Wall clock time and date at job start Wed Apr 1 2020 04:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47258 * 2 1 4 4 H 1.08998 * 109.46991 * 305.54790 * 3 2 1 5 5 C 1.50703 * 109.46993 * 185.55161 * 3 2 1 6 6 H 1.07999 * 119.99715 * 245.60397 * 5 3 2 7 7 C 1.37879 * 120.00117 * 65.60375 * 5 3 2 8 8 N 1.31512 * 119.99978 * 196.28070 * 7 5 3 9 9 Si 1.86805 * 119.99966 * 16.28830 * 7 5 3 10 10 H 1.48497 * 109.46898 * 179.97438 * 9 7 5 11 11 H 1.48499 * 109.46827 * 299.99551 * 9 7 5 12 12 H 1.48494 * 109.47116 * 59.99840 * 9 7 5 13 13 N 1.46499 * 109.47140 * 65.55383 * 3 2 1 14 14 C 1.34781 * 119.99694 * 275.00048 * 13 3 2 15 15 O 1.21601 * 120.00008 * 359.97438 * 14 13 3 16 16 C 1.47519 * 119.99895 * 179.97438 * 14 13 3 17 17 C 1.39791 * 120.06976 * 359.72610 * 16 14 13 18 18 C 1.37615 * 119.92947 * 179.72224 * 17 16 14 19 19 C 1.39217 * 120.06526 * 0.57106 * 18 17 16 20 20 N 1.39055 * 119.92335 * 179.72119 * 19 18 17 21 21 C 1.46959 * 110.99616 * 123.78198 * 20 19 18 22 22 C 1.53053 * 109.36191 * 176.80741 * 21 20 19 23 23 N 1.46953 * 109.36303 * 58.40209 * 22 21 20 24 24 C 1.46905 * 111.00089 * 176.80923 * 23 22 21 25 25 C 1.52996 * 109.47104 * 313.80216 * 24 23 22 26 26 C 1.46959 * 110.88174 * 300.67615 * 23 22 21 27 27 C 1.46953 * 111.00262 * 359.97438 * 20 19 18 28 28 C 1.39213 * 120.14244 * 359.70228 * 19 18 17 29 29 C 1.37614 * 120.06873 * 359.97438 * 28 19 18 30 30 H 1.08996 * 109.47553 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47111 * 300.00221 * 1 2 3 32 32 H 1.09006 * 109.47148 * 60.00076 * 1 2 3 33 33 H 1.08999 * 109.47111 * 239.99779 * 2 1 3 34 34 H 1.09000 * 109.47249 * 120.00370 * 2 1 3 35 35 H 0.97001 * 119.99819 * 354.83996 * 8 7 5 36 36 H 0.96993 * 120.00114 * 95.00036 * 13 3 2 37 37 H 1.08006 * 120.03475 * 0.02562 * 17 16 14 38 38 H 1.07999 * 119.95884 * 180.29635 * 18 17 16 39 39 H 1.09004 * 109.48770 * 296.77441 * 21 20 19 40 40 H 1.08997 * 109.48796 * 56.84092 * 21 20 19 41 41 H 1.09001 * 109.48759 * 298.43422 * 22 21 20 42 42 H 1.08997 * 109.48573 * 178.36862 * 22 21 20 43 43 H 1.08998 * 109.46652 * 73.79730 * 24 23 22 44 44 H 1.08996 * 109.47049 * 193.79620 * 24 23 22 45 45 H 1.09000 * 109.46836 * 299.99845 * 25 24 23 46 46 H 1.09002 * 109.47455 * 59.99371 * 25 24 23 47 47 H 1.08993 * 109.47309 * 179.97438 * 25 24 23 48 48 H 1.09004 * 109.48770 * 299.35620 * 26 23 22 49 49 H 1.08999 * 109.49261 * 179.29192 * 26 23 22 50 50 H 1.09006 * 109.49045 * 303.15085 * 27 20 19 51 51 H 1.08994 * 109.49354 * 63.22053 * 27 20 19 52 52 H 1.07996 * 119.96745 * 180.02562 * 28 19 18 53 53 H 1.07993 * 120.03683 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5978 1.9842 -0.8361 5 6 3.5407 1.4446 -0.1375 6 1 4.1567 1.8041 0.6736 7 6 4.1273 0.9878 -1.2986 8 7 5.4073 0.6860 -1.3140 9 14 3.1041 0.7977 -2.8498 10 1 3.9637 0.2944 -3.9512 11 1 2.0025 -0.1666 -2.6010 12 1 2.5329 2.1144 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4476 2.6600 1.3854 15 8 -0.3373 2.6312 0.4570 16 6 0.0686 3.3150 2.6517 17 6 0.9677 3.3439 3.7218 18 6 0.6133 3.9607 4.8998 19 6 -0.6435 4.5451 5.0305 20 7 -1.0007 5.1625 6.2242 21 6 -1.3985 6.5587 5.9964 22 6 -1.8589 7.1773 7.3185 23 7 -0.7682 7.0969 8.2999 24 6 -1.1456 7.7492 9.5610 25 6 -1.7858 9.1062 9.2616 26 6 -0.3704 5.7007 8.5278 27 6 0.0900 5.0819 7.2057 28 6 -1.5432 4.5130 3.9687 29 6 -1.1923 3.9035 2.7858 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 5.9549 0.8550 -0.5314 36 1 2.2901 2.1167 1.9977 37 1 1.9412 2.8869 3.6224 38 1 1.3093 3.9875 5.7252 39 1 -0.5486 7.1203 5.6085 40 1 -2.2156 6.5910 5.2757 41 1 -2.7257 6.6324 7.6925 42 1 -2.1271 8.2214 7.1574 43 1 -1.8582 7.1213 10.0957 44 1 -0.2569 7.8942 10.1751 45 1 -1.0731 9.7340 8.7268 46 1 -2.6745 8.9611 8.6474 47 1 -2.0662 9.5899 10.1972 48 1 -1.2202 5.1390 8.9156 49 1 0.4467 5.6683 9.2485 50 1 0.3580 4.0377 7.3668 51 1 0.9568 5.6267 6.8318 52 1 -2.5173 4.9675 4.0730 53 1 -1.8905 3.8793 1.9623 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183907169.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:39 Heat of formation + Delta-G solvation = -14.395018 kcal Electronic energy + Delta-G solvation = -30259.756927 eV Core-core repulsion = 26323.430505 eV Total energy + Delta-G solvation = -3936.326422 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.67748 -40.79187 -39.17413 -37.17023 -36.61888 -34.51238 -33.46496 -32.71072 -32.32184 -31.48752 -30.20954 -29.01297 -27.19395 -25.31441 -24.56267 -23.92173 -23.20916 -22.54449 -21.85072 -21.21350 -20.72576 -19.97199 -18.90427 -17.99056 -17.39937 -16.69084 -16.43978 -16.32557 -16.11495 -16.10198 -15.80390 -15.67110 -15.36693 -15.02796 -14.81014 -14.61357 -14.54021 -14.46993 -14.18669 -14.11729 -13.64557 -13.54743 -13.31099 -13.23862 -12.88698 -12.69484 -12.67709 -12.48590 -12.33753 -12.30135 -12.24694 -11.96862 -11.85203 -11.78459 -11.57212 -11.41067 -11.11732 -10.81969 -10.75719 -10.48808 -10.04324 -9.83710 -9.33714 -8.90956 -8.79788 -6.45002 -0.14441 0.37849 1.44806 1.49926 1.69251 1.89633 2.40324 2.47479 2.59387 2.87640 2.92455 3.00775 3.66260 3.79644 3.86520 3.92888 3.95088 4.06230 4.19769 4.22243 4.29837 4.31951 4.35536 4.39919 4.42358 4.45215 4.49061 4.54222 4.58706 4.59646 4.73732 4.80493 4.83016 4.85359 4.92991 4.98374 5.02414 5.08958 5.12471 5.13263 5.18700 5.21949 5.29445 5.30751 5.41516 5.53968 5.58388 5.66709 5.68946 5.86251 6.00064 6.03670 6.05654 6.19959 6.51952 6.83820 7.27313 7.42390 8.59158 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.024362 B = 0.001997 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.044053 B =14020.046427 C =14504.573307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.135 4.135 3 C 0.251 3.749 4 H 0.022 0.978 5 C -0.612 4.612 6 H 0.040 0.960 7 C -0.005 4.005 8 N -0.927 5.927 9 Si 1.070 2.930 10 H -0.282 1.282 11 H -0.243 1.243 12 H -0.275 1.275 13 N -0.700 5.700 14 C 0.545 3.455 15 O -0.582 6.582 16 C -0.177 4.177 17 C -0.058 4.058 18 C -0.178 4.178 19 C 0.139 3.861 20 N -0.492 5.492 21 C 0.058 3.942 22 C 0.055 3.945 23 N -0.552 5.552 24 C 0.051 3.949 25 C -0.154 4.154 26 C 0.059 3.941 27 C 0.048 3.952 28 C -0.148 4.148 29 C -0.042 4.042 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.258 0.742 36 H 0.400 0.600 37 H 0.133 0.867 38 H 0.153 0.847 39 H 0.047 0.953 40 H 0.097 0.903 41 H 0.041 0.959 42 H 0.102 0.898 43 H 0.035 0.965 44 H 0.080 0.920 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.070 0.930 48 H 0.040 0.960 49 H 0.097 0.903 50 H 0.096 0.904 51 H 0.056 0.944 52 H 0.150 0.850 53 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.076 13.858 24.381 32.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.174 4.174 3 C 0.146 3.854 4 H 0.040 0.960 5 C -0.650 4.650 6 H 0.058 0.942 7 C -0.206 4.206 8 N -0.562 5.562 9 Si 0.893 3.107 10 H -0.207 1.207 11 H -0.168 1.168 12 H -0.201 1.201 13 N -0.348 5.348 14 C 0.334 3.666 15 O -0.465 6.465 16 C -0.181 4.181 17 C -0.078 4.078 18 C -0.199 4.199 19 C 0.040 3.960 20 N -0.207 5.207 21 C -0.067 4.067 22 C -0.073 4.073 23 N -0.278 5.278 24 C -0.077 4.077 25 C -0.212 4.212 26 C -0.069 4.069 27 C -0.078 4.078 28 C -0.168 4.168 29 C -0.062 4.062 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.235 0.765 37 H 0.150 0.850 38 H 0.171 0.829 39 H 0.065 0.935 40 H 0.115 0.885 41 H 0.059 0.941 42 H 0.120 0.880 43 H 0.053 0.947 44 H 0.098 0.902 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.089 0.911 48 H 0.059 0.941 49 H 0.115 0.885 50 H 0.114 0.886 51 H 0.074 0.926 52 H 0.168 0.832 53 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.544 13.368 22.256 30.786 hybrid contribution 0.840 0.272 1.788 1.994 sum -15.704 13.640 24.043 31.792 Atomic orbital electron populations 1.21764 0.95590 1.00360 1.01370 1.22247 0.95341 0.98259 1.01573 1.18788 0.93572 0.89750 0.83290 0.95974 1.22267 0.91373 1.48122 1.03249 0.94215 1.26808 0.97744 0.92091 1.03931 1.70980 1.07976 1.43269 1.33978 0.83731 0.75201 0.78640 0.73135 1.20727 1.16777 1.20097 1.46035 1.15374 1.56146 1.17253 1.18673 0.81707 0.78157 0.88021 1.90695 1.51782 1.61684 1.42339 1.19918 0.97742 1.06371 0.94107 1.21305 0.98551 0.95852 0.92070 1.21416 0.96009 1.03621 0.98820 1.19189 0.92101 0.95340 0.89400 1.59053 1.37533 1.16574 1.07513 1.22424 1.01177 0.84626 0.98466 1.22296 0.92341 1.01652 0.91052 1.62288 1.38399 1.15909 1.11229 1.22122 0.99849 0.95459 0.90229 1.21915 1.00691 0.96045 1.02521 1.22180 1.00814 0.87619 0.96279 1.22471 0.91794 1.02078 0.91485 1.20847 1.00466 1.03678 0.91791 1.21136 0.94298 0.93025 0.97713 0.92421 0.93546 0.94024 0.92097 0.92753 0.93293 0.76455 0.84968 0.82943 0.93503 0.88491 0.94060 0.87995 0.94686 0.90170 0.92228 0.92118 0.91063 0.94148 0.88507 0.88612 0.92620 0.83219 0.85176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.38 8.53 71.98 0.61 -4.77 16 2 C -0.14 -6.06 5.27 30.59 0.16 -5.90 16 3 C 0.25 12.21 1.82 44.25 0.08 12.29 16 4 H 0.02 1.19 6.25 -2.39 -0.01 1.17 16 5 C -0.61 -33.84 9.01 25.60 0.23 -33.61 16 6 H 0.04 2.31 7.96 -2.91 -0.02 2.29 16 7 C -0.01 -0.29 5.32 84.66 0.45 0.16 16 8 N -0.93 -56.42 13.70 21.45 0.29 -56.12 16 9 Si 1.07 51.01 26.27 68.60 1.80 52.81 16 10 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 11 H -0.24 -10.55 5.67 99.48 0.56 -9.98 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 N -0.70 -29.27 4.98 -449.27 -2.24 -31.51 16 14 C 0.55 21.84 6.35 86.69 0.55 22.39 16 15 O -0.58 -26.60 13.48 -4.04 -0.05 -26.65 16 16 C -0.18 -5.61 5.88 -20.08 -0.12 -5.73 16 17 C -0.06 -1.53 9.53 22.50 0.21 -1.31 16 18 C -0.18 -3.78 8.78 22.36 0.20 -3.59 16 19 C 0.14 2.85 5.63 38.47 0.22 3.07 16 20 N -0.49 -8.18 4.74 -694.80 -3.29 -11.48 16 21 C 0.06 0.82 5.37 86.31 0.46 1.29 16 22 C 0.05 0.64 4.93 86.31 0.43 1.06 16 23 N -0.55 -6.78 4.86 -895.72 -4.35 -11.13 16 24 C 0.05 0.47 6.00 86.30 0.52 0.99 16 25 C -0.15 -1.16 9.18 71.98 0.66 -0.50 16 26 C 0.06 0.70 5.58 86.31 0.48 1.18 16 27 C 0.05 0.67 4.28 86.31 0.37 1.04 16 28 C -0.15 -3.20 9.16 22.36 0.20 -3.00 16 29 C -0.04 -1.16 9.58 22.50 0.22 -0.95 16 30 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.05 1.89 5.63 -2.39 -0.01 1.87 16 32 H 0.04 1.74 7.88 -2.38 -0.02 1.72 16 33 H 0.06 2.81 4.74 -2.39 -0.01 2.80 16 34 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.26 15.70 8.73 -92.71 -0.81 14.89 16 36 H 0.40 15.02 6.54 -92.71 -0.61 14.41 16 37 H 0.13 3.25 6.39 -2.91 -0.02 3.23 16 38 H 0.15 2.50 5.78 -2.91 -0.02 2.49 16 39 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.10 1.20 6.79 -2.39 -0.02 1.18 16 41 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.10 0.95 5.99 -2.39 -0.01 0.94 16 43 H 0.03 0.33 8.08 -2.39 -0.02 0.31 16 44 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.06 0.43 6.26 -2.39 -0.01 0.42 16 47 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 48 H 0.04 0.52 8.14 -2.38 -0.02 0.50 16 49 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.10 1.21 7.15 -2.38 -0.02 1.19 16 51 H 0.06 0.83 7.56 -2.39 -0.02 0.81 16 52 H 0.15 2.52 7.17 -2.91 -0.02 2.50 16 53 H 0.13 3.71 7.64 -2.91 -0.02 3.69 16 Total: -1.00 -68.45 397.92 -1.78 -70.23 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: 0.13 Total: 29.73 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: 5.94 Total: -15.89 kcal Atomic # 7 Polarization: -100.65 SS G_CDS: -9.59 Total: -110.24 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.05 Total: -26.65 kcal Atomic # 14 Polarization: 51.01 SS G_CDS: 1.80 Total: 52.81 kcal Total: -68.45 -1.78 -70.23 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183907169.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.834 kcal (2) G-P(sol) polarization free energy of solvation -68.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds