Wall clock time and date at job start Wed Apr 1 2020 04:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47171 * 2 1 4 4 H 1.09005 * 109.46636 * 304.99817 * 3 2 1 5 5 C 1.52999 * 109.47066 * 184.99583 * 3 2 1 6 6 N 1.46503 * 109.46954 * 66.23005 * 5 3 2 7 7 C 1.34776 * 119.99762 * 175.23273 * 6 5 3 8 8 O 1.21591 * 119.99936 * 359.97438 * 7 6 5 9 9 N 1.34767 * 120.00034 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00089 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47371 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47589 * 179.97438 * 11 10 9 13 13 H 1.08008 * 119.99474 * 359.97438 * 12 11 10 14 14 C 1.37867 * 120.00368 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00296 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 120.00142 * 0.02562 * 14 12 11 17 17 H 1.48493 * 109.47348 * 89.99685 * 16 14 12 18 18 H 1.48496 * 109.47317 * 210.00162 * 16 14 12 19 19 H 1.48504 * 109.46997 * 329.99892 * 16 14 12 20 20 N 1.46900 * 109.46972 * 64.99213 * 3 2 1 21 21 C 1.47162 * 110.99707 * 190.58867 * 20 3 2 22 22 C 1.52898 * 108.50878 * 165.32772 * 21 20 3 23 23 C 1.50716 * 109.95600 * 50.40391 * 22 21 20 24 24 C 1.38673 * 118.48591 * 163.30188 * 23 22 21 25 25 C 1.38034 * 120.35093 * 179.60650 * 24 23 22 26 26 C 1.38264 * 119.82417 * 359.97438 * 25 24 23 27 27 C 1.38016 * 119.87123 * 0.07817 * 26 25 24 28 28 C 1.37831 * 121.66123 * 343.04711 * 23 22 21 29 29 C 1.46633 * 110.99755 * 67.59683 * 20 3 2 30 30 H 1.09002 * 109.46683 * 60.00940 * 1 2 3 31 31 H 1.09001 * 109.46792 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47736 * 300.00636 * 1 2 3 33 33 H 1.08992 * 109.47736 * 239.99364 * 2 1 3 34 34 H 1.09002 * 109.46683 * 119.99060 * 2 1 3 35 35 H 1.08995 * 109.47268 * 306.22562 * 5 3 2 36 36 H 1.08998 * 109.46909 * 186.22676 * 5 3 2 37 37 H 0.96997 * 120.00175 * 354.95956 * 6 5 3 38 38 H 0.96997 * 120.00384 * 0.02562 * 9 7 6 39 39 H 1.09007 * 109.47083 * 299.99641 * 10 9 7 40 40 H 1.08995 * 109.47429 * 60.00071 * 10 9 7 41 41 H 1.09006 * 109.47051 * 299.99960 * 11 10 9 42 42 H 1.09002 * 109.47260 * 59.99697 * 11 10 9 43 43 H 0.96998 * 120.00505 * 180.02562 * 15 14 12 44 44 H 1.09003 * 109.63010 * 285.03371 * 21 20 3 45 45 H 1.09002 * 109.63130 * 45.61774 * 21 20 3 46 46 H 1.09004 * 109.38639 * 290.25708 * 22 21 20 47 47 H 1.08998 * 109.30925 * 170.50856 * 22 21 20 48 48 H 1.08000 * 119.82448 * 359.56301 * 24 23 22 49 49 H 1.07997 * 120.08783 * 179.97438 * 25 24 23 50 50 H 1.08003 * 120.06393 * 180.02562 * 26 25 24 51 51 H 1.07999 * 119.81074 * 179.97438 * 27 26 25 52 52 H 1.09003 * 109.27262 * 296.20445 * 29 20 3 53 53 H 1.08998 * 109.27160 * 55.71953 * 29 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5649 1.4443 -0.1256 6 7 3.9471 0.9251 -1.4412 7 6 5.2420 0.9234 -1.8146 8 8 6.0930 1.3531 -1.0599 9 7 5.5937 0.4453 -3.0246 10 6 7.0014 0.4428 -3.4303 11 6 7.1259 -0.1470 -4.8366 12 6 8.5738 -0.1489 -5.2543 13 1 9.3297 0.2328 -4.5839 14 6 8.9336 -0.6379 -6.4921 15 7 10.1972 -0.6401 -6.8564 16 14 7.6262 -1.2975 -7.6519 17 1 7.1232 -0.1944 -8.5095 18 1 8.2133 -2.3606 -8.5065 19 1 6.5026 -1.8618 -6.8617 20 7 1.6512 2.0993 1.2552 21 6 1.8998 3.5484 1.1910 22 6 1.1546 4.2202 2.3448 23 6 1.4732 3.5192 3.6404 24 6 1.1895 4.1699 4.8316 25 6 1.4580 3.5602 6.0406 26 6 2.0122 2.2937 6.0639 27 6 2.2958 1.6456 4.8789 28 6 2.0288 2.2580 3.6630 29 6 2.3603 1.5127 2.3967 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8898 33 1 1.8934 -0.5139 -0.8898 34 1 1.8933 -0.5137 0.8901 35 1 3.9943 0.8137 0.6527 36 1 3.9373 2.4627 -0.0148 37 1 3.2686 0.5790 -2.0418 38 1 4.9149 0.1027 -3.6268 39 1 7.3813 1.4646 -3.4304 40 1 7.5802 -0.1600 -2.7307 41 1 6.7458 -1.1686 -4.8371 42 1 6.5471 0.4562 -5.5362 43 1 10.4504 -0.9837 -7.7275 44 1 2.9687 3.7410 1.2839 45 1 1.5353 3.9408 0.2417 46 1 0.0815 4.1699 2.1604 47 1 1.4616 5.2638 2.4130 48 1 0.7569 5.1593 4.8134 49 1 1.2358 4.0711 6.9658 50 1 2.2234 1.8129 7.0077 51 1 2.7291 0.6565 4.8983 52 1 2.0651 0.4690 2.5058 53 1 3.4344 1.5661 2.2191 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343655270.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:57 Heat of formation + Delta-G solvation = -35.368286 kcal Electronic energy + Delta-G solvation = -29814.769965 eV Core-core repulsion = 25877.534074 eV Total energy + Delta-G solvation = -3937.235891 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.51271 -40.85875 -39.16128 -36.76870 -36.03819 -34.84217 -34.45567 -33.30752 -32.13138 -31.87586 -30.12134 -28.91567 -26.76201 -25.84644 -24.76464 -23.83396 -23.07678 -22.67668 -22.06471 -21.51570 -20.11460 -19.38364 -18.91303 -17.92531 -17.34298 -16.83569 -16.67107 -16.42978 -16.29279 -16.06925 -15.57008 -15.50716 -15.39648 -15.38215 -14.88850 -14.68430 -14.59530 -14.51314 -14.26837 -13.99682 -13.74759 -13.52697 -13.34213 -13.06653 -12.99472 -12.87052 -12.79566 -12.31678 -12.21624 -12.15620 -12.12601 -11.90667 -11.75338 -11.70515 -11.55013 -11.44240 -11.40920 -11.33686 -10.78246 -10.40209 -9.78333 -9.76540 -9.49136 -9.26243 -8.29235 -6.36754 0.45646 0.49131 1.39789 1.42740 1.53939 1.68875 2.13439 2.37679 2.76159 2.87025 3.05774 3.37881 3.60672 3.67373 3.79402 3.92225 4.03877 4.14306 4.19293 4.27962 4.30249 4.34189 4.41096 4.44626 4.48826 4.51943 4.56434 4.62913 4.64764 4.72081 4.75786 4.81612 4.90442 4.93673 5.00893 5.08450 5.13576 5.14650 5.22557 5.24376 5.33784 5.40878 5.41880 5.44549 5.54941 5.59842 5.63145 5.66363 5.68574 5.97523 6.00431 6.03208 6.16784 6.23640 6.70523 7.12469 7.27702 7.57956 8.87573 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.020625 B = 0.001784 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.228556 B =15692.126794 C =16261.364289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 C 0.084 3.916 4 H 0.107 0.893 5 C 0.112 3.888 6 N -0.724 5.724 7 C 0.697 3.303 8 O -0.644 6.644 9 N -0.730 5.730 10 C 0.164 3.836 11 C -0.011 4.011 12 C -0.540 4.540 13 H 0.027 0.973 14 C 0.003 3.997 15 N -0.951 5.951 16 Si 0.961 3.039 17 H -0.265 1.265 18 H -0.287 1.287 19 H -0.235 1.235 20 N -0.508 5.508 21 C 0.043 3.957 22 C -0.071 4.071 23 C -0.084 4.084 24 C -0.130 4.130 25 C -0.129 4.129 26 C -0.132 4.132 27 C -0.130 4.130 28 C -0.094 4.094 29 C 0.086 3.914 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.048 0.952 37 H 0.413 0.587 38 H 0.411 0.589 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.038 0.962 42 H 0.037 0.963 43 H 0.268 0.732 44 H 0.028 0.972 45 H 0.096 0.904 46 H 0.091 0.909 47 H 0.089 0.911 48 H 0.137 0.863 49 H 0.140 0.860 50 H 0.138 0.862 51 H 0.129 0.871 52 H 0.096 0.904 53 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.070 6.028 21.685 37.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.152 4.152 3 C -0.025 4.025 4 H 0.125 0.875 5 C -0.014 4.014 6 N -0.382 5.382 7 C 0.396 3.604 8 O -0.526 6.526 9 N -0.385 5.385 10 C 0.040 3.960 11 C -0.049 4.049 12 C -0.578 4.578 13 H 0.046 0.954 14 C -0.194 4.194 15 N -0.591 5.591 16 Si 0.783 3.217 17 H -0.190 1.190 18 H -0.213 1.213 19 H -0.158 1.158 20 N -0.230 5.230 21 C -0.084 4.084 22 C -0.108 4.108 23 C -0.084 4.084 24 C -0.148 4.148 25 C -0.146 4.146 26 C -0.150 4.150 27 C -0.148 4.148 28 C -0.094 4.094 29 C -0.041 4.041 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.251 0.749 38 H 0.248 0.752 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.077 0.923 44 H 0.046 0.954 45 H 0.114 0.886 46 H 0.109 0.891 47 H 0.108 0.892 48 H 0.155 0.845 49 H 0.158 0.842 50 H 0.155 0.845 51 H 0.147 0.853 52 H 0.114 0.886 53 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -29.716 6.306 22.309 37.689 hybrid contribution 1.041 -0.395 -0.997 1.495 sum -28.674 5.911 21.312 36.213 Atomic orbital electron populations 1.21589 0.94199 1.01298 1.02354 1.21605 0.97406 0.93710 1.02475 1.22074 0.89712 0.97492 0.93233 0.87527 1.21938 0.97534 0.98299 0.83649 1.44787 1.05555 1.68192 1.19655 1.16199 0.83457 0.78737 0.82005 1.90886 1.51308 1.55536 1.54892 1.45091 1.09917 1.66934 1.16586 1.20868 0.79692 0.99401 0.96062 1.19643 0.95528 0.97305 0.92404 1.21255 0.92964 1.41856 1.01774 0.95437 1.26097 0.98002 0.95350 0.99939 1.70077 1.18933 1.48023 1.22047 0.85514 0.79385 0.78494 0.78319 1.18987 1.21324 1.15825 1.62657 1.55341 1.03410 1.01615 1.22300 0.98155 0.87742 1.00224 1.20546 1.01605 0.98680 0.89956 1.19839 0.98459 0.94050 0.96050 1.21372 1.00762 1.00774 0.91925 1.21405 0.99062 0.95540 0.98630 1.21337 0.99519 0.95702 0.98462 1.21270 1.00712 1.00703 0.92134 1.19723 1.00134 0.94841 0.94706 1.21052 0.96062 0.98978 0.88045 0.92371 0.92916 0.92454 0.90674 0.92191 0.92976 0.93330 0.74905 0.75246 0.94226 0.94226 0.94356 0.94495 0.92344 0.95406 0.88572 0.89094 0.89232 0.84492 0.84229 0.84451 0.85333 0.88617 0.94049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.80 71.98 0.71 -0.78 16 2 C -0.11 -1.34 5.28 30.60 0.16 -1.18 16 3 C 0.08 1.13 1.81 44.92 0.08 1.21 16 4 H 0.11 1.20 7.87 -2.38 -0.02 1.18 16 5 C 0.11 2.28 4.14 86.38 0.36 2.63 16 6 N -0.72 -15.58 5.31 -478.54 -2.54 -18.12 16 7 C 0.70 22.79 8.57 179.06 1.53 24.33 16 8 O -0.64 -27.93 16.34 -4.00 -0.07 -28.00 16 9 N -0.73 -23.04 5.56 -478.54 -2.66 -25.70 16 10 C 0.16 6.83 5.61 86.38 0.48 7.32 16 11 C -0.01 -0.49 4.16 29.85 0.12 -0.36 16 12 C -0.54 -30.97 9.66 25.60 0.25 -30.72 16 13 H 0.03 1.77 7.99 -2.91 -0.02 1.75 16 14 C 0.00 0.18 5.47 84.65 0.46 0.64 16 15 N -0.95 -59.41 13.96 21.44 0.30 -59.11 16 16 Si 0.96 42.05 27.47 68.60 1.88 43.93 16 17 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 18 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 19 H -0.24 -9.07 6.54 99.48 0.65 -8.42 16 20 N -0.51 -7.33 4.08 -875.86 -3.58 -10.91 16 21 C 0.04 0.62 5.04 86.22 0.43 1.05 16 22 C -0.07 -0.90 5.94 29.82 0.18 -0.72 16 23 C -0.08 -1.36 5.77 -19.85 -0.11 -1.48 16 24 C -0.13 -1.87 9.66 22.33 0.22 -1.65 16 25 C -0.13 -1.75 10.05 22.23 0.22 -1.53 16 26 C -0.13 -1.92 10.05 22.22 0.22 -1.69 16 27 C -0.13 -2.14 9.65 22.34 0.22 -1.92 16 28 C -0.09 -1.66 5.79 -19.86 -0.12 -1.77 16 29 C 0.09 1.43 4.48 85.59 0.38 1.82 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.75 7.75 -2.39 -0.02 0.73 16 33 H 0.07 0.79 7.06 -2.39 -0.02 0.77 16 34 H 0.06 0.80 6.47 -2.39 -0.02 0.78 16 35 H 0.05 1.22 6.62 -2.39 -0.02 1.20 16 36 H 0.05 1.19 6.81 -2.39 -0.02 1.17 16 37 H 0.41 5.85 7.59 -92.71 -0.70 5.15 16 38 H 0.41 9.73 8.49 -92.71 -0.79 8.95 16 39 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 40 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.04 1.59 7.20 -2.38 -0.02 1.57 16 42 H 0.04 1.51 7.57 -2.39 -0.02 1.49 16 43 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 44 H 0.03 0.49 7.12 -2.39 -0.02 0.48 16 45 H 0.10 1.09 7.85 -2.39 -0.02 1.07 16 46 H 0.09 1.03 8.14 -2.38 -0.02 1.02 16 47 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 49 H 0.14 1.25 8.06 -2.91 -0.02 1.22 16 50 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 51 H 0.13 1.77 8.06 -2.91 -0.02 1.75 16 52 H 0.10 1.46 6.57 -2.39 -0.02 1.45 16 53 H 0.04 0.82 6.06 -2.39 -0.01 0.81 16 Total: -1.00 -76.32 412.80 -1.49 -77.81 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: -0.63 Total: 24.91 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: 5.80 Total: -4.82 kcal Atomic # 7 Polarization: -105.36 SS G_CDS: -8.48 Total: -113.84 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.07 Total: -28.00 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 1.88 Total: 43.93 kcal Total: -76.32 -1.49 -77.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343655270.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.440 kcal (2) G-P(sol) polarization free energy of solvation -76.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds