Wall clock time and date at job start Wed Apr 1 2020 04:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46830 * 2 1 4 4 H 1.08996 * 109.46959 * 56.45266 * 3 2 1 5 5 C 1.50697 * 109.46870 * 176.44757 * 3 2 1 6 6 O 1.21280 * 120.00181 * 103.77056 * 5 3 2 7 7 N 1.34779 * 120.00073 * 283.77280 * 5 3 2 8 8 C 1.46963 * 120.59280 * 5.75847 * 7 5 3 9 9 C 1.53814 * 108.39911 * 124.76079 * 8 7 5 10 10 N 1.46964 * 108.58074 * 49.63508 * 9 8 7 11 11 C 1.36930 * 120.59504 * 124.66915 * 10 9 8 12 12 H 1.08001 * 120.00314 * 213.07637 * 11 10 9 13 13 C 1.38815 * 119.99663 * 33.07966 * 11 10 9 14 14 N 1.31617 * 120.00590 * 9.00051 * 13 11 10 15 15 Si 1.86809 * 119.99731 * 189.00251 * 13 11 10 16 16 H 1.48503 * 109.46873 * 59.99889 * 15 13 11 17 17 H 1.48496 * 109.46957 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47121 * 299.99812 * 15 13 11 19 19 C 1.46965 * 118.81143 * 304.64910 * 10 9 8 20 20 C 1.46964 * 120.59448 * 186.03761 * 7 5 3 21 21 N 1.46900 * 109.47095 * 296.44667 * 3 2 1 22 22 C 1.46900 * 111.00257 * 307.65622 * 21 3 2 23 23 C 1.46903 * 110.99765 * 183.70181 * 21 3 2 24 24 C 1.50699 * 109.46890 * 196.50006 * 23 21 3 25 25 C 1.38232 * 119.99648 * 269.72575 * 24 23 21 26 26 C 1.38236 * 119.99769 * 179.77295 * 25 24 23 27 27 C 1.38234 * 120.00097 * 0.49894 * 26 25 24 28 28 C 1.38235 * 119.99982 * 359.75705 * 27 26 25 29 29 C 1.38234 * 119.99891 * 359.97438 * 28 27 26 30 30 H 1.08998 * 109.46969 * 305.02324 * 1 2 3 31 31 H 1.09001 * 109.47498 * 65.02854 * 1 2 3 32 32 H 1.08999 * 109.46787 * 185.03028 * 1 2 3 33 33 H 1.09000 * 109.46807 * 240.00166 * 2 1 3 34 34 H 1.08999 * 109.46908 * 120.00106 * 2 1 3 35 35 H 1.09002 * 109.60958 * 244.54059 * 8 7 5 36 36 H 1.09002 * 109.61239 * 5.04787 * 8 7 5 37 37 H 1.09000 * 109.73777 * 289.84224 * 9 8 7 38 38 H 1.08998 * 109.53296 * 169.30544 * 9 8 7 39 39 H 0.96996 * 120.00424 * 179.97438 * 14 13 11 40 40 H 1.09002 * 109.60758 * 295.48153 * 19 10 9 41 41 H 1.08994 * 109.74779 * 175.05635 * 19 10 9 42 42 H 1.09004 * 109.61276 * 354.94368 * 20 7 5 43 43 H 1.08995 * 109.61025 * 115.46035 * 20 7 5 44 44 H 1.08998 * 109.46602 * 64.92680 * 22 21 3 45 45 H 1.08993 * 109.47183 * 184.93401 * 22 21 3 46 46 H 1.08999 * 109.46967 * 304.93415 * 22 21 3 47 47 H 1.08998 * 109.46751 * 316.49741 * 23 21 3 48 48 H 1.08996 * 109.46974 * 76.49665 * 23 21 3 49 49 H 1.07994 * 120.00239 * 359.97438 * 25 24 23 50 50 H 1.08002 * 120.00075 * 180.23263 * 26 25 24 51 51 H 1.08002 * 120.00064 * 179.72951 * 27 26 25 52 52 H 1.08000 * 120.00294 * 179.97438 * 28 27 26 53 53 H 1.08001 * 120.00447 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6256 1.9743 0.8565 5 6 3.5444 1.4435 0.0880 6 8 4.2095 1.6727 -0.8998 7 7 4.1508 1.1895 1.2646 8 6 3.3650 0.7868 2.4394 9 6 3.9267 -0.5447 2.9661 10 7 5.3848 -0.4181 3.0988 11 6 6.0009 -0.6760 4.2941 12 1 6.8840 -0.1225 4.5771 13 6 5.4903 -1.6492 5.1422 14 7 4.5267 -2.4440 4.7275 15 14 6.1709 -1.8307 6.8724 16 1 5.9699 -0.5628 7.6189 17 1 5.4617 -2.9331 7.5701 18 1 7.6217 -2.1400 6.8037 19 6 6.1700 -0.0100 1.9254 20 6 5.6089 1.3162 1.3973 21 7 1.6216 2.1098 -1.2400 22 6 2.0077 1.3217 -2.4181 23 6 2.1681 3.4713 -1.3154 24 6 1.4167 4.2571 -2.3590 25 6 1.8565 4.2624 -3.6695 26 6 1.1646 4.9794 -4.6277 27 6 0.0389 5.6993 -4.2735 28 6 -0.3978 5.6982 -2.9619 29 6 0.2909 4.9768 -2.0047 30 1 -0.3633 0.5898 0.8416 31 1 -0.3634 0.4338 -0.9316 32 1 -0.3633 -1.0237 0.0901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.4442 1.5515 3.2122 36 1 2.3207 0.6581 2.1545 37 1 3.6912 -1.3462 2.2659 38 1 3.4885 -0.7656 3.9394 39 1 4.1702 -3.1242 5.3199 40 1 6.0943 -0.7734 1.1511 41 1 7.2143 0.1215 2.2086 42 1 6.0471 1.5369 0.4239 43 1 5.8442 2.1176 2.0975 44 1 1.4652 0.3763 -2.4163 45 1 1.7649 1.8783 -3.3231 46 1 3.0795 1.1255 -2.3887 47 1 2.0618 3.9595 -0.3467 48 1 3.2231 3.4250 -1.5851 49 1 2.7386 3.7039 -3.9454 50 1 1.5060 4.9805 -5.6524 51 1 -0.4991 6.2629 -5.0213 52 1 -1.2770 6.2610 -2.6850 53 1 -0.0500 4.9762 -0.9799 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339279711.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:10 Heat of formation + Delta-G solvation = 18.002731 kcal Electronic energy + Delta-G solvation = -31702.005580 eV Core-core repulsion = 27767.084030 eV Total energy + Delta-G solvation = -3934.921550 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.83371 -40.15561 -38.90785 -37.54535 -35.78209 -34.54052 -33.15036 -31.93921 -31.80763 -31.68656 -29.44291 -28.27572 -27.62162 -25.48479 -24.81897 -24.21283 -23.36022 -22.68053 -21.92692 -21.51781 -20.03102 -18.81600 -18.04541 -17.66018 -17.39972 -16.90855 -16.49522 -16.37956 -16.21293 -15.93933 -15.49691 -15.36176 -15.24714 -15.23257 -14.98730 -14.63765 -14.26400 -14.23815 -13.96896 -13.55210 -13.39073 -13.33829 -13.14015 -13.12238 -12.82008 -12.71834 -12.64725 -12.49633 -12.45491 -12.26416 -12.08921 -12.01924 -11.90427 -11.78856 -11.71220 -11.65067 -11.59722 -11.17013 -10.60216 -9.80784 -9.75302 -9.66451 -9.13415 -8.59988 -7.88861 -5.44592 0.47129 0.56275 1.48784 1.49521 1.52907 1.56905 2.03627 2.49835 2.71869 3.16965 3.27199 3.46157 3.59022 3.80156 3.90548 4.00609 4.04834 4.21038 4.21948 4.23254 4.28817 4.33465 4.36842 4.45290 4.50807 4.53383 4.58537 4.64362 4.68344 4.72302 4.75394 4.78183 4.79312 4.85367 4.95243 5.04384 5.11210 5.16121 5.17514 5.22006 5.23879 5.24833 5.50803 5.53596 5.60768 5.61494 5.66146 5.67326 5.75669 5.88454 5.98532 6.17945 6.38094 6.48276 7.11330 7.13061 7.76392 8.32180 9.15368 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.022892 B = 0.002439 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.843467 B =11476.825469 C =11847.561513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.117 4.117 3 C 0.075 3.925 4 H 0.120 0.880 5 C 0.482 3.518 6 O -0.578 6.578 7 N -0.598 5.598 8 C 0.090 3.910 9 C 0.168 3.832 10 N -0.608 5.608 11 C -0.268 4.268 12 H 0.066 0.934 13 C -0.041 4.041 14 N -0.932 5.932 15 Si 0.970 3.030 16 H -0.275 1.275 17 H -0.293 1.293 18 H -0.279 1.279 19 C 0.134 3.866 20 C 0.105 3.895 21 N -0.492 5.492 22 C 0.006 3.994 23 C 0.085 3.915 24 C -0.082 4.082 25 C -0.126 4.126 26 C -0.128 4.128 27 C -0.127 4.127 28 C -0.126 4.126 29 C -0.110 4.110 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.107 0.893 37 H 0.000 1.000 38 H 0.076 0.924 39 H 0.253 0.747 40 H 0.005 0.995 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.039 0.961 47 H 0.078 0.922 48 H 0.044 0.956 49 H 0.112 0.888 50 H 0.136 0.864 51 H 0.143 0.857 52 H 0.142 0.858 53 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.016 13.875 -13.844 22.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.155 4.155 3 C -0.037 4.037 4 H 0.137 0.863 5 C 0.271 3.729 6 O -0.459 6.459 7 N -0.330 5.330 8 C -0.034 4.034 9 C 0.042 3.958 10 N -0.332 5.332 11 C -0.398 4.398 12 H 0.083 0.917 13 C -0.238 4.238 14 N -0.577 5.577 15 Si 0.798 3.202 16 H -0.200 1.200 17 H -0.219 1.219 18 H -0.205 1.205 19 C 0.008 3.992 20 C -0.020 4.020 21 N -0.214 5.214 22 C -0.142 4.142 23 C -0.042 4.042 24 C -0.082 4.082 25 C -0.145 4.145 26 C -0.146 4.146 27 C -0.145 4.145 28 C -0.143 4.143 29 C -0.129 4.129 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.125 0.875 37 H 0.018 0.982 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.023 0.977 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.058 0.942 47 H 0.096 0.904 48 H 0.062 0.938 49 H 0.130 0.870 50 H 0.154 0.846 51 H 0.160 0.840 52 H 0.160 0.840 53 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.249 13.882 -14.242 23.358 hybrid contribution 1.759 -0.789 0.989 2.167 sum -10.490 13.093 -13.253 21.380 Atomic orbital electron populations 1.21579 0.92313 1.01911 1.03001 1.21685 0.98950 0.92343 1.02564 1.22051 0.87489 0.98497 0.95704 0.86266 1.22528 0.92749 0.75600 0.82051 1.90552 1.67658 1.52117 1.35593 1.48303 1.07889 1.65824 1.10978 1.22696 0.95705 0.98125 0.86828 1.21061 0.83773 0.91559 0.99423 1.44167 1.02305 1.79930 1.06761 1.19425 1.11271 1.14097 0.95039 0.91680 1.25943 0.99491 0.95261 1.03065 1.70073 1.30095 1.21055 1.36495 0.85312 0.77819 0.77209 0.79849 1.20030 1.21922 1.20528 1.21317 0.95679 0.93302 0.88939 1.21970 0.80615 0.98308 1.01071 1.62585 1.56209 1.01494 1.01086 1.22681 1.00253 0.98341 0.92911 1.21124 0.96437 0.88573 0.98041 1.19744 0.96503 0.97756 0.94201 1.21171 1.00272 0.99905 0.93153 1.21365 0.96068 0.97347 0.99827 1.21461 0.96733 0.99342 0.96946 1.21442 1.00371 0.99266 0.93253 1.21207 0.94494 0.96710 1.00474 0.91673 0.91732 0.92245 0.92106 0.91273 0.91298 0.87536 0.98236 0.90577 0.93778 0.97736 0.91208 0.89962 0.91270 0.90911 0.91097 0.94204 0.90400 0.93792 0.86998 0.84605 0.83966 0.84005 0.85258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 9.68 71.98 0.70 -1.87 16 2 C -0.12 -2.89 4.53 30.60 0.14 -2.75 16 3 C 0.07 1.91 1.37 44.17 0.06 1.97 16 4 H 0.12 2.70 7.29 -2.39 -0.02 2.69 16 5 C 0.48 15.68 6.25 87.66 0.55 16.23 16 6 O -0.58 -21.51 11.34 -3.03 -0.03 -21.55 16 7 N -0.60 -20.60 2.94 -817.15 -2.40 -23.00 16 8 C 0.09 3.05 5.80 86.57 0.50 3.55 16 9 C 0.17 7.53 5.46 86.57 0.47 8.00 16 10 N -0.61 -29.57 2.95 -697.35 -2.06 -31.63 16 11 C -0.27 -14.17 9.57 84.04 0.80 -13.36 16 12 H 0.07 3.36 7.84 -2.91 -0.02 3.33 16 13 C -0.04 -2.21 5.08 84.86 0.43 -1.78 16 14 N -0.93 -52.40 11.05 21.65 0.24 -52.16 16 15 Si 0.97 43.02 29.56 68.60 2.03 45.05 16 16 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 17 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 18 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 19 C 0.13 5.67 6.67 86.42 0.58 6.25 16 20 C 0.10 3.79 6.60 86.42 0.57 4.36 16 21 N -0.49 -12.05 4.24 -906.06 -3.84 -15.90 16 22 C 0.01 0.15 8.43 127.69 1.08 1.23 16 23 C 0.09 2.13 4.37 85.56 0.37 2.51 16 24 C -0.08 -1.83 5.07 -19.87 -0.10 -1.93 16 25 C -0.13 -2.72 8.13 22.27 0.18 -2.54 16 26 C -0.13 -2.26 10.05 22.27 0.22 -2.03 16 27 C -0.13 -1.97 10.05 22.27 0.22 -1.74 16 28 C -0.13 -2.02 10.05 22.27 0.22 -1.80 16 29 C -0.11 -2.13 9.70 22.27 0.22 -1.91 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 1.27 7.69 -2.39 -0.02 1.25 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.06 1.61 6.21 -2.39 -0.01 1.60 16 34 H 0.07 1.89 6.10 -2.39 -0.01 1.88 16 35 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.11 2.94 4.41 -2.39 -0.01 2.93 16 37 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 38 H 0.08 3.80 6.09 -2.39 -0.01 3.78 16 39 H 0.25 13.82 8.31 -92.71 -0.77 13.04 16 40 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 41 H 0.07 2.82 7.94 -2.39 -0.02 2.81 16 42 H 0.08 2.94 6.99 -2.38 -0.02 2.93 16 43 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.07 1.73 6.24 -2.39 -0.01 1.71 16 45 H 0.07 1.71 5.77 -2.39 -0.01 1.69 16 46 H 0.04 1.25 5.43 -2.39 -0.01 1.23 16 47 H 0.08 1.84 7.93 -2.39 -0.02 1.82 16 48 H 0.04 1.33 6.10 -2.39 -0.01 1.32 16 49 H 0.11 2.49 7.75 -2.91 -0.02 2.47 16 50 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 51 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 52 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 53 H 0.13 2.18 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -63.29 399.44 2.04 -61.25 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 0.89 Total: 25.55 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: 7.22 Total: 12.38 kcal Atomic # 7 Polarization: -114.62 SS G_CDS: -8.07 Total: -122.69 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.03 Total: -21.55 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -63.29 2.04 -61.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339279711.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.256 kcal (2) G-P(sol) polarization free energy of solvation -63.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds