Wall clock time and date at job start Wed Apr 1 2020 03:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.46835 * 2 1 4 4 C 1.52998 * 109.47141 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47447 * 179.97438 * 4 3 2 6 6 C 1.46499 * 120.00461 * 269.99741 * 5 4 3 7 7 C 1.39051 * 120.00208 * 89.99961 * 5 4 3 8 8 C 1.39222 * 119.93402 * 179.97438 * 7 5 4 9 9 C 1.37614 * 120.06877 * 179.97438 * 8 7 5 10 10 C 1.39799 * 119.92884 * 0.02562 * 9 8 7 11 11 C 1.47520 * 120.06572 * 180.02562 * 10 9 8 12 12 O 1.21598 * 120.00172 * 33.95051 * 11 10 9 13 13 N 1.34779 * 119.99710 * 213.95298 * 11 10 9 14 14 C 1.46961 * 120.59684 * 4.98344 * 13 11 10 15 15 C 1.53806 * 108.39912 * 124.75599 * 14 13 11 16 16 N 1.46962 * 108.57882 * 49.63923 * 15 14 13 17 17 C 1.36942 * 120.59680 * 124.62336 * 16 15 14 18 18 H 1.07997 * 120.00472 * 211.00837 * 17 16 15 19 19 C 1.38815 * 119.99809 * 31.00652 * 17 16 15 20 20 N 1.31620 * 120.00195 * 215.00453 * 19 17 16 21 21 Si 1.86807 * 120.00053 * 35.00508 * 19 17 16 22 22 H 1.48500 * 109.46695 * 93.06817 * 21 19 17 23 23 H 1.48491 * 109.47085 * 213.07096 * 21 19 17 24 24 H 1.48496 * 109.46991 * 333.07313 * 21 19 17 25 25 C 1.46965 * 118.81245 * 304.64509 * 16 15 14 26 26 C 1.46972 * 120.59214 * 185.26230 * 13 11 10 27 27 C 1.39796 * 119.86490 * 359.97438 * 10 9 8 28 28 C 1.37610 * 119.92982 * 0.02562 * 27 10 9 29 29 H 1.08999 * 109.47144 * 300.00031 * 1 2 3 30 30 H 1.08995 * 109.47565 * 59.99884 * 1 2 3 31 31 H 1.09003 * 109.47077 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46669 * 239.99828 * 2 1 3 33 33 H 1.08994 * 109.47045 * 120.00174 * 2 1 3 34 34 H 1.08999 * 109.47280 * 60.00053 * 3 2 1 35 35 H 1.09008 * 109.47295 * 299.99716 * 3 2 1 36 36 H 1.08999 * 109.47159 * 59.99772 * 4 3 2 37 37 H 1.09004 * 109.47220 * 300.00357 * 4 3 2 38 38 H 1.08996 * 109.47734 * 270.00579 * 6 5 4 39 39 H 1.09008 * 109.46642 * 30.00110 * 6 5 4 40 40 H 1.09000 * 109.47302 * 149.99873 * 6 5 4 41 41 H 1.07994 * 119.96299 * 359.97438 * 8 7 5 42 42 H 1.07995 * 120.03281 * 179.72995 * 9 8 7 43 43 H 1.08997 * 109.60652 * 244.54240 * 14 13 11 44 44 H 1.09005 * 109.61028 * 5.05108 * 14 13 11 45 45 H 1.08999 * 109.74635 * 289.84812 * 15 14 13 46 46 H 1.09009 * 109.67682 * 169.38667 * 15 14 13 47 47 H 0.96996 * 120.00232 * 180.02562 * 20 19 17 48 48 H 1.09001 * 109.60909 * 295.48456 * 25 16 15 49 49 H 1.08998 * 109.74980 * 175.05695 * 25 16 15 50 50 H 1.08998 * 109.60899 * 354.94324 * 26 13 11 51 51 H 1.08997 * 109.61011 * 115.28640 * 26 13 11 52 52 H 1.07994 * 120.03217 * 180.02562 * 27 10 9 53 53 H 1.07997 * 119.96283 * 180.02562 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8237 -0.0013 6 6 4.3019 3.5140 -1.2702 7 6 4.2905 3.4796 1.2026 8 6 4.7551 4.7920 1.2004 9 6 4.9854 5.4439 2.3902 10 6 4.7528 4.7868 3.6020 11 6 4.9981 5.4830 4.8793 12 8 4.7967 6.6788 4.9684 13 7 5.4456 4.7935 5.9474 14 6 5.7972 3.3717 5.8262 15 6 7.2433 3.1857 6.3158 16 7 7.3827 3.8407 7.6240 17 6 7.8364 3.1400 8.7095 18 1 7.4939 3.3982 9.7007 19 6 8.7367 2.0977 8.5359 20 7 8.6735 1.0372 9.3129 21 14 10.0380 2.2003 7.1996 22 1 11.2869 2.7685 7.7675 23 1 10.3096 0.8407 6.6679 24 1 9.5517 3.0733 6.1012 25 6 7.0258 5.2611 7.7465 26 6 5.5850 5.4485 7.2557 27 6 4.2863 3.4689 3.6009 28 6 4.0579 2.8225 2.4078 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9563 -0.8901 36 1 3.9329 0.9288 -0.8908 37 1 3.9337 0.9285 0.8891 38 1 5.3312 3.3426 -1.5853 39 1 3.6208 3.1296 -2.0295 40 1 4.1350 4.5833 -1.1401 41 1 4.9349 5.2989 0.2639 42 1 5.3499 6.4605 2.3878 43 1 5.1213 2.7743 6.4381 44 1 5.7198 3.0633 4.7836 45 1 7.9340 3.6386 5.6045 46 1 7.4639 2.1227 6.4136 47 1 9.3028 0.3091 9.1919 48 1 7.7010 5.8618 7.1370 49 1 7.1004 5.5710 8.7888 50 1 5.3675 6.5120 7.1573 51 1 4.8922 4.9976 7.9662 52 1 4.1054 2.9589 4.5354 53 1 3.6972 1.8045 2.4063 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265729015.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:23 Heat of formation + Delta-G solvation = 22.233314 kcal Electronic energy + Delta-G solvation = -30766.334134 eV Core-core repulsion = 26831.596036 eV Total energy + Delta-G solvation = -3934.738098 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.57490 -40.24899 -38.57096 -37.63303 -35.73811 -35.38901 -33.63124 -32.57708 -32.03266 -31.11689 -30.00344 -28.88001 -27.11808 -25.64234 -24.98370 -24.56795 -23.09995 -22.82720 -22.03649 -21.47441 -20.50413 -19.08357 -18.24120 -17.89000 -17.32469 -16.86184 -16.65280 -16.23436 -16.11588 -15.98979 -15.76882 -15.59883 -15.33573 -15.06342 -14.87304 -14.61303 -14.48130 -14.32480 -14.14832 -14.04565 -13.71892 -13.49053 -13.44659 -13.27527 -13.18137 -12.88732 -12.73495 -12.51787 -12.29371 -12.27373 -12.17685 -12.05800 -11.93821 -11.87542 -11.59758 -11.45904 -11.41534 -10.93928 -10.65821 -10.64320 -9.91183 -9.84435 -8.82439 -8.25301 -8.23574 -5.45089 0.15425 0.47590 1.35271 1.45948 1.53831 1.81423 2.04958 2.14853 2.44718 2.88148 2.97605 3.38233 3.61094 3.79330 3.89537 3.99924 4.04871 4.12334 4.15758 4.23160 4.31625 4.33223 4.39232 4.40594 4.44376 4.53041 4.56743 4.62054 4.66128 4.68346 4.70082 4.77418 4.82521 4.86227 4.87685 4.93480 4.96923 4.98907 5.08606 5.10399 5.16329 5.24078 5.29262 5.33208 5.38381 5.46075 5.50052 5.60823 5.76688 5.87166 6.12629 6.30865 6.45844 6.48865 6.90420 7.16834 7.60530 8.06232 8.94208 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.011171 B = 0.002770 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.946864 B =10105.905143 C =11065.829040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.132 4.132 4 C 0.115 3.885 5 N -0.624 5.624 6 C 0.083 3.917 7 C 0.241 3.759 8 C -0.209 4.209 9 C -0.023 4.023 10 C -0.217 4.217 11 C 0.559 3.441 12 O -0.592 6.592 13 N -0.600 5.600 14 C 0.086 3.914 15 C 0.127 3.873 16 N -0.612 5.612 17 C -0.265 4.265 18 H 0.050 0.950 19 C -0.005 4.005 20 N -0.926 5.926 21 Si 0.898 3.102 22 H -0.302 1.302 23 H -0.291 1.291 24 H -0.241 1.241 25 C 0.132 3.868 26 C 0.104 3.896 27 C -0.042 4.042 28 C -0.207 4.207 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.057 0.943 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.148 0.852 42 H 0.122 0.878 43 H 0.076 0.924 44 H 0.118 0.882 45 H 0.029 0.971 46 H 0.064 0.936 47 H 0.264 0.736 48 H 0.025 0.975 49 H 0.076 0.924 50 H 0.089 0.911 51 H 0.070 0.930 52 H 0.140 0.860 53 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.226 -0.740 -26.119 29.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.170 4.170 4 C -0.008 4.008 5 N -0.331 5.331 6 C -0.059 4.059 7 C 0.135 3.865 8 C -0.231 4.231 9 C -0.043 4.043 10 C -0.222 4.222 11 C 0.351 3.649 12 O -0.474 6.474 13 N -0.330 5.330 14 C -0.038 4.038 15 C 0.001 3.999 16 N -0.336 5.336 17 C -0.393 4.393 18 H 0.068 0.932 19 C -0.203 4.203 20 N -0.569 5.569 21 Si 0.725 3.275 22 H -0.230 1.230 23 H -0.218 1.218 24 H -0.165 1.165 25 C 0.006 3.994 26 C -0.020 4.020 27 C -0.062 4.062 28 C -0.229 4.229 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.075 0.925 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.165 0.835 42 H 0.140 0.860 43 H 0.095 0.905 44 H 0.136 0.864 45 H 0.047 0.953 46 H 0.083 0.917 47 H 0.073 0.927 48 H 0.043 0.957 49 H 0.095 0.905 50 H 0.107 0.893 51 H 0.088 0.912 52 H 0.158 0.842 53 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.290 -0.385 -26.206 29.852 hybrid contribution 1.089 0.012 0.293 1.128 sum -13.201 -0.374 -25.913 29.085 Atomic orbital electron populations 1.21773 0.95904 1.01872 1.01616 1.21450 0.95932 0.95813 1.02690 1.21983 0.95447 0.97512 1.02106 1.21699 0.93825 0.81286 1.03941 1.46652 1.69410 1.13897 1.03132 1.21870 1.01665 0.98104 0.84285 1.18114 0.90483 0.91159 0.86696 1.20747 1.09548 0.94387 0.98456 1.20936 0.93790 0.98762 0.90776 1.19514 1.13571 0.96734 0.92360 1.18751 0.75859 0.86064 0.84182 1.90681 1.55658 1.16159 1.84945 1.47962 1.63749 1.11885 1.09448 1.22992 0.96936 0.80538 1.03314 1.21841 0.94533 0.97084 0.86407 1.44389 1.75909 1.06469 1.06827 1.18670 1.20872 1.12015 0.87780 0.93184 1.25779 0.99819 0.95621 0.99107 1.70148 1.36918 1.05750 1.44054 0.86582 0.81729 0.77333 0.81850 1.22991 1.21793 1.16506 1.21428 0.93241 0.84602 1.00126 1.22028 0.97950 0.98519 0.83457 1.21364 0.93683 0.91965 0.99146 1.20793 1.10057 1.01833 0.90246 0.93387 0.92670 0.92283 0.90943 0.91731 0.92959 0.91749 0.88906 0.90312 0.92479 0.89677 0.90867 0.83480 0.86013 0.90536 0.86425 0.95276 0.91731 0.92676 0.95715 0.90517 0.89271 0.91152 0.84240 0.83581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 71.98 0.71 -0.75 16 2 C -0.12 -1.03 5.93 30.59 0.18 -0.85 16 3 C -0.13 -1.31 5.54 30.59 0.17 -1.15 16 4 C 0.11 1.15 5.14 86.38 0.44 1.60 16 5 N -0.62 -8.35 2.99 -722.21 -2.16 -10.51 16 6 C 0.08 0.73 10.17 127.77 1.30 2.03 16 7 C 0.24 4.56 6.55 38.47 0.25 4.81 16 8 C -0.21 -4.27 9.18 22.36 0.21 -4.06 16 9 C -0.02 -0.60 9.59 22.50 0.22 -0.38 16 10 C -0.22 -6.38 5.37 -20.08 -0.11 -6.49 16 11 C 0.56 20.09 7.39 86.69 0.64 20.73 16 12 O -0.59 -24.63 16.21 -4.02 -0.07 -24.69 16 13 N -0.60 -21.31 2.94 -820.93 -2.41 -23.73 16 14 C 0.09 2.87 4.97 86.56 0.43 3.30 16 15 C 0.13 5.29 4.58 86.56 0.40 5.69 16 16 N -0.61 -28.62 2.63 -697.36 -1.84 -30.45 16 17 C -0.26 -14.58 9.82 84.03 0.83 -13.76 16 18 H 0.05 3.01 8.06 -2.91 -0.02 2.99 16 19 C 0.00 -0.27 4.82 84.86 0.41 0.14 16 20 N -0.93 -55.73 13.97 21.65 0.30 -55.42 16 21 Si 0.90 43.70 26.66 68.60 1.83 45.52 16 22 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 23 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 24 H -0.24 -11.02 4.92 99.48 0.49 -10.53 16 25 C 0.13 5.33 6.67 86.41 0.58 5.91 16 26 C 0.10 3.77 6.60 86.41 0.57 4.34 16 27 C -0.04 -1.03 7.33 22.50 0.16 -0.87 16 28 C -0.21 -4.14 9.18 22.36 0.21 -3.93 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 36 H 0.09 0.64 8.07 -2.39 -0.02 0.62 16 37 H 0.08 0.84 6.17 -2.38 -0.01 0.83 16 38 H 0.06 0.46 8.14 -2.39 -0.02 0.45 16 39 H 0.08 0.45 8.07 -2.38 -0.02 0.44 16 40 H 0.07 0.63 6.17 -2.39 -0.01 0.61 16 41 H 0.15 2.26 6.11 -2.91 -0.02 2.25 16 42 H 0.12 3.26 7.98 -2.91 -0.02 3.23 16 43 H 0.08 2.52 8.09 -2.39 -0.02 2.50 16 44 H 0.12 3.36 4.18 -2.38 -0.01 3.35 16 45 H 0.03 1.24 6.68 -2.39 -0.02 1.23 16 46 H 0.06 2.84 5.95 -2.38 -0.01 2.82 16 47 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 48 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.08 3.01 7.94 -2.39 -0.02 3.00 16 50 H 0.09 3.17 6.99 -2.39 -0.02 3.15 16 51 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 52 H 0.14 3.23 5.85 -2.91 -0.02 3.21 16 53 H 0.15 2.30 6.11 -2.91 -0.02 2.28 16 Total: -1.00 -70.64 405.46 3.92 -66.72 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.68 Total: 16.25 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 7.59 Total: 16.31 kcal Atomic # 7 Polarization: -114.00 SS G_CDS: -6.11 Total: -120.11 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.07 Total: -24.69 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.83 Total: 45.52 kcal Total: -70.64 3.92 -66.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265729015.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.951 kcal (2) G-P(sol) polarization free energy of solvation -70.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds