Wall clock time and date at job start Wed Apr 1 2020 04:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47523 * 2 1 4 4 H 1.09002 * 109.46870 * 305.40624 * 3 2 1 5 5 C 1.50697 * 109.47458 * 185.40687 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73730 * 5 3 2 7 7 C 1.37876 * 120.00368 * 64.73652 * 5 3 2 8 8 N 1.31514 * 120.00360 * 187.26421 * 7 5 3 9 9 Si 1.86805 * 119.99758 * 7.25944 * 7 5 3 10 10 H 1.48507 * 109.47037 * 270.00400 * 9 7 5 11 11 H 1.48501 * 109.46943 * 29.99952 * 9 7 5 12 12 H 1.48493 * 109.47092 * 150.00332 * 9 7 5 13 13 N 1.46502 * 109.47201 * 65.40509 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00452 * 13 3 2 15 15 O 1.21551 * 120.00050 * 359.97438 * 14 13 3 16 16 C 1.47847 * 119.99622 * 179.97438 * 14 13 3 17 17 C 1.39575 * 120.14840 * 359.72458 * 16 14 13 18 18 C 1.37951 * 119.85459 * 179.78711 * 17 16 14 19 19 C 1.38361 * 120.14407 * 0.49175 * 18 17 16 20 20 C 1.50699 * 119.85203 * 179.71932 * 19 18 17 21 21 N 1.46896 * 109.47337 * 270.01730 * 20 19 18 22 22 C 1.46952 * 111.00191 * 293.80268 * 21 20 19 23 23 C 1.53052 * 109.36877 * 176.81084 * 22 21 20 24 24 N 1.46948 * 109.36595 * 58.40023 * 23 22 21 25 25 C 1.46896 * 111.00327 * 176.81329 * 24 23 22 26 26 C 1.46965 * 110.87997 * 300.68347 * 24 23 22 27 27 C 1.46958 * 111.00302 * 170.00178 * 21 20 19 28 28 C 1.38358 * 120.29320 * 359.73462 * 19 18 17 29 29 C 1.37952 * 120.14314 * 0.03163 * 28 19 18 30 30 H 1.08999 * 109.47493 * 300.00477 * 1 2 3 31 31 H 1.09005 * 109.47229 * 60.00026 * 1 2 3 32 32 H 1.08995 * 109.47307 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47493 * 239.99523 * 2 1 3 34 34 H 1.09005 * 109.47229 * 119.99974 * 2 1 3 35 35 H 0.96997 * 119.99401 * 354.93876 * 8 7 5 36 36 H 0.96998 * 120.00194 * 94.99918 * 13 3 2 37 37 H 1.08005 * 120.06665 * 359.97438 * 17 16 14 38 38 H 1.08002 * 119.92544 * 180.22437 * 18 17 16 39 39 H 1.09002 * 109.47382 * 30.02004 * 20 19 18 40 40 H 1.09003 * 109.47344 * 150.01540 * 20 19 18 41 41 H 1.08999 * 109.48855 * 296.77833 * 22 21 20 42 42 H 1.09001 * 109.48740 * 56.83730 * 22 21 20 43 43 H 1.09002 * 109.48417 * 298.42915 * 23 22 21 44 44 H 1.09001 * 109.50751 * 178.37940 * 23 22 21 45 45 H 1.09004 * 109.47377 * 183.79636 * 25 24 23 46 46 H 1.08993 * 109.47218 * 303.80075 * 25 24 23 47 47 H 1.09003 * 109.46801 * 63.80013 * 25 24 23 48 48 H 1.09001 * 109.48541 * 299.35511 * 26 24 23 49 49 H 1.08996 * 109.50834 * 179.30101 * 26 24 23 50 50 H 1.09003 * 109.48882 * 303.15459 * 27 21 20 51 51 H 1.09000 * 109.48850 * 63.22233 * 27 21 20 52 52 H 1.07996 * 119.92886 * 180.02562 * 28 19 18 53 53 H 1.08007 * 120.07441 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4445 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1311 0.9701 -1.2861 8 7 5.4381 0.8380 -1.3493 9 14 3.0741 0.5148 -2.7575 10 1 2.6850 -0.9154 -2.6639 11 1 1.8532 1.3600 -2.7704 12 1 3.8437 0.7376 -4.0077 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3380 2.6316 0.4507 16 6 0.0615 3.3187 2.6481 17 6 0.9553 3.3495 3.7197 18 6 0.5935 3.9685 4.8982 19 6 -0.6562 4.5492 5.0229 20 6 -1.0470 5.2182 6.3155 21 7 -1.6846 4.2357 7.2021 22 6 -2.9663 3.7791 6.6470 23 6 -3.5587 2.7012 7.5578 24 7 -3.7390 3.2500 8.9089 25 6 -4.3766 2.2675 9.7956 26 6 -2.4571 3.7066 9.4641 27 6 -1.8648 4.7846 8.5533 28 6 -1.5487 4.5182 3.9661 29 6 -1.1976 3.9065 2.7805 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 5.9924 1.1426 -0.6139 36 1 2.2853 2.1184 1.9978 37 1 1.9292 2.8922 3.6253 38 1 1.2856 3.9961 5.7269 39 1 -0.1573 5.6210 6.7996 40 1 -1.7462 6.0283 6.1084 41 1 -3.6558 4.6210 6.5839 42 1 -2.8048 3.3656 5.6514 43 1 -2.8818 1.8478 7.5991 44 1 -4.5233 2.3813 7.1635 45 1 -4.5594 2.7217 10.7694 46 1 -5.3231 1.9464 9.3610 47 1 -3.7202 1.4054 9.9142 48 1 -1.7676 2.8647 9.5271 49 1 -2.6182 4.1200 10.4597 50 1 -0.9001 5.1040 8.9477 51 1 -2.5418 5.6379 8.5119 52 1 -2.5224 4.9736 4.0697 53 1 -1.8953 3.8826 1.9564 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183962075.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:30 Heat of formation + Delta-G solvation = -23.687897 kcal Electronic energy + Delta-G solvation = -30285.171778 eV Core-core repulsion = 26348.442387 eV Total energy + Delta-G solvation = -3936.729391 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.35577 -40.46223 -39.35815 -37.13543 -36.48468 -34.54661 -33.63611 -32.51846 -32.07047 -31.66735 -29.71712 -28.97657 -26.66515 -24.84736 -24.45312 -24.16938 -23.51798 -23.10079 -21.88264 -21.15132 -20.73184 -20.00402 -18.55858 -17.48649 -17.29118 -16.72439 -16.58908 -16.19081 -16.03538 -15.90054 -15.81062 -15.53059 -15.36723 -15.13036 -15.04724 -14.59775 -14.53547 -14.46687 -14.29688 -14.02554 -13.75363 -13.47452 -13.33389 -13.11817 -12.97908 -12.75376 -12.67764 -12.50807 -12.40670 -12.31111 -12.22836 -11.95146 -11.77536 -11.72986 -11.68810 -11.52606 -11.00963 -10.82436 -10.67876 -9.98461 -9.93349 -9.72401 -9.43254 -9.23619 -8.80536 -6.48900 -0.16007 0.41623 1.39676 1.49531 1.67428 1.89786 2.37491 2.42153 2.76017 2.96762 3.00893 3.14306 3.65116 3.79380 3.88727 3.92302 4.02404 4.09045 4.17027 4.24821 4.26180 4.34670 4.38049 4.40058 4.42039 4.49158 4.54724 4.60933 4.62326 4.67499 4.71000 4.81119 4.84563 4.89244 4.90673 4.99484 5.00625 5.03061 5.05170 5.07397 5.13982 5.25261 5.31436 5.40756 5.50688 5.53887 5.60359 5.63755 5.88406 5.93989 5.95896 5.97898 6.13432 6.14558 6.48944 6.79566 7.24686 7.38236 8.58955 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.020789 B = 0.002075 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.524124 B =13490.708632 C =13789.409769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.134 4.134 3 C 0.246 3.754 4 H 0.026 0.974 5 C -0.605 4.605 6 H 0.041 0.959 7 C -0.010 4.010 8 N -0.933 5.933 9 Si 1.079 2.921 10 H -0.256 1.256 11 H -0.267 1.267 12 H -0.285 1.285 13 N -0.698 5.698 14 C 0.542 3.458 15 O -0.580 6.580 16 C -0.147 4.147 17 C -0.091 4.091 18 C -0.103 4.103 19 C -0.052 4.052 20 C 0.097 3.903 21 N -0.545 5.545 22 C 0.055 3.945 23 C 0.058 3.942 24 N -0.555 5.555 25 C 0.025 3.975 26 C 0.056 3.944 27 C 0.059 3.941 28 C -0.117 4.117 29 C -0.072 4.072 30 H 0.046 0.954 31 H 0.041 0.959 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.258 0.742 36 H 0.401 0.599 37 H 0.130 0.870 38 H 0.150 0.850 39 H 0.102 0.898 40 H 0.056 0.944 41 H 0.044 0.956 42 H 0.078 0.922 43 H 0.029 0.971 44 H 0.085 0.915 45 H 0.078 0.922 46 H 0.072 0.928 47 H 0.023 0.977 48 H 0.033 0.967 49 H 0.093 0.907 50 H 0.095 0.905 51 H 0.043 0.957 52 H 0.146 0.854 53 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.763 7.891 24.733 32.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.173 4.173 3 C 0.141 3.859 4 H 0.043 0.957 5 C -0.643 4.643 6 H 0.059 0.941 7 C -0.209 4.209 8 N -0.568 5.568 9 Si 0.902 3.098 10 H -0.181 1.181 11 H -0.192 1.192 12 H -0.212 1.212 13 N -0.346 5.346 14 C 0.331 3.669 15 O -0.462 6.462 16 C -0.150 4.150 17 C -0.110 4.110 18 C -0.122 4.122 19 C -0.053 4.053 20 C -0.030 4.030 21 N -0.270 5.270 22 C -0.073 4.073 23 C -0.071 4.071 24 N -0.280 5.280 25 C -0.123 4.123 26 C -0.072 4.072 27 C -0.069 4.069 28 C -0.135 4.135 29 C -0.091 4.091 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.236 0.764 37 H 0.148 0.852 38 H 0.167 0.833 39 H 0.120 0.880 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.096 0.904 43 H 0.047 0.953 44 H 0.103 0.897 45 H 0.097 0.903 46 H 0.091 0.909 47 H 0.041 0.959 48 H 0.051 0.949 49 H 0.112 0.888 50 H 0.113 0.887 51 H 0.062 0.938 52 H 0.164 0.836 53 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -19.212 7.217 22.575 30.510 hybrid contribution 0.928 0.448 1.512 1.830 sum -18.284 7.665 24.088 31.198 Atomic orbital electron populations 1.21773 0.95362 1.00597 1.01453 1.22152 0.95571 0.98221 1.01329 1.18958 0.93670 0.89840 0.83448 0.95655 1.22339 0.91377 1.46698 1.03888 0.94085 1.26844 0.97742 0.93606 1.02747 1.70934 1.05288 1.44631 1.35982 0.83557 0.74355 0.78561 0.73327 1.18120 1.19188 1.21167 1.46041 1.15386 1.55930 1.17248 1.18812 0.81763 0.78268 0.88104 1.90691 1.51933 1.61464 1.42121 1.20006 0.97339 1.03882 0.93797 1.21473 0.98823 0.97930 0.92744 1.21159 0.96966 0.97021 0.97016 1.20114 0.93519 0.96517 0.95161 1.21073 1.00272 0.92072 0.89575 1.62135 1.23510 1.38642 1.02673 1.22213 0.89331 0.97659 0.98094 1.22145 1.00158 0.95651 0.89101 1.62223 1.23865 1.39064 1.02861 1.22383 0.98975 0.93492 0.97459 1.22213 0.89089 0.97504 0.98388 1.22207 1.01018 0.95821 0.87834 1.21182 1.00428 0.99929 0.91952 1.21259 0.94521 0.95019 0.98343 0.93474 0.94026 0.92084 0.92781 0.92177 0.93303 0.76369 0.85202 0.83275 0.88008 0.92553 0.93782 0.90390 0.95291 0.89682 0.90277 0.90903 0.95857 0.94916 0.88843 0.88667 0.93844 0.83595 0.85671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.34 8.52 71.98 0.61 -4.73 16 2 C -0.13 -5.93 5.20 30.59 0.16 -5.77 16 3 C 0.25 11.95 1.81 44.24 0.08 12.03 16 4 H 0.03 1.37 6.07 -2.39 -0.01 1.36 16 5 C -0.60 -33.46 9.09 25.60 0.23 -33.22 16 6 H 0.04 2.38 7.95 -2.91 -0.02 2.36 16 7 C -0.01 -0.54 5.42 84.65 0.46 -0.09 16 8 N -0.93 -57.03 13.70 21.45 0.29 -56.74 16 9 Si 1.08 51.59 25.39 68.60 1.74 53.33 16 10 H -0.26 -11.21 6.73 99.48 0.67 -10.54 16 11 H -0.27 -12.41 6.38 99.48 0.63 -11.78 16 12 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 13 N -0.70 -29.02 4.98 -448.97 -2.23 -31.25 16 14 C 0.54 21.56 6.36 86.79 0.55 22.11 16 15 O -0.58 -26.43 13.49 -3.88 -0.05 -26.48 16 16 C -0.15 -4.57 5.87 -20.09 -0.12 -4.69 16 17 C -0.09 -2.32 9.54 22.52 0.21 -2.11 16 18 C -0.10 -2.06 9.68 22.23 0.22 -1.84 16 19 C -0.05 -0.94 4.90 -19.81 -0.10 -1.04 16 20 C 0.10 1.26 5.11 85.56 0.44 1.70 16 21 N -0.54 -7.87 4.70 -900.29 -4.23 -12.10 16 22 C 0.06 0.84 5.25 86.31 0.45 1.29 16 23 C 0.06 0.88 5.62 86.31 0.49 1.36 16 24 N -0.56 -7.73 4.97 -921.95 -4.58 -12.31 16 25 C 0.02 0.27 9.60 127.69 1.23 1.50 16 26 C 0.06 0.68 5.62 86.31 0.49 1.17 16 27 C 0.06 0.67 5.61 86.31 0.48 1.16 16 28 C -0.12 -2.32 7.89 22.23 0.18 -2.14 16 29 C -0.07 -1.95 9.60 22.53 0.22 -1.74 16 30 H 0.05 1.89 5.64 -2.39 -0.01 1.88 16 31 H 0.04 1.73 7.87 -2.38 -0.02 1.71 16 32 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.05 2.44 4.43 -2.39 -0.01 2.43 16 34 H 0.06 2.56 8.14 -2.38 -0.02 2.54 16 35 H 0.26 15.76 8.72 -92.71 -0.81 14.96 16 36 H 0.40 14.95 6.56 -92.71 -0.61 14.34 16 37 H 0.13 3.16 6.41 -2.91 -0.02 3.14 16 38 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 39 H 0.10 1.05 7.97 -2.39 -0.02 1.03 16 40 H 0.06 0.66 8.06 -2.39 -0.02 0.64 16 41 H 0.04 0.65 8.14 -2.39 -0.02 0.64 16 42 H 0.08 1.32 5.94 -2.39 -0.01 1.31 16 43 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.08 1.15 8.13 -2.39 -0.02 1.14 16 45 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 46 H 0.07 0.72 8.13 -2.39 -0.02 0.70 16 47 H 0.02 0.27 8.14 -2.39 -0.02 0.25 16 48 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 49 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 50 H 0.10 0.82 8.07 -2.39 -0.02 0.80 16 51 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 52 H 0.15 2.18 7.99 -2.91 -0.02 2.16 16 53 H 0.13 3.54 7.65 -2.91 -0.02 3.52 16 Total: -1.00 -68.96 405.05 -2.65 -71.60 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: 0.14 Total: 29.01 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: 6.27 Total: -15.06 kcal Atomic # 7 Polarization: -101.65 SS G_CDS: -10.75 Total: -112.40 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.05 Total: -26.48 kcal Atomic # 14 Polarization: 51.59 SS G_CDS: 1.74 Total: 53.33 kcal Total: -68.96 -2.65 -71.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183962075.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.915 kcal (2) G-P(sol) polarization free energy of solvation -68.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds