Wall clock time and date at job start Wed Apr 1 2020 04:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46783 * 2 1 4 4 H 1.09000 * 109.47153 * 54.99907 * 3 2 1 5 5 C 1.50702 * 109.47178 * 175.00043 * 3 2 1 6 6 H 1.07998 * 120.00513 * 119.99876 * 5 3 2 7 7 C 1.37880 * 119.99466 * 300.00314 * 5 3 2 8 8 N 1.31513 * 120.00519 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99606 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47435 * 89.99560 * 9 7 5 11 11 H 1.48503 * 109.46793 * 209.99639 * 9 7 5 12 12 H 1.48502 * 109.46846 * 329.99117 * 9 7 5 13 13 N 1.46501 * 109.47274 * 294.99784 * 3 2 1 14 14 C 1.34780 * 119.99842 * 85.00260 * 13 3 2 15 15 O 1.21547 * 120.00070 * 359.97438 * 14 13 3 16 16 C 1.47850 * 119.99762 * 180.02562 * 14 13 3 17 17 C 1.39575 * 120.14155 * 180.02562 * 16 14 13 18 18 C 1.37960 * 119.84989 * 180.02562 * 17 16 14 19 19 C 1.38354 * 120.14684 * 359.97093 * 18 17 16 20 20 C 1.50697 * 119.85235 * 179.97438 * 19 18 17 21 21 N 1.46903 * 109.46882 * 90.00495 * 20 19 18 22 22 C 1.46963 * 110.99595 * 66.17766 * 21 20 19 23 23 C 1.53056 * 109.35944 * 183.16796 * 22 21 20 24 24 N 1.46956 * 109.38342 * 301.62902 * 23 22 21 25 25 C 1.46899 * 111.00293 * 183.17592 * 24 23 22 26 26 C 1.46962 * 110.87987 * 59.31148 * 24 23 22 27 27 C 1.46956 * 111.00102 * 189.99751 * 21 20 19 28 28 C 1.38362 * 120.29133 * 0.28500 * 19 18 17 29 29 C 1.37959 * 120.14339 * 359.47934 * 28 19 18 30 30 H 1.08996 * 109.46554 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47351 * 299.99887 * 1 2 3 32 32 H 1.09002 * 109.47048 * 60.00498 * 1 2 3 33 33 H 1.08995 * 109.47351 * 240.00113 * 2 1 3 34 34 H 1.08997 * 109.47163 * 119.99954 * 2 1 3 35 35 H 0.96998 * 120.00163 * 180.02562 * 8 7 5 36 36 H 0.96996 * 120.00358 * 265.00181 * 13 3 2 37 37 H 1.07998 * 120.07362 * 0.03475 * 17 16 14 38 38 H 1.08007 * 119.92111 * 179.97438 * 18 17 16 39 39 H 1.09001 * 109.47655 * 330.00589 * 20 19 18 40 40 H 1.08997 * 109.47272 * 210.00278 * 20 19 18 41 41 H 1.08992 * 109.47287 * 63.21185 * 22 21 20 42 42 H 1.08994 * 109.50466 * 303.13858 * 22 21 20 43 43 H 1.09002 * 109.48813 * 181.65179 * 23 22 21 44 44 H 1.09002 * 109.48870 * 61.61068 * 23 22 21 45 45 H 1.09006 * 109.46670 * 60.00118 * 25 24 23 46 46 H 1.09000 * 109.47249 * 179.97438 * 25 24 23 47 47 H 1.08993 * 109.47127 * 300.00706 * 25 24 23 48 48 H 1.09001 * 109.48625 * 60.64585 * 26 24 23 49 49 H 1.09003 * 109.48941 * 180.69193 * 26 24 23 50 50 H 1.09002 * 109.48806 * 56.84348 * 27 21 20 51 51 H 1.09003 * 109.49203 * 296.77991 * 27 21 20 52 52 H 1.07999 * 119.92499 * 179.74545 * 28 19 18 53 53 H 1.08000 * 120.06856 * 180.25357 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8890 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3374 2.1733 9 14 6.0049 0.8814 1.3819 10 1 6.4416 2.1144 2.0850 11 1 6.4396 -0.3096 2.1550 12 1 6.6135 0.8417 0.0279 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3413 2.6318 -0.4324 16 6 0.0438 3.3249 -2.6305 17 6 -1.2159 3.9134 -2.7529 18 6 -1.5750 4.5276 -3.9348 19 6 -0.6894 4.5616 -4.9972 20 6 -1.0887 5.2339 -6.2855 21 7 -0.7049 6.6511 -6.2377 22 6 0.7569 6.7999 -6.2072 23 6 1.1133 8.2828 -6.0782 24 7 0.5343 9.0237 -7.2076 25 6 0.9181 10.4408 -7.1598 26 6 -0.9274 8.8747 -7.2376 27 6 -1.2838 7.3919 -7.3671 28 6 0.5589 3.9755 -4.8843 29 6 0.9323 3.3623 -3.7062 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.8292 -0.0604 2.9502 36 1 2.2719 2.1232 -1.9978 37 1 -1.9079 3.8881 -1.9241 38 1 -2.5496 4.9830 -4.0309 39 1 -2.1677 5.1540 -6.4178 40 1 -0.5833 4.7486 -7.1204 41 1 1.1819 6.4027 -7.1289 42 1 1.1607 6.2535 -5.3550 43 1 2.1971 8.3983 -6.0849 44 1 0.7118 8.6733 -5.1431 45 1 2.0039 10.5250 -7.2065 46 1 0.4766 10.9656 -8.0071 47 1 0.5590 10.8833 -6.2307 48 1 -1.3524 9.2716 -6.3157 49 1 -1.3313 9.4219 -8.0894 50 1 -2.3677 7.2764 -7.3604 51 1 -0.8820 7.0017 -8.3023 52 1 1.2440 4.0020 -5.7187 53 1 1.9085 2.9088 -3.6180 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183962054.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:25 Heat of formation + Delta-G solvation = -21.818315 kcal Electronic energy + Delta-G solvation = -30195.919426 eV Core-core repulsion = 26259.271106 eV Total energy + Delta-G solvation = -3936.648320 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.27310 -40.40575 -39.29310 -36.97943 -36.44978 -34.41098 -33.31987 -32.40763 -31.96530 -31.66639 -29.66108 -28.80404 -26.64847 -25.10928 -24.71563 -24.25217 -23.43868 -22.96669 -21.76239 -21.01292 -20.70814 -19.42016 -17.87407 -17.37796 -17.26290 -16.70898 -16.41276 -16.27538 -16.13961 -15.98027 -15.78054 -15.58021 -15.40922 -15.11215 -14.94211 -14.60895 -14.46622 -14.32477 -13.95160 -13.56124 -13.44196 -13.31554 -13.18681 -13.06338 -12.95634 -12.88727 -12.70135 -12.64551 -12.36631 -12.21151 -12.16682 -12.06902 -11.91858 -11.75327 -11.67915 -11.59678 -11.06994 -10.75885 -10.53139 -9.90194 -9.87961 -9.58647 -9.41468 -9.20991 -8.16535 -6.34153 -0.10509 0.45430 1.44643 1.45014 1.55720 1.97575 2.34819 2.61923 2.80969 2.98221 3.12734 3.17951 3.70403 3.84781 3.91893 3.96672 4.06056 4.10764 4.21527 4.29036 4.40072 4.42954 4.46314 4.47828 4.55473 4.56352 4.62721 4.64829 4.68471 4.73812 4.76327 4.86232 4.89781 4.92679 5.00398 5.02478 5.05016 5.07422 5.09612 5.23415 5.34182 5.41997 5.47103 5.55012 5.57448 5.60459 5.77895 5.90200 5.92884 5.96850 5.98691 6.15316 6.15469 6.16774 6.72991 6.95855 7.32083 7.53563 8.88994 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.014518 B = 0.002207 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.125097 B =12683.293395 C =14058.921722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.002 1.002 5 C -0.548 4.548 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.914 5.914 9 Si 0.971 3.029 10 H -0.279 1.279 11 H -0.283 1.283 12 H -0.259 1.259 13 N -0.699 5.699 14 C 0.538 3.462 15 O -0.588 6.588 16 C -0.146 4.146 17 C -0.078 4.078 18 C -0.104 4.104 19 C -0.054 4.054 20 C 0.098 3.902 21 N -0.546 5.546 22 C 0.056 3.944 23 C 0.057 3.943 24 N -0.555 5.555 25 C 0.025 3.975 26 C 0.056 3.944 27 C 0.059 3.941 28 C -0.115 4.115 29 C -0.088 4.088 30 H 0.047 0.953 31 H 0.025 0.975 32 H 0.040 0.960 33 H 0.041 0.959 34 H 0.074 0.926 35 H 0.265 0.735 36 H 0.401 0.599 37 H 0.119 0.881 38 H 0.147 0.853 39 H 0.101 0.899 40 H 0.058 0.942 41 H 0.045 0.955 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.028 0.972 45 H 0.072 0.928 46 H 0.079 0.921 47 H 0.022 0.978 48 H 0.032 0.968 49 H 0.094 0.906 50 H 0.095 0.905 51 H 0.044 0.956 52 H 0.150 0.850 53 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.329 15.181 -24.779 29.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.015 0.985 5 C -0.586 4.586 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.205 1.205 11 H -0.209 1.209 12 H -0.183 1.183 13 N -0.347 5.347 14 C 0.326 3.674 15 O -0.471 6.471 16 C -0.149 4.149 17 C -0.097 4.097 18 C -0.122 4.122 19 C -0.054 4.054 20 C -0.029 4.029 21 N -0.271 5.271 22 C -0.073 4.073 23 C -0.071 4.071 24 N -0.280 5.280 25 C -0.123 4.123 26 C -0.072 4.072 27 C -0.068 4.068 28 C -0.133 4.133 29 C -0.107 4.107 30 H 0.066 0.934 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.237 0.763 37 H 0.137 0.863 38 H 0.165 0.835 39 H 0.119 0.881 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.097 0.903 43 H 0.103 0.897 44 H 0.046 0.954 45 H 0.091 0.909 46 H 0.098 0.902 47 H 0.041 0.959 48 H 0.050 0.950 49 H 0.112 0.888 50 H 0.113 0.887 51 H 0.062 0.938 52 H 0.168 0.832 53 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.829 15.055 -23.949 29.351 hybrid contribution 1.136 -0.173 0.811 1.406 sum -6.694 14.882 -23.137 28.312 Atomic orbital electron populations 1.21681 0.97097 0.99170 1.00163 1.21782 0.93664 0.99064 1.01394 1.18412 0.93826 0.89211 0.81127 0.98457 1.21554 0.91231 1.39036 1.06825 0.91027 1.25783 1.03403 0.94320 0.94985 1.70047 1.37107 1.38288 1.09811 0.85364 0.79006 0.77415 0.78666 1.20494 1.20899 1.18328 1.46207 1.15242 1.55628 1.17669 1.18868 0.82021 0.78489 0.88021 1.90699 1.52605 1.61728 1.42036 1.20041 0.97260 1.03656 0.93928 1.21287 0.94671 0.95265 0.98467 1.21127 1.00930 0.98645 0.91527 1.20109 0.93605 0.95822 0.95911 1.21068 1.02325 0.86800 0.92706 1.62129 1.10324 1.10466 1.44214 1.22210 0.87864 0.95947 1.01237 1.22151 0.99898 0.93539 0.91541 1.62230 1.10610 1.11970 1.43142 1.22384 1.01938 0.87243 1.00762 1.22220 0.87318 0.96514 1.01178 1.22203 1.00363 0.92797 0.91476 1.21216 0.96614 0.97969 0.97540 1.21457 0.98954 0.97847 0.92393 0.93429 0.95531 0.94054 0.93996 0.90787 0.92562 0.76261 0.86308 0.83510 0.88092 0.92349 0.93633 0.90330 0.89729 0.95415 0.90923 0.90229 0.95934 0.95012 0.88800 0.88670 0.93770 0.83245 0.84574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.79 8.51 71.98 0.61 -5.18 16 2 C -0.12 -6.06 5.45 30.60 0.17 -5.89 16 3 C 0.28 14.59 2.24 44.25 0.10 14.69 16 4 H 0.00 -0.15 7.58 -2.39 -0.02 -0.17 16 5 C -0.55 -29.30 8.73 25.60 0.22 -29.08 16 6 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 7 C 0.02 0.83 5.29 84.66 0.45 1.27 16 8 N -0.91 -52.69 11.29 21.45 0.24 -52.45 16 9 Si 0.97 42.20 29.54 68.60 2.03 44.23 16 10 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 11 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 12 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 13 N -0.70 -30.18 4.97 -448.97 -2.23 -32.41 16 14 C 0.54 22.90 6.34 86.79 0.55 23.45 16 15 O -0.59 -29.63 13.48 -3.86 -0.05 -29.68 16 16 C -0.15 -4.76 5.87 -20.09 -0.12 -4.88 16 17 C -0.08 -2.29 9.60 22.53 0.22 -2.07 16 18 C -0.10 -2.26 9.68 22.23 0.22 -2.05 16 19 C -0.05 -1.00 4.89 -19.81 -0.10 -1.09 16 20 C 0.10 1.30 5.11 85.56 0.44 1.74 16 21 N -0.55 -8.19 4.70 -900.27 -4.23 -12.42 16 22 C 0.06 0.88 5.26 86.31 0.45 1.33 16 23 C 0.06 0.92 5.62 86.31 0.49 1.40 16 24 N -0.55 -8.09 4.97 -921.91 -4.58 -12.67 16 25 C 0.02 0.29 9.60 127.69 1.23 1.51 16 26 C 0.06 0.70 5.62 86.31 0.49 1.19 16 27 C 0.06 0.70 5.61 86.31 0.48 1.18 16 28 C -0.12 -2.23 7.91 22.23 0.18 -2.06 16 29 C -0.09 -2.23 9.54 22.53 0.21 -2.01 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.03 1.33 7.84 -2.39 -0.02 1.31 16 32 H 0.04 1.89 5.64 -2.39 -0.01 1.87 16 33 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.07 4.14 5.95 -2.39 -0.01 4.13 16 35 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 36 H 0.40 14.71 6.57 -92.71 -0.61 14.10 16 37 H 0.12 3.78 7.65 -2.91 -0.02 3.75 16 38 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 39 H 0.10 1.07 7.97 -2.39 -0.02 1.05 16 40 H 0.06 0.67 8.06 -2.39 -0.02 0.65 16 41 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.08 1.37 5.97 -2.39 -0.01 1.36 16 43 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 46 H 0.08 0.72 8.13 -2.39 -0.02 0.70 16 47 H 0.02 0.28 8.14 -2.39 -0.02 0.26 16 48 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 49 H 0.09 0.88 8.13 -2.39 -0.02 0.86 16 50 H 0.10 0.85 8.07 -2.39 -0.02 0.83 16 51 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 52 H 0.15 2.09 8.01 -2.91 -0.02 2.06 16 53 H 0.14 3.12 6.41 -2.91 -0.02 3.11 16 Total: -1.00 -68.75 410.51 -2.27 -71.01 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: 0.28 Total: 30.93 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: 6.28 Total: -6.53 kcal Atomic # 7 Polarization: -99.16 SS G_CDS: -10.80 Total: -109.96 kcal Atomic # 8 Polarization: -29.63 SS G_CDS: -0.05 Total: -29.68 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -68.75 -2.27 -71.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183962054.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.194 kcal (2) G-P(sol) polarization free energy of solvation -68.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds