Wall clock time and date at job start Wed Apr 1 2020 03:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47052 * 2 1 4 4 C 1.52999 * 109.47253 * 120.00391 * 2 1 3 5 5 H 1.09000 * 109.47058 * 301.50825 * 4 2 1 6 6 C 1.50702 * 109.47317 * 61.50168 * 4 2 1 7 7 O 1.21287 * 119.99729 * 33.98257 * 6 4 2 8 8 N 1.34781 * 120.00353 * 213.98011 * 6 4 2 9 9 C 1.46499 * 120.00026 * 175.11829 * 8 6 4 10 10 C 1.53000 * 109.46730 * 179.72842 * 9 8 6 11 11 H 1.09002 * 109.49609 * 305.06179 * 10 9 8 12 12 C 1.53045 * 109.49487 * 185.00122 * 10 9 8 13 13 C 1.53034 * 109.53631 * 178.68200 * 12 10 9 14 14 C 1.53193 * 109.31732 * 61.36577 * 13 12 10 15 15 N 1.46926 * 108.77091 * 305.36288 * 14 13 12 16 16 C 1.36933 * 120.63270 * 233.58598 * 15 14 13 17 17 H 1.08001 * 120.00376 * 148.41866 * 16 15 14 18 18 C 1.38819 * 119.99764 * 328.41628 * 16 15 14 19 19 N 1.31618 * 119.99716 * 346.38456 * 18 16 15 20 20 Si 1.86793 * 119.99817 * 166.38440 * 18 16 15 21 21 H 1.48507 * 109.47302 * 90.00463 * 20 18 16 22 22 H 1.48504 * 109.46913 * 209.99908 * 20 18 16 23 23 H 1.48499 * 109.47559 * 330.00126 * 20 18 16 24 24 C 1.46934 * 118.73780 * 53.61027 * 15 14 13 25 25 C 1.50693 * 109.47491 * 181.50503 * 4 2 1 26 26 C 1.38663 * 120.78899 * 299.71914 * 25 4 2 27 27 C 1.38200 * 119.16145 * 179.75317 * 26 25 4 28 28 N 1.31869 * 120.76557 * 0.53034 * 27 26 25 29 29 C 1.31870 * 121.72491 * 359.74323 * 28 27 26 30 30 C 1.38207 * 120.76577 * 359.97438 * 29 28 27 31 31 H 1.08999 * 109.47132 * 294.52703 * 1 2 3 32 32 H 1.08999 * 109.47230 * 54.52628 * 1 2 3 33 33 H 1.08999 * 109.47215 * 174.52299 * 1 2 3 34 34 H 1.09003 * 109.46764 * 239.99891 * 2 1 3 35 35 H 1.09009 * 109.47305 * 179.97438 * 3 2 1 36 36 H 1.08998 * 109.47399 * 299.99608 * 3 2 1 37 37 H 1.08997 * 109.47308 * 60.00745 * 3 2 1 38 38 H 0.96995 * 119.99362 * 354.84784 * 8 6 4 39 39 H 1.09004 * 109.47274 * 299.72750 * 9 8 6 40 40 H 1.08996 * 109.47247 * 59.72561 * 9 8 6 41 41 H 1.09000 * 109.45852 * 298.70245 * 12 10 9 42 42 H 1.09000 * 109.45922 * 58.67271 * 12 10 9 43 43 H 1.09007 * 109.49696 * 181.31616 * 13 12 10 44 44 H 1.09001 * 109.50092 * 301.37710 * 13 12 10 45 45 H 1.08998 * 109.58444 * 65.14760 * 14 13 12 46 46 H 1.08995 * 109.59013 * 185.57428 * 14 13 12 47 47 H 0.96998 * 119.99668 * 179.97438 * 19 18 16 48 48 H 1.09004 * 109.58095 * 186.60297 * 24 15 14 49 49 H 1.08995 * 109.58873 * 66.18072 * 24 15 14 50 50 H 1.07994 * 120.41505 * 359.97438 * 26 25 4 51 51 H 1.07998 * 119.61512 * 180.29272 * 27 26 25 52 52 H 1.07997 * 119.61920 * 179.97438 * 29 28 27 53 53 H 1.07998 * 120.42095 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6548 -0.2234 2.1390 6 6 1.5684 -2.1525 1.2307 7 8 1.4607 -2.7419 0.1761 8 7 1.2662 -2.7776 2.3859 9 6 0.7066 -4.1312 2.3617 10 6 0.4629 -4.6079 3.7950 11 1 1.3877 -4.5294 4.3667 12 6 -0.0037 -6.0654 3.7761 13 6 -0.2162 -6.5533 5.2109 14 6 -1.3040 -5.7061 5.8785 15 7 -0.9313 -4.2888 5.7720 16 6 -0.8781 -3.4957 6.8870 17 1 -0.1696 -2.6822 6.9379 18 6 -1.7350 -3.7374 7.9521 19 7 -2.7673 -4.5392 7.7974 20 14 -1.4230 -2.9246 9.6048 21 1 -2.1291 -1.6191 9.6556 22 1 -1.9272 -3.8026 10.6912 23 1 0.0351 -2.7059 9.7815 24 6 -0.6172 -3.7386 4.4463 25 6 3.5465 -0.6891 1.2680 26 6 4.2816 -1.2652 0.2431 27 6 5.6618 -1.2117 0.2919 28 7 6.2790 -0.6311 1.3023 29 6 5.6125 -0.0780 2.2966 30 6 4.2306 -0.0878 2.3133 31 1 -0.3633 0.4266 0.9349 32 1 -0.3633 0.5964 -0.8369 33 1 -0.3633 -1.0230 -0.0981 34 1 1.8933 -0.5139 -0.8900 35 1 3.1301 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6768 1.9562 0.8900 38 1 1.4230 -2.3326 3.2334 39 1 -0.2367 -4.1247 1.8156 40 1 1.4071 -4.8053 1.8687 41 1 -0.9410 -6.1395 3.2248 42 1 0.7526 -6.6826 3.2911 43 1 -0.5259 -7.5984 5.1977 44 1 0.7148 -6.4569 5.7697 45 1 -2.2566 -5.8721 5.3754 46 1 -1.3900 -5.9834 6.9290 47 1 -3.3658 -4.7083 8.5417 48 1 -0.2500 -2.7177 4.5521 49 1 -1.5138 -3.7442 3.8266 50 1 3.7819 -1.7465 -0.5845 51 1 6.2415 -1.6539 -0.5048 52 1 6.1528 0.3880 3.1074 53 1 3.6903 0.3673 3.1303 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354086996.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:57 Heat of formation + Delta-G solvation = -25.270638 kcal Electronic energy + Delta-G solvation = -31045.004171 eV Core-core repulsion = 27108.206147 eV Total energy + Delta-G solvation = -3936.798024 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.81583 -40.52104 -39.40646 -37.24633 -36.17571 -34.68403 -33.54563 -32.29346 -32.13201 -31.97455 -29.15838 -28.01492 -27.24112 -26.51278 -24.49090 -23.86642 -23.55824 -22.67853 -21.90715 -20.91800 -20.39015 -18.72366 -18.26992 -17.98394 -17.01637 -16.91017 -16.80431 -16.52496 -16.34533 -15.76978 -15.53595 -15.34481 -15.23743 -15.05152 -14.60001 -14.51598 -14.48282 -14.33630 -14.00471 -13.76477 -13.74819 -13.40673 -13.21787 -12.99826 -12.97339 -12.85224 -12.61244 -12.51772 -12.28172 -12.16180 -11.99287 -11.94399 -11.83203 -11.63398 -11.58298 -11.35873 -11.13438 -11.06724 -10.54009 -10.44461 -10.34639 -10.08318 -10.05935 -8.61880 -7.85994 -5.36352 0.20514 0.20857 1.47532 1.49418 1.58215 1.58365 2.18103 2.51449 2.85505 3.30199 3.46998 3.57456 3.60989 3.63004 3.73113 3.97416 3.98542 4.00878 4.07572 4.09173 4.18569 4.23875 4.35270 4.39782 4.47759 4.56639 4.60569 4.64874 4.72062 4.76084 4.78399 4.87399 4.89659 4.90824 4.95909 4.96837 5.00857 5.04066 5.09898 5.20746 5.22783 5.30957 5.32546 5.34932 5.39070 5.43819 5.48959 5.56884 5.67273 5.76778 5.77628 6.41471 6.51901 7.02755 7.16583 7.19140 7.86485 8.40553 9.20152 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.011210 B = 0.002723 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.244628 B =10280.668818 C =10723.963480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.070 4.070 3 C -0.140 4.140 4 C -0.060 4.060 5 H 0.121 0.879 6 C 0.523 3.477 7 O -0.570 6.570 8 N -0.718 5.718 9 C 0.139 3.861 10 C -0.100 4.100 11 H 0.073 0.927 12 C -0.097 4.097 13 C -0.130 4.130 14 C 0.175 3.825 15 N -0.609 5.609 16 C -0.263 4.263 17 H 0.070 0.930 18 C -0.049 4.049 19 N -0.936 5.936 20 Si 0.966 3.034 21 H -0.284 1.284 22 H -0.296 1.296 23 H -0.267 1.267 24 C 0.155 3.845 25 C -0.031 4.031 26 C -0.168 4.168 27 C 0.090 3.910 28 N -0.510 5.510 29 C 0.091 3.909 30 C -0.161 4.161 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.037 0.963 34 H 0.069 0.931 35 H 0.051 0.949 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.410 0.590 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.052 0.948 45 H -0.007 1.007 46 H 0.047 0.953 47 H 0.249 0.751 48 H 0.058 0.942 49 H 0.006 0.994 50 H 0.132 0.868 51 H 0.170 0.830 52 H 0.179 0.821 53 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.242 9.361 -14.550 21.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.089 4.089 3 C -0.197 4.197 4 C -0.082 4.082 5 H 0.139 0.861 6 C 0.310 3.690 7 O -0.449 6.449 8 N -0.369 5.369 9 C 0.015 3.985 10 C -0.120 4.120 11 H 0.092 0.908 12 C -0.135 4.135 13 C -0.169 4.169 14 C 0.050 3.950 15 N -0.332 5.332 16 C -0.393 4.393 17 H 0.088 0.912 18 C -0.245 4.245 19 N -0.582 5.582 20 Si 0.794 3.206 21 H -0.210 1.210 22 H -0.223 1.223 23 H -0.192 1.192 24 C 0.029 3.971 25 C -0.040 4.040 26 C -0.187 4.187 27 C -0.066 4.066 28 N -0.220 5.220 29 C -0.065 4.065 30 C -0.180 4.180 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.246 0.754 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.071 0.929 45 H 0.011 0.989 46 H 0.066 0.934 47 H 0.058 0.942 48 H 0.077 0.923 49 H 0.024 0.976 50 H 0.150 0.850 51 H 0.187 0.813 52 H 0.196 0.804 53 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 13.930 8.917 -15.159 22.436 hybrid contribution -1.388 0.102 1.372 1.954 sum 12.542 9.019 -13.787 20.706 Atomic orbital electron populations 1.21870 0.94536 1.01354 1.02944 1.20934 0.96017 0.96562 0.95395 1.21801 1.00721 0.94126 1.03053 1.20498 0.91950 0.92431 1.03281 0.86080 1.20691 0.76253 0.88719 0.83340 1.90664 1.54454 1.68045 1.31736 1.46098 1.64214 1.17486 1.09142 1.21238 0.98103 0.82832 0.96373 1.21711 0.99588 0.96602 0.94132 0.90814 1.21335 1.01093 0.94727 0.96388 1.22003 0.99509 0.98994 0.96424 1.20578 0.92618 0.83297 0.98528 1.44254 1.80453 1.06041 1.02451 1.19509 1.13112 1.12198 0.94521 0.91227 1.25911 0.95034 1.00527 1.02994 1.70173 1.15245 1.41515 1.31286 0.85303 0.78155 0.77566 0.79576 1.21048 1.22299 1.19166 1.21007 0.94444 0.95840 0.85801 1.19866 0.93912 0.95793 0.94439 1.22159 0.95653 1.00813 1.00125 1.23018 0.92037 0.95281 0.96280 1.67708 1.42202 1.09517 1.02551 1.23212 0.91924 0.95128 0.96270 1.22358 0.95892 1.00547 0.99252 0.91711 0.91107 0.94398 0.91230 0.93038 0.91498 0.91334 0.75384 0.92359 0.91476 0.92626 0.90451 0.91359 0.92911 0.98908 0.93418 0.94215 0.92314 0.97648 0.85023 0.81276 0.80409 0.82029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.85 71.98 0.64 -2.08 16 2 C -0.07 -1.21 2.01 -10.80 -0.02 -1.23 16 3 C -0.14 -1.86 8.93 71.98 0.64 -1.22 16 4 C -0.06 -1.07 1.98 -12.29 -0.02 -1.10 16 5 H 0.12 1.67 7.94 -2.39 -0.02 1.66 16 6 C 0.52 12.62 5.59 87.66 0.49 13.11 16 7 O -0.57 -17.41 15.35 -3.05 -0.05 -17.45 16 8 N -0.72 -16.93 5.33 -463.05 -2.47 -19.40 16 9 C 0.14 3.67 5.07 86.38 0.44 4.10 16 10 C -0.10 -3.01 2.37 -10.72 -0.03 -3.04 16 11 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 12 C -0.10 -2.94 5.17 30.62 0.16 -2.78 16 13 C -0.13 -4.67 6.08 30.67 0.19 -4.48 16 14 C 0.18 8.30 5.26 86.36 0.45 8.76 16 15 N -0.61 -29.30 2.98 -699.09 -2.08 -31.38 16 16 C -0.26 -13.86 9.56 84.04 0.80 -13.05 16 17 H 0.07 3.49 7.87 -2.91 -0.02 3.46 16 18 C -0.05 -2.67 4.97 84.86 0.42 -2.25 16 19 N -0.94 -54.74 11.25 21.65 0.24 -54.50 16 20 Si 0.97 43.45 29.57 68.60 2.03 45.48 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 22 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 23 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 24 C 0.15 5.91 5.60 86.36 0.48 6.39 16 25 C -0.03 -0.56 3.45 -19.67 -0.07 -0.62 16 26 C -0.17 -3.28 8.96 22.36 0.20 -3.07 16 27 C 0.09 1.71 11.18 84.68 0.95 2.66 16 28 N -0.51 -10.55 10.36 -195.85 -2.03 -12.58 16 29 C 0.09 1.51 11.18 84.68 0.95 2.45 16 30 C -0.16 -2.40 9.76 22.36 0.22 -2.19 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.04 0.87 7.08 -2.39 -0.02 0.85 16 34 H 0.07 1.42 7.21 -2.39 -0.02 1.41 16 35 H 0.05 0.74 7.17 -2.38 -0.02 0.72 16 36 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.41 8.50 7.71 -92.71 -0.71 7.79 16 39 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 40 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 44 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 45 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 46 H 0.05 2.57 6.22 -2.39 -0.01 2.56 16 47 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 48 H 0.06 2.09 7.14 -2.38 -0.02 2.08 16 49 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 50 H 0.13 2.73 7.36 -2.91 -0.02 2.71 16 51 H 0.17 2.47 8.06 -2.91 -0.02 2.44 16 52 H 0.18 1.97 8.06 -2.91 -0.02 1.95 16 53 H 0.16 1.56 8.01 -2.91 -0.02 1.53 16 Total: -1.00 -68.22 416.15 2.70 -65.51 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.17 Total: 23.96 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 6.89 Total: 0.36 kcal Atomic # 7 Polarization: -111.52 SS G_CDS: -6.34 Total: -117.86 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.05 Total: -17.45 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -68.22 2.70 -65.51 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354086996.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.243 kcal (2) G-P(sol) polarization free energy of solvation -68.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds