Wall clock time and date at job start Wed Apr 1 2020 04:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46892 * 2 1 4 4 N 1.46502 * 109.47016 * 179.97438 * 3 2 1 5 5 C 1.36936 * 120.00296 * 275.94532 * 4 3 2 6 6 H 1.07994 * 119.99802 * 351.99748 * 5 4 3 7 7 C 1.38813 * 119.99800 * 172.00475 * 5 4 3 8 8 N 1.31610 * 120.00250 * 336.88803 * 7 5 4 9 9 Si 1.86805 * 119.99845 * 156.89086 * 7 5 4 10 10 H 1.48505 * 109.47009 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47146 * 119.99526 * 9 7 5 12 12 H 1.48499 * 109.47117 * 239.99710 * 9 7 5 13 13 C 1.46504 * 119.99764 * 95.94333 * 4 3 2 14 14 C 1.50708 * 109.47122 * 270.00040 * 13 4 3 15 15 O 1.21283 * 119.99352 * 359.97438 * 14 13 4 16 16 N 1.34770 * 120.00164 * 179.97438 * 14 13 4 17 17 C 1.46498 * 120.00211 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47338 * 179.97438 * 17 16 14 19 19 H 1.09005 * 110.87303 * 57.39288 * 18 17 16 20 20 C 1.55135 * 110.99565 * 293.55117 * 18 17 16 21 21 C 1.54309 * 103.02207 * 206.21766 * 20 18 17 22 22 N 1.47447 * 107.23457 * 22.27736 * 21 20 18 23 23 C 1.39672 * 110.99796 * 123.25751 * 22 21 20 24 24 C 1.38919 * 120.07566 * 34.20289 * 23 22 21 25 25 C 1.38100 * 119.92529 * 179.97438 * 24 23 22 26 26 C 1.38285 * 120.07446 * 359.97438 * 25 24 23 27 27 C 1.38280 * 120.15058 * 0.27854 * 26 25 24 28 28 C 1.38103 * 120.07732 * 359.44637 * 27 26 25 29 29 C 1.47845 * 108.56635 * 0.99664 * 22 21 20 30 30 H 1.08998 * 109.46872 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47480 * 299.99982 * 1 2 3 32 32 H 1.09007 * 109.46983 * 60.00373 * 1 2 3 33 33 H 1.08998 * 109.47480 * 240.00017 * 2 1 3 34 34 H 1.08997 * 109.47159 * 119.99702 * 2 1 3 35 35 H 1.08998 * 109.47044 * 59.99750 * 3 2 1 36 36 H 1.08994 * 109.47136 * 299.99323 * 3 2 1 37 37 H 0.97001 * 120.00227 * 180.02562 * 8 7 5 38 38 H 1.08996 * 109.47360 * 150.00429 * 13 4 3 39 39 H 1.08997 * 109.47088 * 29.99412 * 13 4 3 40 40 H 0.96996 * 120.00007 * 0.02562 * 16 14 13 41 41 H 1.09002 * 109.46818 * 60.00251 * 17 16 14 42 42 H 1.08998 * 109.47348 * 300.00126 * 17 16 14 43 43 H 1.09001 * 110.71078 * 87.82843 * 20 18 17 44 44 H 1.09008 * 110.85103 * 324.67085 * 20 18 17 45 45 H 1.09004 * 109.88793 * 262.87619 * 21 20 18 46 46 H 1.08995 * 109.89479 * 141.68480 * 21 20 18 47 47 H 1.08003 * 120.03281 * 359.95298 * 24 23 22 48 48 H 1.07997 * 119.96086 * 180.02562 * 25 24 23 49 49 H 1.08003 * 119.91898 * 179.97438 * 26 25 24 50 50 H 1.08003 * 119.96036 * 179.69573 * 27 26 25 51 51 H 1.07999 * 120.04063 * 180.27474 * 28 27 26 52 52 H 1.08999 * 110.37700 * 94.73108 * 29 22 21 53 53 H 1.09002 * 110.37065 * 217.07446 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1892 1.3200 1.1804 6 1 3.6567 1.3532 2.1194 7 6 5.5672 1.1531 1.1694 8 7 6.1626 0.6657 0.1016 9 14 6.5766 1.6202 2.6702 10 1 5.6760 2.1410 3.7300 11 1 7.2956 0.4231 3.1754 12 1 7.5606 2.6683 2.2983 13 6 4.2379 1.5738 -1.2611 14 6 4.4894 0.2055 -1.8406 15 8 4.0955 -0.7819 -1.2569 16 7 5.1519 0.0792 -3.0074 17 6 5.3968 -1.2508 -3.5705 18 6 6.1610 -1.1138 -4.8888 19 1 7.0979 -0.5767 -4.7406 20 6 5.2881 -0.4208 -5.9679 21 6 5.8759 -0.9594 -7.2891 22 7 6.5671 -2.2238 -6.9764 23 6 6.0602 -3.2745 -7.7445 24 6 5.6266 -3.0413 -9.0435 25 6 5.1265 -4.0826 -9.8003 26 6 5.0576 -5.3564 -9.2666 27 6 5.4835 -5.5911 -7.9721 28 6 5.9899 -4.5555 -7.2116 29 6 6.4121 -2.5003 -5.5324 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6765 1.9564 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 7.1255 0.5488 0.0941 38 1 5.1903 2.0713 -1.0780 39 1 3.6491 2.1633 -1.9637 40 1 5.4672 0.8690 -3.4740 41 1 4.4446 -1.7490 -3.7531 42 1 5.9862 -1.8400 -2.8680 43 1 5.3942 0.6626 -5.9122 44 1 4.2421 -0.7100 -5.8652 45 1 6.5852 -0.2408 -7.6996 46 1 5.0741 -1.1423 -8.0045 47 1 5.6803 -2.0466 -9.4609 48 1 4.7896 -3.9020 -10.8103 49 1 4.6656 -6.1688 -9.8605 50 1 5.4237 -6.5862 -7.5566 51 1 6.3265 -4.7403 -6.2022 52 1 5.5599 -3.1580 -5.3613 53 1 7.3227 -2.9456 -5.1314 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299372405.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:39 Heat of formation + Delta-G solvation = 5.789119 kcal Electronic energy + Delta-G solvation = -30582.409540 eV Core-core repulsion = 26646.958368 eV Total energy + Delta-G solvation = -3935.451172 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.49097 -40.09342 -38.80158 -37.44384 -35.62869 -34.62049 -33.21956 -32.38544 -32.24096 -30.56861 -29.53593 -28.71134 -27.26424 -26.08131 -23.97014 -23.81136 -23.10636 -21.84527 -21.61140 -21.09693 -20.87358 -18.86517 -18.46441 -17.48732 -17.27963 -17.00332 -16.59220 -16.11129 -15.95691 -15.90915 -15.61072 -15.40418 -15.26310 -14.78141 -14.68632 -14.43992 -14.26987 -14.13298 -13.95669 -13.74972 -13.65060 -13.31646 -13.20581 -12.97608 -12.69206 -12.66153 -12.51071 -12.34339 -12.24067 -12.20659 -12.06871 -11.89626 -11.81043 -11.76655 -11.68084 -11.61214 -11.27434 -10.74072 -10.61829 -10.12551 -9.83854 -9.57865 -8.81730 -8.75720 -7.83284 -5.08945 0.48503 0.49013 1.46465 1.49920 1.58841 2.49319 2.52987 2.65919 2.80624 3.05622 3.33016 3.51230 3.61462 3.74216 3.80507 4.00563 4.09492 4.21976 4.29357 4.29418 4.32925 4.35358 4.43439 4.54442 4.55504 4.58886 4.63805 4.67048 4.69870 4.75325 4.81568 4.85226 4.88061 4.92467 4.96683 5.04490 5.06845 5.12485 5.21969 5.24728 5.29615 5.32029 5.37222 5.46820 5.52917 5.67236 5.68757 5.75340 5.85889 5.96688 6.02223 6.32128 6.33807 7.07007 7.24456 7.88567 8.14272 8.31725 9.23630 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.014158 B = 0.002337 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.263070 B =11979.628250 C =12925.116695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.132 4.132 3 C 0.147 3.853 4 N -0.593 5.593 5 C -0.247 4.247 6 H 0.068 0.932 7 C -0.052 4.052 8 N -0.916 5.916 9 Si 0.961 3.039 10 H -0.274 1.274 11 H -0.307 1.307 12 H -0.286 1.286 13 C 0.160 3.840 14 C 0.528 3.472 15 O -0.579 6.579 16 N -0.733 5.733 17 C 0.151 3.849 18 C -0.095 4.095 19 H 0.094 0.906 20 C -0.128 4.128 21 C 0.039 3.961 22 N -0.484 5.484 23 C 0.096 3.904 24 C -0.170 4.170 25 C -0.096 4.096 26 C -0.161 4.161 27 C -0.101 4.101 28 C -0.184 4.184 29 C 0.052 3.948 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.039 0.961 34 H 0.019 0.981 35 H 0.048 0.952 36 H 0.064 0.936 37 H 0.243 0.757 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.401 0.599 41 H 0.042 0.958 42 H 0.029 0.971 43 H 0.098 0.902 44 H 0.065 0.935 45 H 0.096 0.904 46 H 0.078 0.922 47 H 0.138 0.862 48 H 0.145 0.855 49 H 0.140 0.860 50 H 0.136 0.864 51 H 0.122 0.878 52 H 0.058 0.942 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.843 -3.586 -21.532 22.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.172 4.172 3 C 0.022 3.978 4 N -0.312 5.312 5 C -0.377 4.377 6 H 0.086 0.914 7 C -0.247 4.247 8 N -0.563 5.563 9 Si 0.791 3.209 10 H -0.199 1.199 11 H -0.236 1.236 12 H -0.212 1.212 13 C 0.030 3.970 14 C 0.316 3.684 15 O -0.457 6.457 16 N -0.388 5.388 17 C 0.025 3.975 18 C -0.114 4.114 19 H 0.113 0.887 20 C -0.166 4.166 21 C -0.086 4.086 22 N -0.197 5.197 23 C -0.003 4.003 24 C -0.190 4.190 25 C -0.115 4.115 26 C -0.180 4.180 27 C -0.119 4.119 28 C -0.204 4.204 29 C -0.075 4.075 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.038 0.962 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.053 0.947 38 H 0.106 0.894 39 H 0.086 0.914 40 H 0.236 0.764 41 H 0.060 0.940 42 H 0.047 0.953 43 H 0.116 0.884 44 H 0.084 0.916 45 H 0.115 0.885 46 H 0.097 0.903 47 H 0.155 0.845 48 H 0.163 0.837 49 H 0.158 0.842 50 H 0.154 0.846 51 H 0.140 0.860 52 H 0.077 0.923 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.448 -4.147 -21.141 21.683 hybrid contribution 0.634 -0.298 1.225 1.411 sum -1.815 -4.444 -19.916 20.486 Atomic orbital electron populations 1.21677 0.94351 1.01322 1.02135 1.21993 0.95730 0.99593 0.99873 1.21076 0.82512 0.94284 0.99935 1.44280 1.01226 1.83060 1.02635 1.19446 0.90018 1.42158 0.86064 0.91376 1.25299 0.98067 1.01365 0.99922 1.70046 1.08315 1.47579 1.30388 0.85299 0.78739 0.76830 0.80044 1.19852 1.23583 1.21244 1.20802 0.97912 0.91870 0.86397 1.22072 0.74777 0.93620 0.77968 1.90472 1.53599 1.41647 1.59939 1.45896 1.60562 1.08068 1.24284 1.20800 0.97755 0.85823 0.93098 1.22385 0.99552 0.96488 0.92973 0.88729 1.22815 0.98844 1.02081 0.92888 1.23197 0.97746 0.89855 0.97833 1.60572 1.51330 1.03028 1.04786 1.19409 0.94605 0.91794 0.94459 1.21134 1.03535 1.00812 0.93567 1.21330 0.97408 0.92411 1.00311 1.21372 1.02755 0.97904 0.95921 1.21280 0.96966 0.99067 0.94612 1.21197 1.05368 0.92858 1.01013 1.23143 1.01787 0.96908 0.85659 0.93270 0.92197 0.91697 0.94206 0.96242 0.93365 0.91740 0.94709 0.89447 0.91363 0.76420 0.93977 0.95286 0.88385 0.91591 0.88542 0.90336 0.84470 0.83678 0.84184 0.84618 0.86030 0.92333 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.19 9.91 71.98 0.71 -3.48 16 2 C -0.13 -5.50 5.72 30.60 0.17 -5.32 16 3 C 0.15 6.07 5.72 86.38 0.49 6.57 16 4 N -0.59 -29.24 2.06 -706.33 -1.46 -30.70 16 5 C -0.25 -13.61 9.71 84.03 0.82 -12.79 16 6 H 0.07 3.77 7.93 -2.91 -0.02 3.75 16 7 C -0.05 -2.88 4.96 84.86 0.42 -2.46 16 8 N -0.92 -51.71 8.90 21.65 0.19 -51.52 16 9 Si 0.96 45.58 29.61 68.60 2.03 47.62 16 10 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.31 -15.16 7.11 99.48 0.71 -14.45 16 12 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 13 C 0.16 7.21 5.47 85.63 0.47 7.68 16 14 C 0.53 24.29 5.92 87.66 0.52 24.81 16 15 O -0.58 -32.19 13.97 -3.04 -0.04 -32.23 16 16 N -0.73 -25.99 5.41 -463.07 -2.50 -28.49 16 17 C 0.15 4.89 5.12 86.38 0.44 5.33 16 18 C -0.09 -2.19 3.10 -9.41 -0.03 -2.22 16 19 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 20 C -0.13 -2.39 6.11 31.77 0.19 -2.19 16 21 C 0.04 0.67 6.19 86.64 0.54 1.20 16 22 N -0.48 -10.34 5.28 -685.16 -3.61 -13.95 16 23 C 0.10 2.08 5.79 38.22 0.22 2.31 16 24 C -0.17 -3.10 8.60 22.40 0.19 -2.91 16 25 C -0.10 -1.51 10.04 22.25 0.22 -1.29 16 26 C -0.16 -2.58 10.04 22.29 0.22 -2.35 16 27 C -0.10 -1.85 10.04 22.25 0.22 -1.63 16 28 C -0.18 -3.96 8.66 22.40 0.19 -3.77 16 29 C 0.05 1.17 4.91 86.77 0.43 1.60 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.04 1.86 6.38 -2.39 -0.02 1.84 16 34 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.05 1.91 8.09 -2.39 -0.02 1.89 16 36 H 0.06 2.28 7.83 -2.39 -0.02 2.26 16 37 H 0.24 13.63 8.31 -92.71 -0.77 12.86 16 38 H 0.09 4.27 6.19 -2.39 -0.01 4.25 16 39 H 0.07 2.52 7.86 -2.39 -0.02 2.50 16 40 H 0.40 11.59 8.34 -92.71 -0.77 10.82 16 41 H 0.04 1.45 8.11 -2.39 -0.02 1.43 16 42 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.07 1.36 8.02 -2.38 -0.02 1.34 16 45 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.08 1.24 5.80 -2.39 -0.01 1.22 16 47 H 0.14 2.04 6.64 -2.91 -0.02 2.02 16 48 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 49 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 50 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 51 H 0.12 2.60 6.53 -2.91 -0.02 2.58 16 52 H 0.06 1.41 6.53 -2.39 -0.02 1.39 16 53 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -71.31 412.53 1.18 -70.13 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: 0.12 Total: 30.08 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 6.45 Total: 9.07 kcal Atomic # 7 Polarization: -117.28 SS G_CDS: -7.38 Total: -124.66 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -0.04 Total: -32.23 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.62 kcal Total: -71.31 1.18 -70.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299372405.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.923 kcal (2) G-P(sol) polarization free energy of solvation -71.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds