Wall clock time and date at job start Wed Apr 1 2020 04:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.46899 * 2 1 4 4 N 1.46500 * 109.47478 * 120.00139 * 2 1 3 5 5 C 1.46762 * 124.35458 * 119.99944 * 4 2 1 6 6 C 1.54475 * 105.47605 * 197.03808 * 5 4 2 7 7 H 1.08996 * 111.00143 * 216.45437 * 6 5 4 8 8 N 1.46904 * 110.96987 * 92.70273 * 6 5 4 9 9 C 1.46896 * 111.00150 * 161.16901 * 8 6 5 10 10 C 1.50693 * 109.47242 * 180.02562 * 9 8 6 11 11 C 1.38287 * 119.92563 * 90.00024 * 10 9 8 12 12 C 1.38101 * 120.07837 * 179.97438 * 11 10 9 13 13 C 1.38919 * 119.92050 * 359.97438 * 12 11 10 14 14 N 1.39678 * 120.06932 * 179.97438 * 13 12 11 15 15 C 1.46492 * 120.00377 * 359.97438 * 14 13 12 16 16 C 1.46500 * 119.99410 * 179.97438 * 14 13 12 17 17 C 1.50706 * 109.47299 * 269.99408 * 16 14 13 18 18 H 1.07998 * 119.99503 * 0.02562 * 17 16 14 19 19 C 1.37871 * 120.00434 * 180.02562 * 17 16 14 20 20 N 1.31516 * 119.99826 * 359.72891 * 19 17 16 21 21 Si 1.86800 * 120.00406 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72558 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72681 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72491 * 21 19 17 25 25 C 1.38903 * 119.85218 * 0.25078 * 13 12 11 26 26 C 1.38105 * 119.92643 * 359.49802 * 25 13 12 27 27 C 1.54631 * 101.76569 * 334.58477 * 6 5 4 28 28 C 1.34422 * 124.34569 * 300.02352 * 4 2 1 29 29 O 1.21285 * 124.94220 * 359.61395 * 28 4 2 30 30 H 1.08994 * 109.47201 * 299.99505 * 1 2 3 31 31 H 1.09003 * 109.47522 * 60.00489 * 1 2 3 32 32 H 1.09002 * 109.46810 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47307 * 240.00039 * 2 1 3 34 34 H 1.09008 * 109.47422 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47217 * 299.99581 * 3 2 1 36 36 H 1.08993 * 109.47490 * 59.99980 * 3 2 1 37 37 H 1.09003 * 110.23883 * 78.03549 * 5 4 2 38 38 H 1.08999 * 110.24403 * 316.03888 * 5 4 2 39 39 H 1.00898 * 110.99986 * 285.12196 * 8 6 5 40 40 H 1.08999 * 109.47212 * 59.99517 * 9 8 6 41 41 H 1.09003 * 109.47080 * 300.00065 * 9 8 6 42 42 H 1.08006 * 119.96064 * 359.97438 * 11 10 9 43 43 H 1.07998 * 120.04131 * 179.97438 * 12 11 10 44 44 H 1.09004 * 109.46823 * 270.00079 * 15 14 13 45 45 H 1.09003 * 109.47468 * 30.00123 * 15 14 13 46 46 H 1.08998 * 109.47406 * 150.00191 * 15 14 13 47 47 H 1.09004 * 109.47078 * 150.00170 * 16 14 13 48 48 H 1.08993 * 109.47364 * 29.99941 * 16 14 13 49 49 H 0.97000 * 120.00236 * 0.27947 * 20 19 17 50 50 H 1.08008 * 120.03612 * 179.72824 * 25 13 12 51 51 H 1.07998 * 119.96765 * 180.24902 * 26 25 13 52 52 H 1.08998 * 110.48720 * 143.47499 * 27 6 5 53 53 H 1.08999 * 110.48978 * 265.98871 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.8657 -1.8888 1.1727 6 6 2.7606 -2.4956 2.5894 7 1 3.7133 -2.9219 2.9034 8 7 1.6914 -3.5011 2.6527 9 6 1.8653 -4.3820 3.8152 10 6 0.7530 -5.3982 3.8463 11 6 0.9064 -6.6091 3.1964 12 6 -0.1107 -7.5429 3.2233 13 6 -1.2888 -7.2647 3.9048 14 7 -2.3198 -8.2067 3.9336 15 6 -2.1596 -9.4893 3.2442 16 6 -3.5613 -7.9118 4.6532 17 6 -3.4369 -8.3770 6.0813 18 1 -2.5241 -8.8451 6.4190 19 6 -4.4882 -8.2052 6.9565 20 7 -5.5978 -7.6304 6.5465 21 14 -4.3337 -8.7811 8.7267 22 1 -5.5900 -8.4769 9.4578 23 1 -4.0889 -10.2457 8.7511 24 1 -3.1992 -8.0787 9.3785 25 6 -1.4415 -6.0455 4.5526 26 6 -0.4183 -5.1183 4.5261 27 6 2.4033 -1.2538 3.4387 28 6 1.7477 -0.3085 2.4561 29 8 1.0750 0.6535 2.7610 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9563 0.8899 37 1 3.8983 -1.6162 0.9547 38 1 2.4970 -2.5970 0.4307 39 1 0.7828 -3.0625 2.6641 40 1 1.8406 -3.7875 4.7285 41 1 2.8240 -4.8954 3.7419 42 1 1.8229 -6.8249 2.6671 43 1 0.0096 -8.4882 2.7152 44 1 -2.5179 -9.3978 2.2188 45 1 -1.1062 -9.7691 3.2374 46 1 -2.7356 -10.2553 3.7634 47 1 -4.3914 -8.4304 4.1733 48 1 -3.7451 -6.8376 4.6357 49 1 -5.6781 -7.3310 5.6274 50 1 -2.3580 -5.8244 5.0797 51 1 -0.5348 -4.1718 5.0329 52 1 1.7065 -1.5222 4.2327 53 1 3.3043 -0.8064 3.8582 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265715428.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:48 Heat of formation + Delta-G solvation = -22.868322 kcal Electronic energy + Delta-G solvation = -29994.589810 eV Core-core repulsion = 26057.895959 eV Total energy + Delta-G solvation = -3936.693852 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.63951 -40.50125 -38.28230 -37.46365 -36.69666 -35.13569 -34.21724 -31.90978 -31.40997 -29.72764 -29.33720 -28.30825 -28.14899 -26.80691 -25.45724 -23.79773 -23.41201 -23.09042 -22.12538 -21.16781 -19.85220 -19.12292 -18.22043 -17.69812 -17.32169 -17.01417 -16.66646 -16.06164 -15.84854 -15.72340 -15.53573 -15.40959 -15.26165 -14.91371 -14.68049 -14.58449 -14.45662 -14.35959 -14.12889 -13.78290 -13.63901 -13.36667 -13.28554 -13.22649 -13.07916 -13.05613 -12.82852 -12.64155 -12.60063 -12.49928 -12.33589 -12.24022 -12.11124 -11.98947 -11.86780 -11.50879 -11.30635 -10.64042 -10.63963 -10.37906 -9.71673 -9.67352 -9.37046 -8.79587 -7.93040 -6.47428 0.65880 0.79085 1.48027 1.55369 1.58279 1.75570 2.07966 2.43750 2.54741 2.93513 3.07043 3.34543 3.41720 3.65840 3.88546 3.99730 4.04658 4.10187 4.12190 4.19007 4.26701 4.30914 4.36405 4.49162 4.55476 4.63604 4.65017 4.67664 4.68430 4.70394 4.75455 4.77766 4.80362 4.84375 4.86715 4.87881 4.93829 4.97711 5.02883 5.05959 5.21493 5.26439 5.27286 5.55485 5.61134 5.72797 5.81216 5.87494 5.97851 6.08807 6.20592 6.21159 6.32013 6.40725 6.60631 6.83555 7.20863 7.32327 8.63553 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.014415 B = 0.002091 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.016509 B =13386.424900 C =13839.702560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.148 3.852 3 C -0.161 4.161 4 N -0.611 5.611 5 C 0.108 3.892 6 C 0.084 3.916 7 H 0.138 0.862 8 N -0.674 5.674 9 C 0.119 3.881 10 C -0.156 4.156 11 C -0.043 4.043 12 C -0.216 4.216 13 C 0.209 3.791 14 N -0.630 5.630 15 C 0.099 3.901 16 C 0.254 3.746 17 C -0.614 4.614 18 H 0.042 0.958 19 C -0.030 4.030 20 N -0.932 5.932 21 Si 1.116 2.884 22 H -0.280 1.280 23 H -0.268 1.268 24 H -0.275 1.275 25 C -0.220 4.220 26 C -0.071 4.071 27 C -0.186 4.186 28 C 0.505 3.495 29 O -0.583 6.583 30 H 0.037 0.963 31 H 0.082 0.918 32 H 0.053 0.947 33 H 0.117 0.883 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.038 0.962 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.334 0.666 40 H 0.038 0.962 41 H 0.102 0.898 42 H 0.151 0.849 43 H 0.134 0.866 44 H 0.053 0.947 45 H 0.082 0.918 46 H 0.053 0.947 47 H 0.003 0.997 48 H 0.002 0.998 49 H 0.255 0.745 50 H 0.085 0.915 51 H 0.117 0.883 52 H 0.088 0.912 53 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.117 10.137 -14.699 30.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.046 3.954 3 C -0.219 4.219 4 N -0.345 5.345 5 C -0.014 4.014 6 C -0.026 4.026 7 H 0.156 0.844 8 N -0.303 5.303 9 C -0.009 4.009 10 C -0.159 4.159 11 C -0.062 4.062 12 C -0.239 4.239 13 C 0.104 3.896 14 N -0.338 5.338 15 C -0.044 4.044 16 C 0.132 3.868 17 C -0.653 4.653 18 H 0.061 0.939 19 C -0.229 4.229 20 N -0.569 5.569 21 Si 0.937 3.063 22 H -0.206 1.206 23 H -0.193 1.193 24 H -0.200 1.200 25 C -0.243 4.243 26 C -0.090 4.090 27 C -0.228 4.228 28 C 0.294 3.706 29 O -0.464 6.464 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.072 0.928 33 H 0.134 0.866 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.057 0.943 37 H 0.122 0.878 38 H 0.113 0.887 39 H 0.152 0.848 40 H 0.056 0.944 41 H 0.120 0.880 42 H 0.168 0.832 43 H 0.151 0.849 44 H 0.071 0.929 45 H 0.101 0.899 46 H 0.072 0.928 47 H 0.021 0.979 48 H 0.020 0.980 49 H 0.065 0.935 50 H 0.103 0.897 51 H 0.135 0.865 52 H 0.107 0.893 53 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 23.098 9.958 -13.659 28.623 hybrid contribution -0.742 0.841 -0.429 1.201 sum 22.356 10.799 -14.088 28.546 Atomic orbital electron populations 1.22144 0.95823 1.01955 1.02394 1.21088 0.93684 0.93401 0.87258 1.22116 1.01552 0.95752 1.02457 1.48616 1.50620 1.29707 1.05528 1.22465 0.95642 0.85103 0.98221 1.22703 0.97510 0.88858 0.93567 0.84438 1.60656 1.05512 1.21364 1.42814 1.20711 0.96805 0.92124 0.91229 1.19575 0.96044 0.97188 1.03071 1.20951 0.97893 0.91729 0.95609 1.20857 0.93422 1.02478 1.07150 1.18258 0.88738 0.88898 0.93660 1.46756 1.15244 1.16197 1.55615 1.21604 1.02537 0.84427 0.95820 1.18869 0.82334 0.94445 0.91199 1.22597 1.02545 1.43050 0.97071 0.93926 1.27296 0.91867 0.94329 1.09361 1.70941 1.28118 1.38776 1.19023 0.82948 0.76308 0.76923 0.70149 1.20567 1.19315 1.20031 1.20691 1.00821 0.95688 1.07085 1.20834 0.92801 0.97622 0.97730 1.23164 1.03481 0.97793 0.98369 1.21347 0.79354 0.84713 0.85190 1.90675 1.41919 1.31318 1.82495 0.94390 0.89871 0.92809 0.86555 0.91636 0.89951 0.94293 0.87847 0.88684 0.84833 0.94367 0.87953 0.83168 0.84870 0.92881 0.89929 0.92793 0.97948 0.97968 0.93523 0.89653 0.86538 0.89343 0.85577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 9.20 71.98 0.66 -2.31 16 2 C 0.15 2.11 3.47 44.99 0.16 2.26 16 3 C -0.16 -2.34 9.20 71.98 0.66 -1.68 16 4 N -0.61 -9.40 2.83 -794.04 -2.25 -11.65 16 5 C 0.11 0.95 7.03 86.83 0.61 1.56 16 6 C 0.08 0.83 3.43 45.97 0.16 0.98 16 7 H 0.14 0.62 7.92 -2.39 -0.02 0.60 16 8 N -0.67 -10.41 6.29 -490.14 -3.08 -13.50 16 9 C 0.12 2.03 5.66 85.56 0.48 2.51 16 10 C -0.16 -4.04 5.39 -19.84 -0.11 -4.15 16 11 C -0.04 -1.10 9.69 22.25 0.22 -0.88 16 12 C -0.22 -6.86 9.21 22.40 0.21 -6.65 16 13 C 0.21 8.51 6.55 38.21 0.25 8.76 16 14 N -0.63 -27.90 2.99 -726.56 -2.17 -30.08 16 15 C 0.10 3.45 10.19 127.77 1.30 4.75 16 16 C 0.25 13.50 4.23 85.64 0.36 13.86 16 17 C -0.61 -35.26 9.39 25.60 0.24 -35.02 16 18 H 0.04 2.49 7.81 -2.91 -0.02 2.46 16 19 C -0.03 -1.74 5.46 84.65 0.46 -1.28 16 20 N -0.93 -57.31 13.65 21.45 0.29 -57.02 16 21 Si 1.12 50.85 29.90 68.60 2.05 52.91 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 25 C -0.22 -9.28 9.21 22.40 0.21 -9.08 16 26 C -0.07 -2.34 9.69 22.25 0.22 -2.12 16 27 C -0.19 -2.64 6.31 30.59 0.19 -2.44 16 28 C 0.50 10.83 7.41 87.90 0.65 11.48 16 29 O -0.58 -18.19 15.12 -3.05 -0.05 -18.24 16 30 H 0.04 0.94 6.79 -2.39 -0.02 0.92 16 31 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.12 1.02 8.07 -2.38 -0.02 1.00 16 34 H 0.06 0.80 8.14 -2.38 -0.02 0.79 16 35 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.04 0.84 6.78 -2.39 -0.02 0.82 16 37 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.09 0.85 8.09 -2.39 -0.02 0.83 16 39 H 0.33 6.72 8.52 -89.70 -0.76 5.96 16 40 H 0.04 0.65 7.79 -2.39 -0.02 0.63 16 41 H 0.10 1.29 8.03 -2.39 -0.02 1.27 16 42 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 43 H 0.13 3.63 6.14 -2.91 -0.02 3.61 16 44 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 45 H 0.08 2.40 6.20 -2.39 -0.01 2.39 16 46 H 0.05 1.98 8.07 -2.39 -0.02 1.96 16 47 H 0.00 0.14 7.94 -2.39 -0.02 0.12 16 48 H 0.00 0.14 6.05 -2.39 -0.01 0.13 16 49 H 0.26 15.87 7.22 -92.71 -0.67 15.20 16 50 H 0.09 4.24 6.14 -2.91 -0.02 4.22 16 51 H 0.12 3.53 8.06 -2.91 -0.02 3.51 16 52 H 0.09 1.51 7.78 -2.39 -0.02 1.49 16 53 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -75.82 421.26 1.96 -73.87 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.23 Total: 23.14 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: 6.93 Total: -19.43 kcal Atomic # 7 Polarization: -105.03 SS G_CDS: -7.21 Total: -112.24 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.05 Total: -18.24 kcal Atomic # 14 Polarization: 50.85 SS G_CDS: 2.05 Total: 52.91 kcal Total: -75.82 1.96 -73.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265715428.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.997 kcal (2) G-P(sol) polarization free energy of solvation -75.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds