.81613 0.77933 0.89772 1.90648 1.51991 1.59635 1.41177 1.20343 0.89965 0.93971 0.94796 0.90488 1.19354 0.97653 0.92819 0.99347 1.21037 0.99490 0.93444 0.97692 1.21395 0.97833 0.95953 0.99858 1.21507 0.95434 1.00767 0.95814 1.21411 1.00347 0.92726 0.99733 1.21277 0.95683 0.97595 0.98873 1.61833 1.07269 1.15064 1.40430 1.22250 0.95569 0.88828 1.00737 1.22036 0.93853 0.99197 0.91019 1.62231 1.12277 1.14386 1.38836 1.22392 0.85721 1.02754 1.01306 1.22156 0.93787 0.89189 1.01439 1.22186 0.95390 0.98917 0.89952 0.94605 0.92276 0.92289 0.93942 0.91335 0.92117 0.76389 0.87102 0.84663 0.83653 0.83605 0.84582 0.93948 0.91100 0.95236 0.89173 0.89998 0.90656 0.95776 0.94933 0.88319 0.89739 0.93828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.15 8.51 71.98 0.61 -4.54 16 2 C -0.14 -5.87 5.11 30.59 0.16 -5.71 16 3 C 0.25 12.08 1.83 44.25 0.08 12.16 16 4 H 0.02 0.99 6.63 -2.38 -0.02 0.97 16 5 C -0.53 -29.16 9.31 25.60 0.24 -28.92 16 6 H 0.06 3.23 7.98 -2.91 -0.02 3.20 16 7 C 0.03 1.75 5.45 84.66 0.46 2.21 16 8 N -0.93 -56.31 13.96 21.45 0.30 -56.01 16 9 Si 0.94 45.30 24.41 68.60 1.67 46.98 16 10 H -0.26 -11.74 6.83 99.48 0.68 -11.06 16 11 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 12 H -0.26 -12.71 6.53 99.48 0.65 -12.06 16 13 N -0.70 -27.63 5.02 -446.10 -2.24 -29.87 16 14 C 0.52 19.01 4.65 87.66 0.41 19.42 16 15 O -0.56 -23.99 12.78 -3.04 -0.04 -24.02 16 16 C 0.12 3.45 2.07 43.42 0.09 3.54 16 17 H 0.08 1.95 7.94 -2.39 -0.02 1.93 16 18 C -0.09 -2.47 3.51 -19.87 -0.07 -2.54 16 19 C -0.10 -2.76 8.41 22.27 0.19 -2.57 16 20 C -0.13 -3.11 10.05 22.27 0.22 -2.88 16 21 C -0.12 -2.40 10.05 22.27 0.22 -2.17 16 22 C -0.12 -2.58 10.05 22.27 0.22 -2.35 16 23 C -0.12 -2.72 9.67 22.27 0.22 -2.50 16 24 N -0.52 -13.95 3.82 -879.29 -3.36 -17.31 16 25 C 0.05 1.43 5.29 86.31 0.46 1.89 16 26 C 0.07 1.54 5.62 86.31 0.49 2.02 16 27 N -0.55 -10.99 4.97 -921.94 -4.58 -15.57 16 28 C 0.03 0.39 9.60 127.69 1.23 1.62 16 29 C 0.06 1.20 5.62 86.31 0.49 1.69 16 30 C 0.06 1.37 5.25 86.31 0.45 1.82 16 31 H 0.03 1.48 7.85 -2.38 -0.02 1.46 16 32 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 33 H 0.06 2.18 3.85 -2.39 -0.01 2.17 16 34 H 0.04 1.93 3.22 -2.39 -0.01 1.92 16 35 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 36 H 0.27 15.29 8.31 -92.71 -0.77 14.51 16 37 H 0.40 14.27 8.54 -92.71 -0.79 13.47 16 38 H 0.11 3.52 7.91 -2.91 -0.02 3.49 16 39 H 0.14 2.63 8.06 -2.91 -0.02 2.60 16 40 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 41 H 0.15 2.26 8.06 -2.92 -0.02 2.24 16 42 H 0.14 2.69 7.99 -2.91 -0.02 2.67 16 43 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.07 2.23 4.54 -2.38 -0.01 2.22 16 45 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.09 1.81 8.13 -2.39 -0.02 1.79 16 47 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.07 1.01 8.13 -2.38 -0.02 0.99 16 49 H 0.02 0.37 8.14 -2.39 -0.02 0.35 16 50 H 0.03 0.70 8.14 -2.38 -0.02 0.68 16 51 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 52 H 0.08 1.82 6.27 -2.39 -0.01 1.81 16 53 H 0.04 0.92 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -67.70 400.20 -2.06 -69.76 By element: Atomic # 1 Polarization: 33.86 SS G_CDS: 0.02 Total: 33.89 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: 6.16 Total: -7.84 kcal Atomic # 7 Polarization: -108.88 SS G_CDS: -9.88 Total: -118.76 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.04 Total: -24.02 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.67 Total: 46.98 kcal Total: -67.70 -2.06 -69.76 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183838576.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.837 kcal (2) G-P(sol) polarization free energy of solvation -67.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds