Wall clock time and date at job start Wed Apr 1 2020 03:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47268 * 2 1 4 4 C 1.53000 * 109.47176 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.46953 * 304.99832 * 4 3 2 6 6 C 1.50704 * 109.46904 * 185.00212 * 4 3 2 7 7 O 1.21281 * 119.99659 * 239.99689 * 6 4 3 8 8 N 1.34771 * 120.00335 * 59.99705 * 6 4 3 9 9 C 1.46499 * 120.00030 * 180.02562 * 8 6 4 10 10 C 1.52997 * 109.47152 * 179.97438 * 9 8 6 11 11 H 1.09001 * 109.50267 * 305.06623 * 10 9 8 12 12 C 1.53041 * 109.49876 * 184.99895 * 10 9 8 13 13 C 1.53039 * 109.53652 * 178.68379 * 12 10 9 14 14 C 1.53189 * 109.31409 * 61.36833 * 13 12 10 15 15 N 1.46925 * 108.77518 * 305.36503 * 14 13 12 16 16 C 1.36933 * 120.63017 * 233.58483 * 15 14 13 17 17 H 1.08004 * 120.00468 * 152.79260 * 16 15 14 18 18 C 1.38809 * 120.00244 * 332.80046 * 16 15 14 19 19 N 1.31618 * 120.00744 * 159.75431 * 18 16 15 20 20 Si 1.86804 * 119.99671 * 339.75126 * 18 16 15 21 21 H 1.48496 * 109.47487 * 94.89552 * 20 18 16 22 22 H 1.48502 * 109.47228 * 214.89577 * 20 18 16 23 23 H 1.48495 * 109.47133 * 334.89191 * 20 18 16 24 24 C 1.46924 * 118.74148 * 53.60292 * 15 14 13 25 25 C 1.50695 * 109.47300 * 64.99867 * 4 3 2 26 26 C 1.38229 * 119.61802 * 85.00082 * 25 4 3 27 27 C 1.38626 * 119.15853 * 179.97438 * 26 25 4 28 28 C 1.38670 * 118.42398 * 359.97438 * 27 26 25 29 29 C 1.38180 * 119.16452 * 0.02562 * 28 27 26 30 30 N 1.31861 * 119.61716 * 264.72440 * 25 4 3 31 31 H 1.09001 * 109.47055 * 299.99873 * 1 2 3 32 32 H 1.09001 * 109.47459 * 60.00013 * 1 2 3 33 33 H 1.08999 * 109.47218 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47055 * 240.00127 * 2 1 3 35 35 H 1.09001 * 109.47459 * 119.99987 * 2 1 3 36 36 H 1.09001 * 109.46870 * 300.00348 * 3 2 1 37 37 H 1.09001 * 109.46979 * 60.00081 * 3 2 1 38 38 H 0.96998 * 119.99653 * 359.97438 * 8 6 4 39 39 H 1.08994 * 109.47115 * 300.00186 * 9 8 6 40 40 H 1.09005 * 109.47064 * 59.99933 * 9 8 6 41 41 H 1.09001 * 109.45916 * 298.70681 * 12 10 9 42 42 H 1.09002 * 109.45882 * 58.68197 * 12 10 9 43 43 H 1.09010 * 109.49586 * 181.31758 * 13 12 10 44 44 H 1.08998 * 109.50322 * 301.37854 * 13 12 10 45 45 H 1.09009 * 109.58670 * 65.14965 * 14 13 12 46 46 H 1.08998 * 109.59345 * 185.57424 * 14 13 12 47 47 H 0.96996 * 120.00847 * 180.02562 * 19 18 16 48 48 H 1.09000 * 109.58945 * 186.60664 * 24 15 14 49 49 H 1.09006 * 109.58326 * 66.18372 * 24 15 14 50 50 H 1.07999 * 120.41998 * 359.97438 * 26 25 4 51 51 H 1.08006 * 120.79030 * 179.97438 * 27 26 25 52 52 H 1.08001 * 120.42066 * 180.02562 * 28 27 26 53 53 H 1.07999 * 119.62070 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8529 0.8409 6 6 4.0724 2.8579 0.1232 7 8 4.7693 3.3324 -0.7485 8 7 3.7472 3.5964 1.2027 9 6 4.2352 4.9725 1.3228 10 6 3.7253 5.5821 2.6302 11 1 2.6391 5.5004 2.6705 12 6 4.1294 7.0567 2.6980 13 6 3.5916 7.6758 3.9901 14 6 4.2042 6.9508 5.1926 15 7 3.9440 5.5109 5.0595 16 6 3.3446 4.8136 6.0742 17 1 2.7688 3.9269 5.8535 18 6 3.4770 5.2463 7.3864 19 7 2.6160 4.8508 8.3000 20 14 4.8774 6.3899 7.8559 21 1 4.4040 7.7967 7.8111 22 1 5.3409 6.0672 9.2294 23 1 6.0008 6.2151 6.9007 24 6 4.3394 4.8334 3.8172 25 6 4.0718 0.8422 -1.2886 26 6 4.2004 1.6403 -2.4098 27 6 4.6634 1.0784 -3.5894 28 6 4.9818 -0.2713 -3.5972 29 6 4.8275 -1.0062 -2.4372 30 7 4.3884 -0.4371 -1.3314 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 3.1895 3.2169 1.8998 39 1 5.3251 4.9729 1.3221 40 1 3.8711 5.5618 0.4812 41 1 5.2163 7.1364 2.6820 42 1 3.7137 7.5869 1.8411 43 1 3.8597 8.7317 4.0267 44 1 2.5066 7.5749 4.0179 45 1 5.2797 7.1271 5.2165 46 1 3.7508 7.3206 6.1122 47 1 2.7083 5.1534 9.2169 48 1 3.9751 3.8061 3.8293 49 1 5.4258 4.8369 3.7289 50 1 3.9433 2.6884 -2.3674 51 1 4.7736 1.6775 -4.4813 52 1 5.3457 -0.7421 -4.4985 53 1 5.0729 -2.0579 -2.4351 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354086850.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:39 Heat of formation + Delta-G solvation = -14.436245 kcal Electronic energy + Delta-G solvation = -30734.120201 eV Core-core repulsion = 26797.791992 eV Total energy + Delta-G solvation = -3936.328210 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.82456 -40.43354 -39.50508 -36.76950 -36.37611 -34.70319 -33.39315 -33.02729 -32.80286 -32.17105 -30.13326 -27.45598 -26.94777 -25.81654 -24.45762 -23.77194 -23.58148 -22.69662 -22.04962 -21.27197 -20.63429 -18.76706 -18.16185 -17.95065 -17.26800 -17.13531 -16.91128 -16.57393 -16.23668 -16.00005 -15.69288 -15.47812 -15.13857 -15.10586 -14.80747 -14.65077 -14.36863 -14.25889 -14.09009 -13.87805 -13.80000 -13.59863 -13.36304 -13.27178 -13.17281 -13.00125 -12.55434 -12.39953 -12.19916 -12.09724 -12.03590 -12.00411 -11.68443 -11.56170 -11.54722 -11.31874 -11.24777 -10.87216 -10.66943 -10.52189 -10.34781 -10.04551 -9.81958 -8.91616 -8.15548 -5.46527 0.22159 0.43537 1.29135 1.41073 1.49078 1.54569 2.11082 2.41789 2.91908 3.06711 3.26817 3.32509 3.52549 3.86186 3.92677 3.97019 3.97580 4.02865 4.06927 4.11940 4.23235 4.26867 4.29434 4.32970 4.40270 4.49084 4.55214 4.65385 4.66530 4.70883 4.78951 4.80488 4.83393 4.85906 4.92062 4.95926 4.99790 5.01868 5.09419 5.16661 5.24378 5.27068 5.27419 5.30540 5.34317 5.35153 5.46676 5.47937 5.59487 5.85398 5.87746 6.13901 6.48870 6.93009 7.06694 7.17274 7.63949 8.04786 9.04065 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.014671 B = 0.002465 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.085068 B =11355.426728 C =12174.396013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.099 4.099 4 C -0.055 4.055 5 H 0.116 0.884 6 C 0.522 3.478 7 O -0.566 6.566 8 N -0.714 5.714 9 C 0.138 3.862 10 C -0.104 4.104 11 H 0.076 0.924 12 C -0.098 4.098 13 C -0.127 4.127 14 C 0.115 3.885 15 N -0.620 5.620 16 C -0.243 4.243 17 H 0.058 0.942 18 C -0.036 4.036 19 N -0.957 5.957 20 Si 0.943 3.057 21 H -0.277 1.277 22 H -0.315 1.315 23 H -0.263 1.263 24 C 0.152 3.848 25 C 0.122 3.878 26 C -0.149 4.149 27 C -0.092 4.092 28 C -0.169 4.169 29 C 0.078 3.922 30 N -0.498 5.498 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.411 0.589 39 H 0.061 0.939 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.056 0.944 45 H 0.029 0.971 46 H 0.045 0.955 47 H 0.260 0.740 48 H 0.058 0.942 49 H 0.025 0.975 50 H 0.139 0.861 51 H 0.153 0.847 52 H 0.163 0.837 53 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.767 -6.123 -25.482 26.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.137 4.137 4 C -0.077 4.077 5 H 0.134 0.866 6 C 0.308 3.692 7 O -0.446 6.446 8 N -0.365 5.365 9 C 0.014 3.986 10 C -0.124 4.124 11 H 0.094 0.906 12 C -0.136 4.136 13 C -0.166 4.166 14 C -0.010 4.010 15 N -0.344 5.344 16 C -0.373 4.373 17 H 0.076 0.924 18 C -0.230 4.230 19 N -0.603 5.603 20 Si 0.773 3.227 21 H -0.204 1.204 22 H -0.244 1.244 23 H -0.187 1.187 24 C 0.027 3.973 25 C -0.016 4.016 26 C -0.169 4.169 27 C -0.118 4.118 28 C -0.188 4.188 29 C -0.079 4.079 30 N -0.207 5.207 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.247 0.753 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.075 0.925 45 H 0.047 0.953 46 H 0.063 0.937 47 H 0.069 0.931 48 H 0.076 0.924 49 H 0.043 0.957 50 H 0.156 0.844 51 H 0.170 0.830 52 H 0.181 0.819 53 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 1.143 -6.278 -25.180 25.976 hybrid contribution 0.491 0.696 0.686 1.093 sum 1.634 -5.582 -24.494 25.176 Atomic orbital electron populations 1.21763 0.94943 1.02063 1.02068 1.21430 0.96224 0.95358 1.02220 1.21575 0.89667 0.98834 1.03626 1.20143 0.98483 0.92221 0.96848 0.86635 1.20488 0.79591 0.87780 0.81328 1.90648 1.39454 1.73710 1.40746 1.46005 1.53129 1.14613 1.22797 1.21308 0.98925 0.81327 0.97066 1.21739 1.01025 0.96504 0.93138 0.90570 1.21361 1.01063 0.93776 0.97401 1.21906 1.00423 0.99389 0.94872 1.21435 0.97334 0.84143 0.98042 1.44479 1.70673 1.03902 1.15332 1.18896 1.23086 1.09381 0.85915 0.92380 1.25857 1.00220 1.01103 0.95864 1.69946 1.37041 1.50252 1.03086 0.85962 0.82038 0.78897 0.75802 1.20422 1.24403 1.18706 1.21109 0.96274 0.95373 0.84582 1.20551 0.96719 0.89921 0.94375 1.22374 0.99573 1.01561 0.93356 1.21960 0.95710 0.95780 0.98369 1.22467 1.00796 0.94780 1.00781 1.23168 0.95344 1.01410 0.88015 1.67382 1.11496 1.11696 1.30157 0.92265 0.92663 0.92297 0.92799 0.91664 0.91291 0.89481 0.75271 0.92066 0.90479 0.91678 0.89660 0.90084 0.92548 0.95296 0.93696 0.93082 0.92353 0.95684 0.84382 0.82968 0.81923 0.80514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.91 71.98 0.71 -1.62 16 2 C -0.11 -2.02 5.72 30.59 0.17 -1.84 16 3 C -0.10 -1.75 4.62 30.59 0.14 -1.60 16 4 C -0.05 -1.18 2.52 -12.29 -0.03 -1.21 16 5 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 6 C 0.52 12.73 6.94 87.66 0.61 13.34 16 7 O -0.57 -16.86 13.11 -3.03 -0.04 -16.90 16 8 N -0.71 -15.94 5.19 -463.07 -2.40 -18.34 16 9 C 0.14 3.19 5.07 86.38 0.44 3.63 16 10 C -0.10 -2.77 2.37 -10.72 -0.03 -2.80 16 11 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 12 C -0.10 -2.46 5.17 30.62 0.16 -2.30 16 13 C -0.13 -3.89 6.08 30.67 0.19 -3.70 16 14 C 0.12 4.68 4.19 86.36 0.36 5.05 16 15 N -0.62 -27.75 2.77 -699.10 -1.94 -29.69 16 16 C -0.24 -13.33 10.04 84.03 0.84 -12.49 16 17 H 0.06 3.43 8.06 -2.91 -0.02 3.41 16 18 C -0.04 -2.07 5.24 84.86 0.44 -1.62 16 19 N -0.96 -59.50 13.97 21.65 0.30 -59.20 16 20 Si 0.94 46.46 24.35 68.60 1.67 48.13 16 21 H -0.28 -12.95 6.70 99.48 0.67 -12.29 16 22 H -0.31 -15.91 7.11 99.48 0.71 -15.20 16 23 H -0.26 -12.41 6.45 99.48 0.64 -11.77 16 24 C 0.15 5.33 5.60 86.36 0.48 5.81 16 25 C 0.12 2.87 4.88 42.55 0.21 3.08 16 26 C -0.15 -3.39 8.27 22.36 0.18 -3.21 16 27 C -0.09 -1.64 10.18 22.47 0.23 -1.41 16 28 C -0.17 -2.53 10.11 22.36 0.23 -2.30 16 29 C 0.08 1.38 11.18 84.67 0.95 2.33 16 30 N -0.50 -11.51 9.63 -183.88 -1.77 -13.28 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.05 1.07 6.90 -2.39 -0.02 1.06 16 35 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.09 1.37 7.43 -2.39 -0.02 1.35 16 38 H 0.41 8.37 7.07 -92.71 -0.66 7.72 16 39 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 41 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 44 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.03 1.16 6.98 -2.38 -0.02 1.14 16 46 H 0.04 2.06 4.50 -2.39 -0.01 2.04 16 47 H 0.26 15.47 8.31 -92.71 -0.77 14.69 16 48 H 0.06 2.04 7.14 -2.39 -0.02 2.02 16 49 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 50 H 0.14 3.40 5.94 -2.91 -0.02 3.38 16 51 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 52 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 53 H 0.18 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -71.04 407.84 2.24 -68.80 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.13 Total: 23.35 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 6.29 Total: -2.88 kcal Atomic # 7 Polarization: -114.70 SS G_CDS: -5.81 Total: -120.51 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.04 Total: -16.90 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.67 Total: 48.13 kcal Total: -71.04 2.24 -68.80 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354086850.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.367 kcal (2) G-P(sol) polarization free energy of solvation -71.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds