Wall clock time and date at job start Wed Apr 1 2020 04:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.47140 * 2 1 4 4 N 1.46495 * 109.47028 * 180.02562 * 3 2 1 5 5 C 1.46499 * 120.00188 * 89.99877 * 4 3 2 6 6 C 1.52998 * 109.46800 * 90.00079 * 5 4 3 7 7 C 1.39056 * 120.00026 * 270.00037 * 4 3 2 8 8 C 1.39222 * 119.92704 * 359.72284 * 7 4 3 9 9 C 1.37608 * 120.06328 * 179.76672 * 8 7 4 10 10 C 1.39792 * 119.93283 * 0.48895 * 9 8 7 11 11 C 1.47523 * 120.06814 * 179.78804 * 10 9 8 12 12 O 1.21604 * 119.99917 * 213.93677 * 11 10 9 13 13 N 1.34774 * 120.00093 * 33.94320 * 11 10 9 14 14 C 1.46962 * 120.59510 * 4.98557 * 13 11 10 15 15 C 1.53808 * 108.40181 * 124.76144 * 14 13 11 16 16 N 1.46964 * 108.57965 * 49.63403 * 15 14 13 17 17 C 1.36938 * 120.59502 * 124.62957 * 16 15 14 18 18 H 1.07998 * 120.00092 * 211.01295 * 17 16 15 19 19 C 1.38811 * 119.99726 * 31.00555 * 17 16 15 20 20 N 1.31625 * 120.00057 * 215.01054 * 19 17 16 21 21 Si 1.86799 * 119.99995 * 35.01308 * 19 17 16 22 22 H 1.48505 * 109.47009 * 93.08414 * 21 19 17 23 23 H 1.48502 * 109.47174 * 213.08144 * 21 19 17 24 24 H 1.48491 * 109.47189 * 333.08472 * 21 19 17 25 25 C 1.46966 * 118.81204 * 304.65151 * 16 15 14 26 26 C 1.46970 * 120.59508 * 185.26646 * 13 11 10 27 27 C 1.39792 * 119.86129 * 359.76541 * 10 9 8 28 28 C 1.37606 * 119.93334 * 359.97438 * 27 10 9 29 29 H 1.09002 * 109.47058 * 300.00007 * 1 2 3 30 30 H 1.08999 * 109.46890 * 59.99766 * 1 2 3 31 31 H 1.08997 * 109.47187 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47058 * 239.99993 * 2 1 3 33 33 H 1.09004 * 109.47242 * 119.99903 * 2 1 3 34 34 H 1.08999 * 109.46847 * 59.99631 * 3 2 1 35 35 H 1.08997 * 109.46696 * 299.99791 * 3 2 1 36 36 H 1.08997 * 109.46853 * 329.99987 * 5 4 3 37 37 H 1.08999 * 109.47289 * 209.99898 * 5 4 3 38 38 H 1.09008 * 109.46926 * 180.02562 * 6 5 4 39 39 H 1.08999 * 109.47052 * 299.99965 * 6 5 4 40 40 H 1.08997 * 109.47493 * 60.00300 * 6 5 4 41 41 H 1.07999 * 119.96634 * 0.02562 * 8 7 4 42 42 H 1.08000 * 120.03578 * 180.25784 * 9 8 7 43 43 H 1.09005 * 109.61145 * 244.54255 * 14 13 11 44 44 H 1.09003 * 109.60999 * 5.05002 * 14 13 11 45 45 H 1.09007 * 109.73795 * 289.85254 * 15 14 13 46 46 H 1.08997 * 109.67840 * 169.39050 * 15 14 13 47 47 H 0.96998 * 119.99717 * 180.02562 * 20 19 17 48 48 H 1.08997 * 109.61067 * 295.47694 * 25 16 15 49 49 H 1.09004 * 109.74833 * 175.04966 * 25 16 15 50 50 H 1.09000 * 109.60846 * 354.94507 * 26 13 11 51 51 H 1.09000 * 109.61218 * 115.28403 * 26 13 11 52 52 H 1.08012 * 120.03506 * 180.02562 * 27 10 9 53 53 H 1.07998 * 119.96781 * 179.97438 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.2370 1.4427 -1.2696 6 6 4.4918 2.8853 -1.7111 7 6 4.2008 1.4424 1.2033 8 6 3.5037 1.4480 2.4084 9 6 4.1893 1.4430 3.6015 10 6 5.5873 1.4425 3.6026 11 6 6.3254 1.4418 4.8799 12 8 7.3863 2.0294 4.9694 13 7 5.8240 0.7900 5.9477 14 6 4.6000 -0.0143 5.8260 15 6 4.9055 -1.4403 6.3148 16 7 5.5695 -1.3546 7.6231 17 6 5.0596 -2.0162 8.7082 18 1 5.1891 -1.6078 9.6996 19 6 4.3760 -3.2117 8.5339 20 7 3.3548 -3.5052 9.3107 21 14 4.9056 -4.4041 7.1970 22 1 5.8565 -5.3936 7.7645 23 1 3.7137 -5.1120 6.6645 24 1 5.5677 -3.6547 6.0993 25 6 6.7904 -0.5458 7.7461 26 6 6.4880 0.8756 7.2560 27 6 6.2843 1.4422 2.3909 28 6 5.5929 1.4418 1.2011 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.6476 0.9290 -2.0290 37 1 5.1894 0.9289 -1.1398 38 1 5.0361 2.8854 -2.6556 39 1 3.5394 3.3991 -1.8410 40 1 5.0812 3.3990 -0.9517 41 1 2.4237 1.4521 2.4069 42 1 3.6481 1.4432 4.5361 43 1 3.8118 0.4241 6.4381 44 1 4.2834 -0.0433 4.7833 45 1 5.5624 -1.9406 5.6033 46 1 3.9763 -2.0019 6.4122 47 1 2.8774 -4.3408 9.1890 48 1 7.5815 -0.9824 7.1365 49 1 7.1074 -0.5136 8.7885 50 1 7.4186 1.4345 7.1580 51 1 5.8324 1.3787 7.9668 52 1 7.3644 1.4414 2.3885 53 1 6.1308 1.4420 0.2646 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265778655.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:32 Heat of formation + Delta-G solvation = 24.128398 kcal Electronic energy + Delta-G solvation = -31115.809813 eV Core-core repulsion = 27181.153892 eV Total energy + Delta-G solvation = -3934.655921 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.58670 -40.33533 -38.58393 -37.66615 -35.67133 -34.71785 -33.64342 -32.65379 -32.36048 -31.41275 -30.07977 -28.80163 -26.92093 -25.60960 -24.93948 -24.46678 -23.48959 -22.67919 -22.34492 -21.21129 -20.50146 -19.09982 -18.28379 -17.90073 -17.35878 -16.95137 -16.65993 -16.25017 -16.03801 -15.98838 -15.54612 -15.41191 -15.27389 -15.12487 -14.88878 -14.68536 -14.53082 -14.23675 -14.08282 -14.04614 -13.83180 -13.47743 -13.35918 -13.25578 -12.95515 -12.75982 -12.70514 -12.63221 -12.51578 -12.29325 -12.18135 -12.14527 -11.95639 -11.87197 -11.62986 -11.46367 -11.46205 -10.94414 -10.66164 -10.64841 -9.90883 -9.84347 -8.82771 -8.25503 -8.23702 -5.45432 0.16226 0.48145 1.34696 1.45372 1.53224 1.81528 2.04717 2.12906 2.44290 2.88445 2.97529 3.37923 3.61219 3.78944 3.88348 4.02818 4.10389 4.11866 4.15019 4.19721 4.32713 4.39018 4.39870 4.42795 4.43749 4.47617 4.51590 4.58212 4.61960 4.66263 4.72139 4.76564 4.77106 4.86017 4.93685 4.94131 4.97206 4.98767 5.09245 5.16059 5.22271 5.24732 5.27695 5.32296 5.37956 5.45529 5.48156 5.61177 5.77951 5.86843 6.12323 6.34036 6.46546 6.50557 6.90063 7.16992 7.60182 8.05912 8.93800 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.011162 B = 0.003131 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.984487 B = 8940.013472 C =10626.088721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.140 4.140 3 C 0.117 3.883 4 N -0.617 5.617 5 C 0.110 3.890 6 C -0.167 4.167 7 C 0.245 3.755 8 C -0.208 4.208 9 C -0.042 4.042 10 C -0.217 4.217 11 C 0.559 3.441 12 O -0.592 6.592 13 N -0.599 5.599 14 C 0.086 3.914 15 C 0.128 3.872 16 N -0.612 5.612 17 C -0.265 4.265 18 H 0.051 0.949 19 C -0.005 4.005 20 N -0.926 5.926 21 Si 0.898 3.102 22 H -0.301 1.301 23 H -0.292 1.292 24 H -0.242 1.242 25 C 0.132 3.868 26 C 0.105 3.895 27 C -0.023 4.023 28 C -0.208 4.208 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.057 0.943 40 H 0.045 0.955 41 H 0.147 0.853 42 H 0.140 0.860 43 H 0.076 0.924 44 H 0.118 0.882 45 H 0.029 0.971 46 H 0.064 0.936 47 H 0.264 0.736 48 H 0.025 0.975 49 H 0.077 0.923 50 H 0.089 0.911 51 H 0.070 0.930 52 H 0.121 0.879 53 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.419 11.896 -26.572 29.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.179 4.179 3 C -0.005 4.005 4 N -0.324 5.324 5 C -0.012 4.012 6 C -0.226 4.226 7 C 0.139 3.861 8 C -0.230 4.230 9 C -0.062 4.062 10 C -0.222 4.222 11 C 0.351 3.649 12 O -0.475 6.475 13 N -0.330 5.330 14 C -0.038 4.038 15 C 0.002 3.998 16 N -0.336 5.336 17 C -0.393 4.393 18 H 0.069 0.931 19 C -0.203 4.203 20 N -0.568 5.568 21 Si 0.725 3.275 22 H -0.229 1.229 23 H -0.218 1.218 24 H -0.166 1.166 25 C 0.006 3.994 26 C -0.019 4.019 27 C -0.043 4.043 28 C -0.230 4.230 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.164 0.836 42 H 0.157 0.843 43 H 0.095 0.905 44 H 0.136 0.864 45 H 0.047 0.953 46 H 0.082 0.918 47 H 0.073 0.927 48 H 0.043 0.957 49 H 0.095 0.905 50 H 0.107 0.893 51 H 0.088 0.912 52 H 0.139 0.861 53 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.111 12.091 -26.650 29.552 hybrid contribution 0.369 -1.161 0.324 1.260 sum -3.742 10.930 -26.327 28.750 Atomic orbital electron populations 1.21692 0.94397 1.02111 1.02493 1.21921 0.96663 0.97230 1.02038 1.21688 0.78179 0.96791 1.03866 1.46808 1.05525 1.77292 1.02774 1.21624 0.97617 0.97543 0.84441 1.22173 1.02091 0.96606 1.01704 1.18090 0.91200 0.90135 0.86682 1.20796 1.00708 1.11224 0.90239 1.21364 0.92143 0.93504 0.99152 1.19502 0.94452 1.15894 0.92330 1.18757 0.84317 0.77600 0.84187 1.90682 1.24372 1.47472 1.84938 1.47956 1.27606 1.48007 1.09464 1.22993 0.86038 0.91444 1.03305 1.21833 0.96413 0.95166 0.86400 1.44390 1.26358 1.56007 1.06843 1.18674 1.31009 1.01869 0.87796 0.93150 1.25774 0.96691 0.98747 0.99086 1.70152 1.17789 1.24866 1.44040 0.86590 0.78186 0.80908 0.81860 1.22949 1.21812 1.16553 1.21429 0.87820 0.90018 1.00129 1.22024 0.98361 0.98087 0.83457 1.20927 0.99728 0.92842 0.90794 1.20716 0.92360 1.11621 0.98308 0.92353 0.91573 0.92793 0.91849 0.93064 0.90242 0.88954 0.89028 0.90380 0.90315 0.92395 0.93624 0.83575 0.84271 0.90538 0.86441 0.95327 0.91771 0.92678 0.95730 0.90509 0.89276 0.91151 0.86100 0.83713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 71.98 0.71 -0.67 16 2 C -0.14 -1.54 6.26 30.60 0.19 -1.35 16 3 C 0.12 1.18 5.15 86.38 0.44 1.63 16 4 N -0.62 -8.19 2.59 -697.32 -1.81 -9.99 16 5 C 0.11 1.04 5.86 86.38 0.51 1.55 16 6 C -0.17 -1.48 10.24 71.98 0.74 -0.74 16 7 C 0.24 4.60 6.55 38.47 0.25 4.85 16 8 C -0.21 -4.14 9.18 22.36 0.21 -3.93 16 9 C -0.04 -1.04 7.33 22.50 0.16 -0.87 16 10 C -0.22 -6.39 5.37 -20.08 -0.11 -6.50 16 11 C 0.56 20.12 7.39 86.69 0.64 20.76 16 12 O -0.59 -24.67 16.21 -4.04 -0.07 -24.74 16 13 N -0.60 -21.34 2.94 -820.91 -2.41 -23.75 16 14 C 0.09 2.88 4.97 86.56 0.43 3.31 16 15 C 0.13 5.33 4.58 86.56 0.40 5.73 16 16 N -0.61 -28.67 2.63 -697.36 -1.84 -30.51 16 17 C -0.26 -14.61 9.82 84.03 0.83 -13.78 16 18 H 0.05 3.03 8.06 -2.91 -0.02 3.01 16 19 C 0.00 -0.26 4.82 84.86 0.41 0.15 16 20 N -0.93 -55.77 13.97 21.65 0.30 -55.46 16 21 Si 0.90 43.79 26.65 68.60 1.83 45.62 16 22 H -0.30 -15.13 7.11 99.48 0.71 -14.43 16 23 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 24 H -0.24 -11.09 4.92 99.48 0.49 -10.60 16 25 C 0.13 5.34 6.67 86.41 0.58 5.92 16 26 C 0.10 3.79 6.60 86.41 0.57 4.36 16 27 C -0.02 -0.61 9.59 22.50 0.22 -0.39 16 28 C -0.21 -4.26 9.18 22.35 0.21 -4.06 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.08 0.82 6.16 -2.39 -0.01 0.81 16 35 H 0.09 0.63 8.07 -2.39 -0.02 0.61 16 36 H 0.09 0.59 8.07 -2.39 -0.02 0.57 16 37 H 0.08 0.76 6.17 -2.39 -0.01 0.75 16 38 H 0.08 0.48 8.14 -2.38 -0.02 0.46 16 39 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.15 2.29 6.11 -2.91 -0.02 2.28 16 42 H 0.14 3.23 5.85 -2.91 -0.02 3.21 16 43 H 0.08 2.52 8.09 -2.38 -0.02 2.50 16 44 H 0.12 3.37 4.18 -2.39 -0.01 3.36 16 45 H 0.03 1.23 6.69 -2.38 -0.02 1.21 16 46 H 0.06 2.83 5.95 -2.39 -0.01 2.82 16 47 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 48 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.08 3.02 7.94 -2.38 -0.02 3.00 16 50 H 0.09 3.17 6.99 -2.39 -0.02 3.15 16 51 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 52 H 0.12 3.26 7.98 -2.90 -0.02 3.23 16 53 H 0.15 2.31 6.11 -2.91 -0.02 2.29 16 Total: -1.00 -70.33 405.75 4.06 -66.26 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.68 Total: 16.62 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: 7.38 Total: 15.96 kcal Atomic # 7 Polarization: -113.97 SS G_CDS: -5.75 Total: -119.72 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.07 Total: -24.74 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.83 Total: 45.62 kcal Total: -70.33 4.06 -66.26 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265778655.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.393 kcal (2) G-P(sol) polarization free energy of solvation -70.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds