Wall clock time and date at job start Wed Apr 1 2020 04:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47015 * 2 1 4 4 H 1.09002 * 109.47076 * 308.01669 * 3 2 1 5 5 C 1.50699 * 109.46571 * 188.01491 * 3 2 1 6 6 O 1.21278 * 120.00024 * 256.10743 * 5 3 2 7 7 N 1.34777 * 119.99822 * 76.11539 * 5 3 2 8 8 C 1.46961 * 120.59601 * 3.55027 * 7 5 3 9 9 C 1.53815 * 108.39593 * 124.76206 * 8 7 5 10 10 N 1.46968 * 108.57802 * 49.63996 * 9 8 7 11 11 C 1.36940 * 120.59166 * 124.62801 * 10 9 8 12 12 H 1.07997 * 119.99824 * 211.45458 * 11 10 9 13 13 C 1.38809 * 120.00026 * 31.45374 * 11 10 9 14 14 N 1.31612 * 120.00471 * 11.76482 * 13 11 10 15 15 Si 1.86805 * 119.99682 * 191.76564 * 13 11 10 16 16 H 1.48501 * 109.46843 * 60.00026 * 15 13 11 17 17 H 1.48503 * 109.46956 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47046 * 300.00084 * 15 13 11 19 19 C 1.46962 * 118.81268 * 304.64228 * 10 9 8 20 20 C 1.46968 * 120.59173 * 183.83781 * 7 5 3 21 21 N 1.46894 * 109.47056 * 68.01624 * 3 2 1 22 22 C 1.46899 * 111.00508 * 42.12415 * 21 3 2 23 23 C 1.46905 * 111.00271 * 278.16659 * 21 3 2 24 24 C 1.50698 * 109.47255 * 209.05262 * 23 21 3 25 25 C 1.38238 * 119.99645 * 269.72812 * 24 23 21 26 26 C 1.38234 * 119.99618 * 179.77028 * 25 24 23 27 27 C 1.38229 * 120.00195 * 0.50216 * 26 25 24 28 28 C 1.38236 * 120.00184 * 359.74746 * 27 26 25 29 29 C 1.38229 * 120.00302 * 90.00056 * 24 23 21 30 30 H 1.09002 * 109.46901 * 283.91823 * 1 2 3 31 31 H 1.09005 * 109.47047 * 43.91496 * 1 2 3 32 32 H 1.09000 * 109.46840 * 163.91368 * 1 2 3 33 33 H 1.08999 * 109.46898 * 239.99436 * 2 1 3 34 34 H 1.09000 * 109.46876 * 119.99866 * 2 1 3 35 35 H 1.08996 * 109.61291 * 244.54140 * 8 7 5 36 36 H 1.09001 * 109.61142 * 5.06050 * 8 7 5 37 37 H 1.08998 * 109.74009 * 289.84990 * 9 8 7 38 38 H 1.08999 * 109.53255 * 169.30276 * 9 8 7 39 39 H 0.96999 * 120.00427 * 180.02562 * 14 13 11 40 40 H 1.09000 * 109.61442 * 295.48776 * 19 10 9 41 41 H 1.08999 * 109.61052 * 174.97136 * 19 10 9 42 42 H 1.08999 * 109.60840 * 354.94215 * 20 7 5 43 43 H 1.08998 * 109.61223 * 115.45695 * 20 7 5 44 44 H 1.09000 * 109.47126 * 296.05061 * 22 21 3 45 45 H 1.09000 * 109.47075 * 56.04382 * 22 21 3 46 46 H 1.08993 * 109.47705 * 176.04340 * 22 21 3 47 47 H 1.09000 * 109.46805 * 329.05273 * 23 21 3 48 48 H 1.08995 * 109.46567 * 89.04761 * 23 21 3 49 49 H 1.08003 * 120.00495 * 359.97438 * 25 24 23 50 50 H 1.08004 * 119.99806 * 180.22660 * 26 25 24 51 51 H 1.08005 * 120.00741 * 179.72738 * 27 26 25 52 52 H 1.07996 * 120.00627 * 179.97438 * 28 27 26 53 53 H 1.08006 * 119.99630 * 359.97438 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5644 1.9960 -0.8096 5 6 3.5339 1.4470 -0.1981 6 8 4.2699 1.6534 0.7435 7 7 4.0521 1.2219 -1.4218 8 6 3.1725 1.0477 -2.5861 9 6 3.5826 2.0683 -3.6613 10 7 5.0372 1.9864 -3.8541 11 6 5.5637 1.7568 -5.0972 12 1 6.4911 1.2128 -5.1988 13 6 4.9053 2.2231 -6.2267 14 7 3.9107 3.0762 -6.1035 15 14 5.4309 1.6398 -7.9217 16 1 5.2848 0.1643 -8.0047 17 1 4.5756 2.2803 -8.9529 18 1 6.8499 2.0106 -8.1548 19 6 5.9167 2.1550 -2.6888 20 6 5.5068 1.1400 -1.6145 21 7 1.7145 2.0770 1.2842 22 6 1.9626 1.1582 2.4033 23 6 0.3267 2.5589 1.2966 24 6 0.2170 3.7508 2.2121 25 6 -0.0835 3.5699 3.5493 26 6 -0.1794 4.6629 4.3901 27 6 0.0148 5.9375 3.8917 28 6 0.3102 6.1188 2.5535 29 6 0.4113 5.0254 1.7138 30 1 -0.3633 0.2472 0.9975 31 1 -0.3633 0.7403 -0.7128 32 1 -0.3633 -0.9874 -0.2848 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.2802 0.0363 -2.9779 36 1 2.1373 1.2203 -2.2916 37 1 3.3125 3.0733 -3.3370 38 1 3.0758 1.8347 -4.5976 39 1 3.4503 3.4018 -6.8928 40 1 5.8128 3.1662 -2.2953 41 1 6.9514 1.9787 -2.9828 42 1 6.0136 1.3736 -0.6782 43 1 5.7769 0.1350 -1.9388 44 1 1.2943 0.3008 2.3245 45 1 2.9972 0.8166 2.3704 46 1 1.7806 1.6754 3.3453 47 1 0.0335 2.8478 0.2873 48 1 -0.3302 1.7654 1.6527 49 1 -0.2400 2.5744 3.9377 50 1 -0.4106 4.5213 5.4355 51 1 -0.0645 6.7918 4.5477 52 1 0.4616 7.1146 2.1640 53 1 0.6422 5.1670 0.6682 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339279718.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:15 Heat of formation + Delta-G solvation = 20.779966 kcal Electronic energy + Delta-G solvation = -31608.739225 eV Core-core repulsion = 27673.938105 eV Total energy + Delta-G solvation = -3934.801120 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.58128 -40.20489 -38.95245 -37.94793 -35.62859 -34.08605 -33.08707 -31.95282 -31.85501 -31.70943 -29.45696 -28.20790 -28.05726 -25.48734 -24.67189 -24.14477 -23.36663 -22.89938 -21.86348 -21.33654 -20.02007 -18.81044 -17.98515 -17.72097 -17.13090 -16.94196 -16.60792 -16.25310 -16.12126 -15.96973 -15.46808 -15.39672 -15.33678 -15.11322 -14.95259 -14.74941 -14.23315 -14.08371 -13.94631 -13.56623 -13.40951 -13.34826 -13.20840 -13.12184 -12.84684 -12.71396 -12.58914 -12.56173 -12.46624 -12.31953 -12.23974 -12.00762 -11.94767 -11.84662 -11.79849 -11.66215 -11.60834 -10.65377 -10.51681 -9.77356 -9.75028 -9.63391 -9.12712 -8.60454 -7.87398 -5.41056 0.48153 0.56926 1.50033 1.50612 1.57846 1.67956 2.01030 2.51033 2.79488 3.24369 3.27986 3.51814 3.59639 3.75580 3.88048 4.02349 4.03225 4.20657 4.22549 4.24896 4.32482 4.33534 4.34152 4.39353 4.40300 4.50122 4.57240 4.62732 4.66951 4.67270 4.74289 4.76108 4.81672 4.82414 4.84017 5.06053 5.07085 5.09914 5.14434 5.18372 5.21481 5.24056 5.37088 5.55290 5.61455 5.62011 5.67562 5.68033 5.75479 5.99814 6.12871 6.20272 6.38156 6.56463 7.12439 7.27455 7.78165 8.33558 9.16991 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.014772 B = 0.002665 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.005174 B =10502.461639 C =11033.283439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.148 4.148 3 C 0.076 3.924 4 H 0.106 0.894 5 C 0.515 3.485 6 O -0.572 6.572 7 N -0.603 5.603 8 C 0.098 3.902 9 C 0.165 3.835 10 N -0.608 5.608 11 C -0.267 4.267 12 H 0.067 0.933 13 C -0.044 4.044 14 N -0.933 5.933 15 Si 0.971 3.029 16 H -0.274 1.274 17 H -0.294 1.294 18 H -0.279 1.279 19 C 0.133 3.867 20 C 0.108 3.892 21 N -0.531 5.531 22 C 0.028 3.972 23 C 0.092 3.908 24 C -0.084 4.084 25 C -0.119 4.119 26 C -0.128 4.128 27 C -0.131 4.131 28 C -0.134 4.134 29 C -0.122 4.122 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.101 0.899 37 H -0.005 1.005 38 H 0.076 0.924 39 H 0.252 0.748 40 H 0.004 0.996 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.050 0.950 45 H 0.056 0.944 46 H 0.069 0.931 47 H 0.082 0.918 48 H 0.077 0.923 49 H 0.134 0.866 50 H 0.142 0.858 51 H 0.139 0.861 52 H 0.130 0.870 53 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.863 -3.810 17.946 22.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.187 4.187 3 C -0.036 4.036 4 H 0.124 0.876 5 C 0.304 3.696 6 O -0.452 6.452 7 N -0.336 5.336 8 C -0.026 4.026 9 C 0.039 3.961 10 N -0.332 5.332 11 C -0.397 4.397 12 H 0.085 0.915 13 C -0.239 4.239 14 N -0.579 5.579 15 Si 0.798 3.202 16 H -0.200 1.200 17 H -0.220 1.220 18 H -0.205 1.205 19 C 0.007 3.993 20 C -0.016 4.016 21 N -0.254 5.254 22 C -0.120 4.120 23 C -0.034 4.034 24 C -0.085 4.085 25 C -0.137 4.137 26 C -0.146 4.146 27 C -0.149 4.149 28 C -0.152 4.152 29 C -0.140 4.140 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.119 0.881 37 H 0.013 0.987 38 H 0.095 0.905 39 H 0.061 0.939 40 H 0.022 0.978 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.088 0.912 47 H 0.100 0.900 48 H 0.095 0.905 49 H 0.152 0.848 50 H 0.160 0.840 51 H 0.157 0.843 52 H 0.148 0.852 53 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.240 -3.225 18.350 22.292 hybrid contribution 0.217 -0.287 -1.399 1.445 sum -12.023 -3.512 16.951 21.076 Atomic orbital electron populations 1.21997 0.92899 1.03293 1.02663 1.22148 0.98423 0.94427 1.03745 1.21760 0.91011 0.96933 0.93883 0.87590 1.21049 0.91616 0.75244 0.81677 1.90588 1.62549 1.50562 1.41464 1.48116 1.07418 1.70317 1.07738 1.22576 0.93825 1.00358 0.85842 1.21090 0.84528 0.93711 0.96798 1.44196 1.01474 1.83788 1.03698 1.19461 1.08064 1.28538 0.83610 0.91511 1.25896 0.99370 0.97004 1.01672 1.70104 1.25697 1.32863 1.29216 0.85305 0.77457 0.78054 0.79339 1.19999 1.21987 1.20524 1.21342 0.95049 0.95021 0.87926 1.21948 0.80738 0.99830 0.99120 1.61597 1.23208 1.39039 1.01551 1.22492 1.01379 0.94747 0.93365 1.21377 0.88091 0.94724 0.99254 1.19943 0.99021 0.94504 0.94986 1.21258 0.99964 0.99720 0.92788 1.21429 0.99993 0.92536 1.00625 1.21431 0.99785 0.98162 0.95488 1.21390 1.00201 0.99163 0.94485 1.21200 0.99694 0.92954 1.00170 0.91521 0.91764 0.90992 0.90795 0.90635 0.91051 0.88064 0.98655 0.90543 0.93853 0.97847 0.91074 0.89994 0.91082 0.93129 0.92564 0.91234 0.90007 0.90540 0.84847 0.84048 0.84335 0.85224 0.86848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 8.55 71.98 0.62 -1.55 16 2 C -0.15 -2.93 4.59 30.60 0.14 -2.79 16 3 C 0.08 1.94 1.46 44.17 0.06 2.01 16 4 H 0.11 2.66 5.81 -2.39 -0.01 2.64 16 5 C 0.52 17.69 6.86 87.66 0.60 18.29 16 6 O -0.57 -23.24 14.15 -3.02 -0.04 -23.28 16 7 N -0.60 -21.35 2.94 -817.15 -2.40 -23.76 16 8 C 0.10 3.34 5.61 86.57 0.49 3.82 16 9 C 0.17 7.53 5.48 86.57 0.47 8.00 16 10 N -0.61 -29.97 2.96 -697.34 -2.06 -32.04 16 11 C -0.27 -14.20 9.57 84.03 0.80 -13.40 16 12 H 0.07 3.46 7.86 -2.91 -0.02 3.44 16 13 C -0.04 -2.34 5.02 84.86 0.43 -1.91 16 14 N -0.93 -53.02 11.09 21.65 0.24 -52.78 16 15 Si 0.97 43.23 29.57 68.60 2.03 45.26 16 16 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 17 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 18 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 19 C 0.13 5.74 6.67 86.42 0.58 6.31 16 20 C 0.11 3.99 6.60 86.42 0.57 4.56 16 21 N -0.53 -13.24 4.24 -906.06 -3.84 -17.08 16 22 C 0.03 0.63 7.95 127.69 1.02 1.64 16 23 C 0.09 1.81 3.83 85.56 0.33 2.14 16 24 C -0.08 -1.82 5.32 -19.87 -0.11 -1.93 16 25 C -0.12 -2.22 8.79 22.27 0.20 -2.02 16 26 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 27 C -0.13 -2.37 10.05 22.27 0.22 -2.15 16 28 C -0.13 -2.82 10.05 22.27 0.22 -2.60 16 29 C -0.12 -2.86 9.70 22.27 0.22 -2.65 16 30 H 0.07 0.85 4.93 -2.39 -0.01 0.84 16 31 H 0.06 0.90 7.78 -2.38 -0.02 0.88 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 1.52 7.02 -2.39 -0.02 1.50 16 34 H 0.08 1.53 5.91 -2.39 -0.01 1.52 16 35 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.10 2.80 5.21 -2.39 -0.01 2.79 16 37 H 0.00 -0.24 8.14 -2.39 -0.02 -0.25 16 38 H 0.08 3.85 6.05 -2.39 -0.01 3.84 16 39 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 40 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 41 H 0.07 2.92 7.93 -2.39 -0.02 2.90 16 42 H 0.08 3.03 6.99 -2.39 -0.02 3.01 16 43 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 44 H 0.05 0.90 5.39 -2.39 -0.01 0.89 16 45 H 0.06 1.60 6.41 -2.39 -0.02 1.59 16 46 H 0.07 1.49 6.91 -2.39 -0.02 1.47 16 47 H 0.08 1.57 7.23 -2.39 -0.02 1.55 16 48 H 0.08 1.18 5.37 -2.39 -0.01 1.16 16 49 H 0.13 1.94 7.82 -2.91 -0.02 1.92 16 50 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 51 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 52 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 53 H 0.11 2.73 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -67.69 398.26 1.90 -65.79 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 0.90 Total: 24.07 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: 7.08 Total: 13.81 kcal Atomic # 7 Polarization: -117.59 SS G_CDS: -8.06 Total: -125.66 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.04 Total: -23.28 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -67.69 1.90 -65.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339279718.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.573 kcal (2) G-P(sol) polarization free energy of solvation -67.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds