Wall clock time and date at job start Wed Apr 1 2020 03:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47317 * 2 1 4 4 C 1.52999 * 109.46797 * 239.99888 * 2 1 3 5 5 N 1.46499 * 109.47326 * 304.07750 * 4 2 1 6 6 C 1.34780 * 119.99669 * 184.90381 * 5 4 2 7 7 O 1.21579 * 120.00220 * 359.97438 * 6 5 4 8 8 N 1.34783 * 119.99575 * 180.02562 * 6 5 4 9 9 C 1.46496 * 119.99707 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47033 * 180.02562 * 9 8 6 11 11 C 1.50695 * 109.47077 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00543 * 0.02562 * 11 10 9 13 13 C 1.37884 * 120.00116 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99493 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00025 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47426 * 59.99832 * 15 13 11 17 17 H 1.48504 * 109.47094 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47278 * 299.99798 * 15 13 11 19 19 N 1.46900 * 109.47089 * 120.00142 * 2 1 3 20 20 C 1.47165 * 110.99870 * 157.19922 * 19 2 1 21 21 C 1.52888 * 108.50517 * 52.15925 * 20 19 2 22 22 C 1.50723 * 109.96112 * 50.39024 * 21 20 19 23 23 C 1.38676 * 118.48742 * 163.47934 * 22 21 20 24 24 C 1.38036 * 120.34670 * 179.97438 * 23 22 21 25 25 C 1.38259 * 119.82533 * 359.54907 * 24 23 22 26 26 C 1.38010 * 119.87233 * 0.32146 * 25 24 23 27 27 C 1.37823 * 121.65866 * 343.09321 * 22 21 20 28 28 C 1.46636 * 111.00133 * 280.19043 * 19 2 1 29 29 H 1.09008 * 109.46980 * 305.11789 * 1 2 3 30 30 H 1.09001 * 109.47275 * 65.11986 * 1 2 3 31 31 H 1.09000 * 109.47263 * 185.12432 * 1 2 3 32 32 H 1.09000 * 109.47786 * 189.31455 * 3 2 1 33 33 H 1.09000 * 109.47411 * 309.31874 * 3 2 1 34 34 H 1.09003 * 109.46897 * 69.31070 * 3 2 1 35 35 H 1.08999 * 109.47036 * 64.08563 * 4 2 1 36 36 H 1.09005 * 109.46711 * 184.07442 * 4 2 1 37 37 H 0.96999 * 119.99880 * 4.90436 * 5 4 2 38 38 H 0.96999 * 119.99973 * 0.02562 * 8 6 5 39 39 H 1.09005 * 109.47567 * 300.00468 * 9 8 6 40 40 H 1.09003 * 109.47222 * 60.00070 * 9 8 6 41 41 H 1.09002 * 109.47051 * 300.00135 * 10 9 8 42 42 H 1.08995 * 109.46933 * 60.00234 * 10 9 8 43 43 H 0.97007 * 119.99588 * 180.02562 * 14 13 11 44 44 H 1.09007 * 109.62986 * 171.85850 * 20 19 2 45 45 H 1.09000 * 109.63139 * 292.44927 * 20 19 2 46 46 H 1.09004 * 109.39350 * 170.53830 * 21 20 19 47 47 H 1.09001 * 109.39278 * 290.33938 * 21 20 19 48 48 H 1.07996 * 119.82783 * 359.74918 * 23 22 21 49 49 H 1.08005 * 120.08779 * 179.81866 * 24 23 22 50 50 H 1.08007 * 120.06442 * 180.34889 * 25 24 23 51 51 H 1.08004 * 119.81638 * 179.97438 * 26 25 24 52 52 H 1.08996 * 109.30076 * 168.79131 * 28 19 2 53 53 H 1.08998 * 109.29673 * 49.41903 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 1.4730 -2.0712 -1.2994 6 6 1.8604 -2.9294 -2.2637 7 8 2.6800 -2.5831 -3.0923 8 7 1.3385 -4.1712 -2.3101 9 6 1.7591 -5.1038 -3.3586 10 6 1.0210 -6.4327 -3.1853 11 6 1.4542 -7.3922 -4.2635 12 1 2.1834 -7.0852 -4.9987 13 6 0.9195 -8.6623 -4.3116 14 7 0.0320 -9.0364 -3.4162 15 14 1.4570 -9.8519 -5.6477 16 1 2.9206 -10.0824 -5.5459 17 1 0.7405 -11.1417 -5.4796 18 1 1.1379 -9.2778 -6.9794 19 7 2.0196 -0.6925 1.1994 20 6 3.3895 -1.1911 0.9982 21 6 4.2598 -0.0341 0.5069 22 6 4.0826 1.1615 1.4075 23 6 5.0231 2.1789 1.3490 24 6 4.8980 3.2915 2.1563 25 6 3.8243 3.3965 3.0211 26 6 2.8863 2.3857 3.0782 27 6 3.0132 1.2646 2.2708 28 6 1.9665 0.1862 2.3721 29 1 -0.3633 0.5912 0.8407 30 1 -0.3634 0.4324 -0.9323 31 1 -0.3634 -1.0235 0.0918 32 1 3.1172 1.4470 -0.1663 33 1 1.5472 2.0021 -0.7950 34 1 1.8188 1.9060 0.9614 35 1 1.7375 -0.1669 -2.1377 36 1 3.1275 -0.7849 -1.2135 37 1 0.8189 -2.3474 -0.6385 38 1 0.6838 -4.4471 -1.6497 39 1 1.5234 -4.6823 -4.3359 40 1 2.8336 -5.2723 -3.2854 41 1 1.2564 -6.8543 -2.2081 42 1 -0.0533 -6.2638 -3.2589 43 1 -0.3439 -9.9300 -3.4498 44 1 3.7833 -1.5708 1.9411 45 1 3.3839 -1.9870 0.2534 46 1 5.3060 -0.3399 0.5134 47 1 3.9672 0.2331 -0.5085 48 1 5.8597 2.0986 0.6709 49 1 5.6345 4.0801 2.1094 50 1 3.7196 4.2680 3.6504 51 1 2.0482 2.4684 3.7543 52 1 2.1422 -0.4031 3.2721 53 1 0.9801 0.6461 2.4332 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273255261.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:01 Heat of formation + Delta-G solvation = 15.005641 kcal Electronic energy + Delta-G solvation = -31086.498095 eV Core-core repulsion = 27151.446582 eV Total energy + Delta-G solvation = -3935.051514 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.86346 -40.85763 -38.99027 -36.64468 -35.72548 -34.78125 -34.22972 -33.30421 -31.96183 -31.36592 -30.18859 -27.97057 -27.42364 -26.11481 -25.45213 -24.21271 -23.07995 -22.87922 -21.87955 -21.51583 -19.83288 -19.03672 -18.38855 -17.81431 -17.52581 -17.41776 -16.52584 -16.51855 -16.43152 -16.18514 -15.70734 -15.27316 -15.17418 -15.03894 -14.76260 -14.47910 -14.33074 -14.19039 -14.01689 -13.77899 -13.48100 -13.36142 -13.19035 -13.10432 -13.01255 -12.89020 -12.75307 -12.51926 -12.39790 -12.33693 -12.19301 -12.02690 -11.85826 -11.65251 -11.53811 -11.47219 -11.18429 -11.13375 -10.57965 -10.25912 -9.66378 -9.58451 -9.36498 -9.17722 -8.21816 -6.31937 0.44020 0.48743 1.42935 1.45483 1.53252 1.82694 2.23114 2.43058 2.81685 2.86782 3.12749 3.46371 3.54674 3.74554 3.83457 3.92612 3.95872 4.04120 4.14243 4.18618 4.29282 4.49840 4.51804 4.53552 4.56493 4.57984 4.62869 4.68493 4.69094 4.74424 4.78391 4.85951 4.89728 4.94898 4.96393 5.04692 5.05836 5.14019 5.22093 5.27120 5.34775 5.40323 5.53615 5.55595 5.60004 5.62570 5.65999 5.69125 5.81798 6.02782 6.10806 6.12959 6.14761 6.19975 6.80993 7.19389 7.37062 7.66502 8.89807 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.026944 B = 0.001920 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.944986 B =14581.401915 C =14816.923951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.105 3.895 3 C -0.202 4.202 4 C 0.134 3.866 5 N -0.720 5.720 6 C 0.697 3.303 7 O -0.643 6.643 8 N -0.734 5.734 9 C 0.162 3.838 10 C 0.024 3.976 11 C -0.547 4.547 12 H 0.058 0.942 13 C 0.007 3.993 14 N -0.926 5.926 15 Si 0.965 3.035 16 H -0.269 1.269 17 H -0.281 1.281 18 H -0.269 1.269 19 N -0.513 5.513 20 C 0.051 3.949 21 C -0.132 4.132 22 C -0.077 4.077 23 C -0.136 4.136 24 C -0.131 4.131 25 C -0.128 4.128 26 C -0.127 4.127 27 C -0.104 4.104 28 C 0.089 3.911 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.088 0.912 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.411 0.589 38 H 0.406 0.594 39 H 0.041 0.959 40 H 0.042 0.958 41 H 0.008 0.992 42 H 0.008 0.992 43 H 0.265 0.735 44 H 0.081 0.919 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.088 0.912 48 H 0.123 0.877 49 H 0.133 0.867 50 H 0.138 0.862 51 H 0.140 0.860 52 H 0.095 0.905 53 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.774 27.505 17.487 32.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.015 3.985 3 C -0.260 4.260 4 C 0.010 3.990 5 N -0.378 5.378 6 C 0.397 3.603 7 O -0.525 6.525 8 N -0.388 5.388 9 C 0.038 3.962 10 C -0.013 4.013 11 C -0.585 4.585 12 H 0.077 0.923 13 C -0.192 4.192 14 N -0.565 5.565 15 Si 0.789 3.211 16 H -0.194 1.194 17 H -0.206 1.206 18 H -0.194 1.194 19 N -0.234 5.234 20 C -0.077 4.077 21 C -0.170 4.170 22 C -0.078 4.078 23 C -0.154 4.154 24 C -0.149 4.149 25 C -0.146 4.146 26 C -0.146 4.146 27 C -0.105 4.105 28 C -0.038 4.038 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.107 0.893 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.248 0.752 38 H 0.241 0.759 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.027 0.973 42 H 0.027 0.973 43 H 0.074 0.926 44 H 0.100 0.900 45 H 0.090 0.910 46 H 0.096 0.904 47 H 0.106 0.894 48 H 0.141 0.859 49 H 0.151 0.849 50 H 0.156 0.844 51 H 0.157 0.843 52 H 0.113 0.887 53 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.062 27.230 16.872 32.290 hybrid contribution 0.343 -0.355 -0.431 0.655 sum 4.405 26.875 16.441 31.811 Atomic orbital electron populations 1.21805 0.92066 1.02790 1.02462 1.21238 0.96719 0.92219 0.88346 1.23749 1.03067 0.95724 1.03460 1.21711 0.98810 0.81233 0.97261 1.44895 1.48006 1.13288 1.31577 1.16168 0.81090 0.81000 0.82037 1.90850 1.39367 1.78384 1.43927 1.45201 1.47284 1.12164 1.34191 1.21038 0.97829 0.88601 0.88768 1.19118 0.95068 0.90565 0.96555 1.21439 1.24903 0.98485 1.13687 0.92332 1.25873 0.94883 1.00029 0.98435 1.70057 1.29767 1.20162 1.36528 0.85502 0.78643 0.77672 0.79244 1.19376 1.20573 1.19385 1.62823 1.21525 1.35870 1.03214 1.22206 0.87350 0.96177 1.01961 1.21680 1.01935 0.94391 0.99017 1.19412 0.95126 0.96142 0.97075 1.21249 0.99355 0.94398 1.00446 1.21300 0.98868 0.98105 0.96577 1.21342 0.94558 0.99507 0.99160 1.21268 1.00370 0.93398 0.99529 1.20317 0.96435 0.97333 0.96436 1.21264 0.97348 0.91363 0.93873 0.90996 0.92019 0.91755 0.89965 0.92688 0.89345 0.92593 0.90967 0.75168 0.75904 0.94018 0.93958 0.97323 0.97334 0.92574 0.90015 0.90991 0.90408 0.89409 0.85914 0.84861 0.84412 0.84266 0.88715 0.88090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 8.25 71.98 0.59 -1.27 16 2 C 0.10 1.67 0.38 3.52 0.00 1.67 16 3 C -0.20 -3.10 6.64 71.98 0.48 -2.62 16 4 C 0.13 2.99 3.59 86.38 0.31 3.30 16 5 N -0.72 -18.07 4.57 -478.53 -2.19 -20.26 16 6 C 0.70 24.57 8.57 179.05 1.53 26.10 16 7 O -0.64 -28.14 16.34 -3.96 -0.06 -28.21 16 8 N -0.73 -26.44 5.56 -478.53 -2.66 -29.10 16 9 C 0.16 7.20 5.61 86.38 0.48 7.68 16 10 C 0.02 1.25 5.09 29.85 0.15 1.41 16 11 C -0.55 -30.91 9.11 25.60 0.23 -30.67 16 12 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 13 C 0.01 0.37 5.46 84.66 0.46 0.83 16 14 N -0.93 -54.59 13.29 21.45 0.28 -54.30 16 15 Si 0.96 43.98 29.54 68.60 2.03 46.00 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 17 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 19 N -0.51 -7.96 4.78 -851.60 -4.07 -12.04 16 20 C 0.05 0.93 5.38 86.22 0.46 1.39 16 21 C -0.13 -2.29 4.73 29.82 0.14 -2.15 16 22 C -0.08 -1.23 3.28 -19.85 -0.07 -1.29 16 23 C -0.14 -2.09 9.59 22.33 0.21 -1.88 16 24 C -0.13 -1.72 10.05 22.23 0.22 -1.50 16 25 C -0.13 -1.51 10.05 22.22 0.22 -1.28 16 26 C -0.13 -1.50 9.26 22.34 0.21 -1.30 16 27 C -0.10 -1.43 3.15 -19.87 -0.06 -1.49 16 28 C 0.09 1.11 5.05 85.58 0.43 1.55 16 29 H 0.07 0.81 7.15 -2.38 -0.02 0.79 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.93 6.71 -2.39 -0.02 0.91 16 32 H 0.08 1.40 3.10 -2.39 -0.01 1.40 16 33 H 0.05 0.84 8.12 -2.39 -0.02 0.82 16 34 H 0.09 1.26 4.31 -2.39 -0.01 1.25 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.07 1.78 4.11 -2.38 -0.01 1.77 16 37 H 0.41 8.53 6.98 -92.71 -0.65 7.89 16 38 H 0.41 12.54 8.49 -92.71 -0.79 11.76 16 39 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 40 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.27 14.74 8.31 -92.70 -0.77 13.97 16 44 H 0.08 1.41 8.05 -2.38 -0.02 1.39 16 45 H 0.07 1.62 6.29 -2.39 -0.02 1.60 16 46 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.09 1.67 3.74 -2.39 -0.01 1.66 16 48 H 0.12 1.69 8.06 -2.91 -0.02 1.67 16 49 H 0.13 1.28 8.06 -2.91 -0.02 1.26 16 50 H 0.14 1.05 8.06 -2.91 -0.02 1.02 16 51 H 0.14 1.07 8.06 -2.91 -0.02 1.04 16 52 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 53 H 0.10 1.00 6.72 -2.39 -0.02 0.98 16 Total: -1.00 -68.58 395.79 -1.14 -69.72 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: -0.49 Total: 29.69 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 6.03 Total: -1.52 kcal Atomic # 7 Polarization: -107.06 SS G_CDS: -8.64 Total: -115.69 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -0.06 Total: -28.21 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -68.58 -1.14 -69.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273255261.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.725 kcal (2) G-P(sol) polarization free energy of solvation -68.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds