Wall clock time and date at job start Wed Apr 1 2020 03:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47076 * 2 1 4 4 C 1.52998 * 109.47376 * 239.99393 * 2 1 3 5 5 H 1.09008 * 109.46736 * 59.32114 * 4 2 1 6 6 C 1.50701 * 109.47320 * 299.32553 * 4 2 1 7 7 O 1.21279 * 120.00138 * 264.34304 * 6 4 2 8 8 N 1.34775 * 119.99999 * 84.33911 * 6 4 2 9 9 C 1.46501 * 120.00062 * 176.33755 * 8 6 4 10 10 C 1.53001 * 109.47709 * 179.97438 * 9 8 6 11 11 C 1.53042 * 109.45763 * 295.03142 * 10 9 8 12 12 C 1.53200 * 109.31017 * 178.59712 * 11 10 9 13 13 N 1.46918 * 108.76483 * 54.65049 * 12 11 10 14 14 C 1.36938 * 120.63022 * 126.36158 * 13 12 11 15 15 H 1.08005 * 119.99657 * 331.71235 * 14 13 12 16 16 C 1.38811 * 120.00328 * 151.71088 * 14 13 12 17 17 N 1.31619 * 119.99689 * 342.35742 * 16 14 13 18 18 Si 1.86803 * 120.00238 * 162.35278 * 16 14 13 19 19 H 1.48501 * 109.47141 * 90.00294 * 18 16 14 20 20 H 1.48501 * 109.47121 * 210.00136 * 18 16 14 21 21 H 1.48506 * 109.46958 * 330.00253 * 18 16 14 22 22 C 1.46920 * 118.74249 * 306.38320 * 13 12 11 23 23 C 1.53035 * 109.46426 * 174.96940 * 10 9 8 24 24 C 1.50698 * 109.47414 * 179.32338 * 4 2 1 25 25 C 1.38673 * 120.41739 * 239.72521 * 24 4 2 26 26 C 1.38623 * 118.42053 * 179.78191 * 25 24 4 27 27 C 1.38234 * 119.15827 * 0.51322 * 26 25 24 28 28 N 1.31852 * 120.76297 * 359.72501 * 27 26 25 29 29 C 1.31888 * 121.72722 * 0.02562 * 28 27 26 30 30 H 1.09002 * 109.47073 * 55.97930 * 1 2 3 31 31 H 1.09007 * 109.46945 * 175.97644 * 1 2 3 32 32 H 1.08996 * 109.47450 * 295.97061 * 1 2 3 33 33 H 1.09005 * 109.46811 * 119.99491 * 2 1 3 34 34 H 1.08998 * 109.47588 * 59.99508 * 3 2 1 35 35 H 1.09004 * 109.47396 * 180.02562 * 3 2 1 36 36 H 1.09005 * 109.46885 * 299.99446 * 3 2 1 37 37 H 0.96997 * 120.00356 * 356.33609 * 8 6 4 38 38 H 1.09002 * 109.47333 * 299.99907 * 9 8 6 39 39 H 1.09002 * 109.47045 * 59.99657 * 9 8 6 40 40 H 1.09010 * 109.45646 * 54.99802 * 10 9 8 41 41 H 1.08994 * 109.49412 * 298.55601 * 11 10 9 42 42 H 1.08995 * 109.50280 * 58.65806 * 11 10 9 43 43 H 1.08995 * 109.59438 * 294.86406 * 12 11 10 44 44 H 1.08997 * 109.69679 * 174.50240 * 12 11 10 45 45 H 0.97000 * 119.99915 * 180.02562 * 17 16 14 46 46 H 1.08994 * 109.58925 * 293.82289 * 22 13 12 47 47 H 1.09001 * 109.70831 * 173.46525 * 22 13 12 48 48 H 1.08994 * 109.49792 * 301.33826 * 23 10 9 49 49 H 1.09004 * 109.49395 * 61.40662 * 23 10 9 50 50 H 1.08004 * 120.79292 * 0.02562 * 25 24 4 51 51 H 1.07995 * 120.42427 * 180.21747 * 26 25 24 52 52 H 1.08004 * 119.61471 * 179.75182 * 27 26 25 53 53 H 1.07999 * 119.61491 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7214 -1.2491 5 1 1.6668 -0.2146 -2.1392 6 6 1.5515 -2.1469 -1.2407 7 8 2.2625 -3.0291 -0.8081 8 7 0.3244 -2.4416 -1.7138 9 6 -0.1198 -3.8360 -1.7802 10 6 -1.5387 -3.8929 -2.3497 11 6 -2.5044 -3.2052 -1.3819 12 6 -3.9181 -3.2332 -1.9716 13 7 -4.2704 -4.6238 -2.2889 14 6 -5.4228 -5.1802 -1.8015 15 1 -5.8393 -4.8294 -0.8688 16 6 -6.0556 -6.1951 -2.5060 17 7 -5.7721 -6.3899 -3.7765 18 14 -7.3094 -7.2844 -1.6511 19 1 -8.6612 -6.6849 -1.7882 20 1 -7.3003 -8.6325 -2.2738 21 1 -6.9636 -7.4016 -0.2117 22 6 -3.3626 -5.4062 -3.1388 23 6 -1.9551 -5.3537 -2.5363 24 6 3.5470 -0.7069 -1.2576 25 6 4.2375 -0.1114 -2.3023 26 6 5.6232 -0.1178 -2.2658 27 6 6.2661 -0.7227 -1.2020 28 7 5.5768 -1.2837 -0.2280 29 6 4.2579 -1.2921 -0.2274 30 1 -0.3633 0.5750 -0.8518 31 1 -0.3633 -1.0252 -0.0721 32 1 -0.3634 0.4500 0.9238 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9563 0.8899 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9562 -0.8901 37 1 -0.2647 -1.7303 -2.0104 38 1 0.5535 -4.4016 -2.4243 39 1 -0.1129 -4.2676 -0.7792 40 1 -1.5643 -3.3822 -3.3124 41 1 -2.4980 -3.7305 -0.4270 42 1 -2.1938 -2.1714 -1.2311 43 1 -3.9470 -2.6324 -2.8806 44 1 -4.6267 -2.8331 -1.2464 45 1 -6.2145 -7.0988 -4.2690 46 1 -3.3462 -4.9827 -4.1430 47 1 -3.7022 -6.4410 -3.1843 48 1 -1.2534 -5.8491 -3.2072 49 1 -1.9533 -5.8587 -1.5703 50 1 3.7083 0.3499 -3.1231 51 1 6.1934 0.3398 -3.0607 52 1 7.3456 -0.7355 -1.1680 53 1 3.7276 -1.7619 0.5877 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331242222.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:39 Heat of formation + Delta-G solvation = -20.631752 kcal Electronic energy + Delta-G solvation = -30802.906974 eV Core-core repulsion = 26866.310107 eV Total energy + Delta-G solvation = -3936.596867 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.85147 -40.48682 -39.34784 -37.20254 -36.42734 -34.47045 -33.46853 -32.53833 -32.32152 -31.41593 -29.30395 -27.91130 -27.78470 -25.67524 -24.56833 -23.91591 -23.45495 -22.69456 -21.83919 -20.98990 -20.52753 -18.74639 -18.28811 -18.03441 -17.20293 -16.91923 -16.77789 -16.47996 -16.06839 -15.77461 -15.39187 -15.31029 -15.21414 -14.94140 -14.75472 -14.47158 -14.27440 -14.00452 -13.93331 -13.84312 -13.65049 -13.49750 -13.37475 -12.99694 -12.96698 -12.86612 -12.80043 -12.55518 -12.26741 -12.09271 -12.02155 -11.83810 -11.80284 -11.67994 -11.60405 -11.23019 -11.10003 -10.93477 -10.57062 -10.50626 -10.34941 -10.04521 -9.85405 -8.65607 -7.87427 -5.31418 0.18201 0.39865 1.45130 1.47557 1.56607 1.61246 2.19488 2.51323 2.92677 3.27297 3.41787 3.64797 3.72056 3.72679 3.85389 3.87257 3.95305 4.04114 4.09372 4.12340 4.13084 4.23991 4.36875 4.50214 4.53481 4.55146 4.66858 4.70553 4.71942 4.74682 4.82454 4.85038 4.91263 4.93742 5.02360 5.03173 5.04510 5.15158 5.21825 5.24280 5.29856 5.30929 5.32044 5.39618 5.43529 5.44064 5.47422 5.56017 5.66839 5.79339 5.82302 6.40490 6.56229 7.08366 7.16434 7.25089 7.89274 8.39654 9.18781 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.023644 B = 0.002092 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.943517 B =13384.202065 C =13914.483029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.077 4.077 3 C -0.138 4.138 4 C -0.050 4.050 5 H 0.132 0.868 6 C 0.517 3.483 7 O -0.579 6.579 8 N -0.710 5.710 9 C 0.136 3.864 10 C -0.077 4.077 11 C -0.113 4.113 12 C 0.140 3.860 13 N -0.612 5.612 14 C -0.261 4.261 15 H 0.064 0.936 16 C -0.051 4.051 17 N -0.934 5.934 18 Si 0.962 3.038 19 H -0.284 1.284 20 H -0.293 1.293 21 H -0.273 1.273 22 C 0.178 3.822 23 C -0.123 4.123 24 C -0.126 4.126 25 C -0.070 4.070 26 C -0.171 4.171 27 C 0.079 3.921 28 N -0.523 5.523 29 C 0.114 3.886 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.044 0.956 36 H 0.076 0.924 37 H 0.414 0.586 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.079 0.921 41 H 0.048 0.952 42 H 0.087 0.913 43 H 0.020 0.980 44 H 0.051 0.949 45 H 0.249 0.751 46 H 0.000 1.000 47 H 0.048 0.952 48 H 0.067 0.933 49 H 0.047 0.953 50 H 0.165 0.835 51 H 0.167 0.833 52 H 0.174 0.826 53 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.237 19.558 2.350 28.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.096 4.096 3 C -0.195 4.195 4 C -0.072 4.072 5 H 0.150 0.850 6 C 0.304 3.696 7 O -0.458 6.458 8 N -0.363 5.363 9 C 0.012 3.988 10 C -0.096 4.096 11 C -0.152 4.152 12 C 0.015 3.985 13 N -0.336 5.336 14 C -0.391 4.391 15 H 0.082 0.918 16 C -0.247 4.247 17 N -0.580 5.580 18 Si 0.791 3.209 19 H -0.210 1.210 20 H -0.220 1.220 21 H -0.198 1.198 22 C 0.052 3.948 23 C -0.162 4.162 24 C -0.128 4.128 25 C -0.096 4.096 26 C -0.190 4.190 27 C -0.077 4.077 28 N -0.233 5.233 29 C -0.042 4.042 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.252 0.748 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.106 0.894 43 H 0.038 0.962 44 H 0.070 0.930 45 H 0.058 0.942 46 H 0.018 0.982 47 H 0.066 0.934 48 H 0.085 0.915 49 H 0.066 0.934 50 H 0.183 0.817 51 H 0.185 0.815 52 H 0.191 0.809 53 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 21.101 18.418 3.243 28.195 hybrid contribution -1.619 -0.690 -0.482 1.825 sum 19.482 17.728 2.762 26.485 Atomic orbital electron populations 1.22097 0.93381 1.02554 1.03920 1.21027 0.96864 0.96938 0.94797 1.21774 1.00444 0.93988 1.03289 1.20379 0.91449 0.92092 1.03295 0.84973 1.20890 0.81042 0.91344 0.76299 1.90712 1.56892 1.50600 1.47632 1.46069 1.16211 1.09292 1.64724 1.21245 0.94445 0.82598 1.00514 1.21138 0.92468 0.96549 0.99422 1.21926 0.94896 1.00504 0.97840 1.21081 0.95127 0.85247 0.97087 1.44322 1.21485 1.08823 1.58947 1.19470 1.01354 1.16612 1.01671 0.91838 1.25761 1.00457 1.03039 0.95428 1.70176 1.46416 1.33583 1.07811 0.85358 0.79147 0.78165 0.78277 1.21029 1.21976 1.19780 1.20537 0.87384 0.96115 0.90717 1.21977 0.97521 0.96098 1.00635 1.20411 0.95358 1.00530 0.96518 1.21891 0.94786 0.95775 0.97155 1.22461 0.95261 1.00942 1.00361 1.23277 1.01527 0.93159 0.89768 1.67681 1.09175 1.17885 1.28513 1.22499 0.89567 0.94373 0.97787 0.89930 0.92875 0.91497 0.92360 0.91727 0.93655 0.90548 0.74751 0.92295 0.92848 0.90279 0.93349 0.89428 0.96229 0.93045 0.94173 0.98222 0.93372 0.91477 0.93369 0.81741 0.81515 0.80881 0.84810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 8.52 71.98 0.61 -1.26 16 2 C -0.08 -1.03 2.31 -10.80 -0.02 -1.06 16 3 C -0.14 -1.42 8.94 71.98 0.64 -0.77 16 4 C -0.05 -0.75 1.98 -12.29 -0.02 -0.78 16 5 H 0.13 1.14 7.93 -2.38 -0.02 1.12 16 6 C 0.52 11.52 6.29 87.66 0.55 12.07 16 7 O -0.58 -18.35 14.59 -3.03 -0.04 -18.39 16 8 N -0.71 -13.95 4.11 -463.05 -1.90 -15.86 16 9 C 0.14 3.43 5.07 86.38 0.44 3.87 16 10 C -0.08 -2.16 2.19 -10.77 -0.02 -2.18 16 11 C -0.11 -3.25 5.25 30.68 0.16 -3.09 16 12 C 0.14 5.33 6.52 86.37 0.56 5.90 16 13 N -0.61 -29.91 2.99 -699.12 -2.09 -32.00 16 14 C -0.26 -14.23 9.58 84.03 0.80 -13.43 16 15 H 0.06 3.39 7.89 -2.91 -0.02 3.37 16 16 C -0.05 -2.87 4.90 84.86 0.42 -2.46 16 17 N -0.93 -55.07 11.25 21.65 0.24 -54.83 16 18 Si 0.96 44.92 29.59 68.60 2.03 46.95 16 19 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 20 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 21 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 22 C 0.18 8.37 5.30 86.37 0.46 8.83 16 23 C -0.12 -4.39 5.36 30.67 0.16 -4.22 16 24 C -0.13 -2.28 3.35 -19.78 -0.07 -2.34 16 25 C -0.07 -0.93 9.81 22.47 0.22 -0.71 16 26 C -0.17 -2.15 10.11 22.36 0.23 -1.93 16 27 C 0.08 1.38 11.18 84.69 0.95 2.32 16 28 N -0.52 -12.90 10.36 -195.84 -2.03 -14.93 16 29 C 0.11 2.76 9.09 84.67 0.77 3.53 16 30 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 0.77 5.84 -2.38 -0.01 0.76 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 1.02 7.44 -2.38 -0.02 1.01 16 34 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16 35 H 0.04 0.57 7.20 -2.38 -0.02 0.56 16 36 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 37 H 0.41 5.88 6.68 -92.71 -0.62 5.26 16 38 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 41 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.09 1.84 7.15 -2.39 -0.02 1.82 16 43 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.05 1.95 7.93 -2.39 -0.02 1.93 16 45 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 46 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 47 H 0.05 2.61 6.10 -2.39 -0.01 2.60 16 48 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 49 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 50 H 0.17 1.06 8.00 -2.91 -0.02 1.04 16 51 H 0.17 0.93 8.06 -2.91 -0.02 0.90 16 52 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 53 H 0.13 3.62 6.93 -2.91 -0.02 3.60 16 Total: -1.00 -73.78 411.16 3.31 -70.47 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.27 Total: 16.30 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: 6.84 Total: 2.29 kcal Atomic # 7 Polarization: -111.84 SS G_CDS: -5.78 Total: -117.62 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.04 Total: -18.39 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -73.78 3.31 -70.47 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331242222.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.836 kcal (2) G-P(sol) polarization free energy of solvation -73.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds