Wall clock time and date at job start Wed Apr 1 2020 03:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47206 * 2 1 4 4 C 1.53004 * 109.46823 * 120.00073 * 2 1 3 5 5 H 1.08995 * 109.46855 * 302.20268 * 4 2 1 6 6 C 1.50709 * 109.46667 * 182.20523 * 4 2 1 7 7 O 1.21271 * 120.00135 * 324.57194 * 6 4 2 8 8 N 1.34777 * 119.99412 * 144.57459 * 6 4 2 9 9 C 1.46500 * 119.99545 * 184.49313 * 8 6 4 10 10 C 1.53000 * 109.47076 * 180.02562 * 9 8 6 11 11 H 1.08998 * 109.49768 * 54.99831 * 10 9 8 12 12 C 1.53036 * 109.49925 * 175.06459 * 10 9 8 13 13 C 1.53043 * 109.54092 * 181.31550 * 12 10 9 14 14 C 1.53194 * 109.30909 * 298.63635 * 13 12 10 15 15 N 1.46924 * 108.77829 * 54.63585 * 14 13 12 16 16 C 1.36939 * 120.63411 * 126.38677 * 15 14 13 17 17 H 1.07993 * 119.99791 * 211.26054 * 16 15 14 18 18 C 1.38810 * 119.99804 * 31.26120 * 16 15 14 19 19 N 1.31625 * 120.00292 * 11.05415 * 18 16 15 20 20 Si 1.86798 * 120.00090 * 191.05817 * 18 16 15 21 21 H 1.48502 * 109.47068 * 59.99548 * 20 18 16 22 22 H 1.48496 * 109.47387 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47217 * 300.00251 * 20 18 16 24 24 C 1.46938 * 118.76146 * 306.41171 * 15 14 13 25 25 C 1.50696 * 109.47195 * 62.20870 * 4 2 1 26 26 C 1.38645 * 120.79136 * 60.01284 * 25 4 2 27 27 C 1.38209 * 119.16294 * 179.97438 * 26 25 4 28 28 N 1.31871 * 120.76329 * 359.97438 * 27 26 25 29 29 C 1.31868 * 121.72320 * 359.97438 * 28 27 26 30 30 C 1.38204 * 120.76867 * 0.02562 * 29 28 27 31 31 H 1.09008 * 109.47056 * 300.00363 * 1 2 3 32 32 H 1.09006 * 109.46979 * 59.99575 * 1 2 3 33 33 H 1.08995 * 109.47530 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.47013 * 240.00022 * 2 1 3 35 35 H 1.08998 * 109.47004 * 185.53924 * 3 2 1 36 36 H 1.08999 * 109.47335 * 305.54030 * 3 2 1 37 37 H 1.09008 * 109.46973 * 65.54246 * 3 2 1 38 38 H 0.97001 * 120.00276 * 4.50003 * 8 6 4 39 39 H 1.09001 * 109.47542 * 300.00004 * 9 8 6 40 40 H 1.08998 * 109.46899 * 60.00060 * 9 8 6 41 41 H 1.08997 * 109.46229 * 301.33544 * 12 10 9 42 42 H 1.09000 * 109.46088 * 61.30921 * 12 10 9 43 43 H 1.08998 * 109.49786 * 58.58676 * 13 12 10 44 44 H 1.08998 * 109.50127 * 178.68446 * 13 12 10 45 45 H 1.09001 * 109.58453 * 174.42375 * 14 13 12 46 46 H 1.08999 * 109.58829 * 294.84333 * 14 13 12 47 47 H 0.96992 * 119.99756 * 179.97438 * 19 18 16 48 48 H 1.09002 * 109.55712 * 293.78154 * 24 15 14 49 49 H 1.09004 * 109.61369 * 173.36232 * 24 15 14 50 50 H 1.08002 * 120.42065 * 0.02562 * 26 25 4 51 51 H 1.08001 * 119.61815 * 180.26316 * 27 26 25 52 52 H 1.08011 * 119.61437 * 180.02562 * 29 28 27 53 53 H 1.08000 * 120.41729 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6447 -0.2308 2.1387 6 6 3.5460 -0.6741 1.2769 7 8 4.1739 -0.7407 0.2415 8 7 4.1950 -0.5579 2.4524 9 6 5.6527 -0.4130 2.4730 10 6 6.1337 -0.3020 3.9211 11 1 5.7744 -1.1591 4.4906 12 6 7.6636 -0.2744 3.9505 13 6 8.1464 -0.1964 5.4007 14 6 7.6271 1.0959 6.0387 15 7 6.1667 1.1454 5.8855 16 6 5.3569 1.3335 6.9736 17 1 4.3708 0.8936 6.9953 18 6 5.8034 2.0896 8.0486 19 7 6.9045 2.8025 7.9397 20 14 4.8419 2.0953 9.6501 21 1 4.7694 0.7133 10.1888 22 1 5.5235 2.9744 10.6337 23 1 3.4684 2.6020 9.4010 24 6 5.5910 0.9886 4.5427 25 6 1.5828 -2.1570 1.2222 26 6 1.9536 -3.0005 0.1862 27 6 1.5156 -4.3113 0.1954 28 7 0.7548 -4.7614 1.1739 29 6 0.3837 -3.9881 2.1755 30 6 0.7830 -2.6663 2.2338 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1255 1.4441 -0.0992 36 1 1.5979 1.9842 -0.8362 37 1 1.7599 1.9269 0.9355 38 1 3.6970 -0.5704 3.2847 39 1 6.1111 -1.2836 2.0040 40 1 5.9361 0.4860 1.9256 41 1 8.0522 -1.1810 3.4867 42 1 8.0217 0.5965 3.4015 43 1 7.7681 -1.0542 5.9567 44 1 9.2362 -0.2004 5.4221 45 1 7.8840 1.1093 7.0979 46 1 8.0761 1.9553 5.5409 47 1 7.2163 3.3311 8.6907 48 1 5.8735 1.8396 3.9229 49 1 4.5049 0.9310 4.6147 50 1 2.5775 -2.6381 -0.6174 51 1 1.8036 -4.9759 -0.6057 52 1 -0.2397 -4.3925 2.9594 53 1 0.4754 -2.0379 3.0565 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354086999.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:12 Heat of formation + Delta-G solvation = -24.782403 kcal Electronic energy + Delta-G solvation = -31044.007397 eV Core-core repulsion = 27107.230544 eV Total energy + Delta-G solvation = -3936.776853 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.81572 -40.52364 -39.40604 -37.23641 -36.17580 -34.68210 -33.55852 -32.28949 -32.13280 -31.96592 -29.14403 -28.02058 -27.24357 -26.51073 -24.49194 -23.86736 -23.54952 -22.67026 -21.91256 -20.92258 -20.38618 -18.72370 -18.26166 -17.99647 -17.00907 -16.90864 -16.81188 -16.52914 -16.34389 -15.76451 -15.53427 -15.34540 -15.21708 -15.04893 -14.60530 -14.51588 -14.49229 -14.33161 -13.99214 -13.75716 -13.73047 -13.39254 -13.20599 -13.02487 -12.98912 -12.79755 -12.61572 -12.50532 -12.31717 -12.17030 -11.98757 -11.94283 -11.82880 -11.63792 -11.57925 -11.35081 -11.14136 -11.07068 -10.52826 -10.44396 -10.34514 -10.08318 -10.05906 -8.61563 -7.84822 -5.36280 0.20318 0.20832 1.48433 1.50499 1.56826 1.58755 2.18268 2.51642 2.85446 3.31117 3.46899 3.57550 3.60842 3.63153 3.73434 3.97349 3.98760 4.00855 4.07658 4.09168 4.18504 4.23848 4.35401 4.40305 4.47404 4.56766 4.60991 4.64503 4.72066 4.76214 4.78188 4.87748 4.89970 4.90813 4.95779 4.96963 5.01155 5.04363 5.09999 5.20669 5.22947 5.31054 5.32625 5.34976 5.39429 5.43887 5.49289 5.58261 5.67312 5.76733 5.79929 6.42205 6.52150 7.02610 7.17227 7.19524 7.87040 8.40399 9.20805 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.011249 B = 0.002714 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.546350 B =10315.251469 C =10740.603957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.070 4.070 3 C -0.151 4.151 4 C -0.060 4.060 5 H 0.121 0.879 6 C 0.524 3.476 7 O -0.569 6.569 8 N -0.718 5.718 9 C 0.139 3.861 10 C -0.100 4.100 11 H 0.073 0.927 12 C -0.097 4.097 13 C -0.131 4.131 14 C 0.174 3.826 15 N -0.609 5.609 16 C -0.263 4.263 17 H 0.071 0.929 18 C -0.050 4.050 19 N -0.938 5.938 20 Si 0.968 3.032 21 H -0.277 1.277 22 H -0.298 1.298 23 H -0.273 1.273 24 C 0.155 3.845 25 C -0.032 4.032 26 C -0.167 4.167 27 C 0.090 3.910 28 N -0.510 5.510 29 C 0.091 3.909 30 C -0.161 4.161 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.038 0.962 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.410 0.590 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.077 0.923 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.067 0.933 45 H 0.052 0.948 46 H -0.008 1.008 47 H 0.249 0.751 48 H 0.006 0.994 49 H 0.059 0.941 50 H 0.132 0.868 51 H 0.170 0.830 52 H 0.179 0.821 53 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.424 -9.952 -14.869 21.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.089 4.089 3 C -0.208 4.208 4 C -0.082 4.082 5 H 0.139 0.861 6 C 0.310 3.690 7 O -0.449 6.449 8 N -0.369 5.369 9 C 0.015 3.985 10 C -0.120 4.120 11 H 0.092 0.908 12 C -0.135 4.135 13 C -0.170 4.170 14 C 0.048 3.952 15 N -0.333 5.333 16 C -0.393 4.393 17 H 0.089 0.911 18 C -0.246 4.246 19 N -0.584 5.584 20 Si 0.796 3.204 21 H -0.203 1.203 22 H -0.224 1.224 23 H -0.198 1.198 24 C 0.029 3.971 25 C -0.041 4.041 26 C -0.187 4.187 27 C -0.066 4.066 28 N -0.220 5.220 29 C -0.066 4.066 30 C -0.180 4.180 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.057 0.943 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.246 0.754 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.070 0.930 46 H 0.010 0.990 47 H 0.058 0.942 48 H 0.024 0.976 49 H 0.077 0.923 50 H 0.150 0.850 51 H 0.187 0.813 52 H 0.196 0.804 53 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -12.173 -10.735 -15.489 22.435 hybrid contribution 0.236 1.361 1.379 1.952 sum -11.937 -9.373 -14.111 20.724 Atomic orbital electron populations 1.21803 0.92910 1.01949 1.03070 1.20935 0.96837 0.95713 0.95368 1.21885 1.00475 0.95576 1.02876 1.20498 0.90774 0.93643 1.03240 0.86102 1.20679 0.90247 0.74905 0.83142 1.90659 1.69573 1.51008 1.33623 1.46104 1.08355 1.73451 1.09031 1.21235 0.79795 1.01269 0.96234 1.21710 0.96862 0.99428 0.94045 0.90831 1.21334 0.94028 1.01869 0.96310 1.22011 0.99804 0.98769 0.96389 1.20618 0.83165 0.92463 0.98917 1.44254 1.02113 1.84335 1.02557 1.19506 0.99261 1.24766 0.95767 0.91142 1.25922 0.99091 0.96576 1.02964 1.70152 1.25491 1.31482 1.31266 0.85340 0.78296 0.77404 0.79382 1.20274 1.22440 1.19816 1.21009 0.96701 0.93825 0.85549 1.19873 0.95701 0.94043 0.94479 1.22164 1.01334 0.95274 0.99942 1.23024 0.93162 0.93849 0.96608 1.67708 1.12176 1.39265 1.02829 1.23216 0.96925 0.90566 0.95859 1.22360 0.98595 0.97504 0.99573 0.91335 0.91494 0.92943 0.91217 0.94302 0.91113 0.91840 0.75379 0.91494 0.92359 0.90490 0.92636 0.92993 0.91409 0.92991 0.98986 0.94219 0.97621 0.92282 0.84987 0.81271 0.80391 0.82020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.98 71.98 0.65 -1.21 16 2 C -0.07 -1.20 2.03 -10.79 -0.02 -1.22 16 3 C -0.15 -2.77 8.79 71.98 0.63 -2.14 16 4 C -0.06 -1.07 1.98 -12.28 -0.02 -1.10 16 5 H 0.12 1.66 7.93 -2.39 -0.02 1.65 16 6 C 0.52 12.60 5.52 87.66 0.48 13.09 16 7 O -0.57 -17.36 15.20 -3.00 -0.05 -17.40 16 8 N -0.72 -16.90 5.33 -463.06 -2.47 -19.36 16 9 C 0.14 3.67 5.07 86.38 0.44 4.11 16 10 C -0.10 -3.02 2.37 -10.72 -0.03 -3.04 16 11 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 12 C -0.10 -2.95 5.17 30.62 0.16 -2.80 16 13 C -0.13 -4.72 6.08 30.67 0.19 -4.53 16 14 C 0.17 8.27 5.26 86.36 0.45 8.72 16 15 N -0.61 -29.35 2.99 -699.07 -2.09 -31.44 16 16 C -0.26 -13.83 9.58 84.03 0.80 -13.03 16 17 H 0.07 3.52 7.85 -2.91 -0.02 3.49 16 18 C -0.05 -2.73 5.04 84.86 0.43 -2.30 16 19 N -0.94 -54.78 11.07 21.65 0.24 -54.54 16 20 Si 0.97 43.45 29.57 68.60 2.03 45.48 16 21 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 22 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 24 C 0.15 5.90 5.60 86.36 0.48 6.39 16 25 C -0.03 -0.57 3.63 -19.67 -0.07 -0.64 16 26 C -0.17 -3.28 8.91 22.36 0.20 -3.08 16 27 C 0.09 1.71 11.18 84.68 0.95 2.66 16 28 N -0.51 -10.56 10.36 -195.83 -2.03 -12.59 16 29 C 0.09 1.50 11.18 84.68 0.95 2.45 16 30 C -0.16 -2.40 9.76 22.36 0.22 -2.18 16 31 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.05 0.73 7.29 -2.39 -0.02 0.72 16 34 H 0.07 1.41 7.19 -2.39 -0.02 1.39 16 35 H 0.04 0.91 6.85 -2.39 -0.02 0.89 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.41 8.47 7.69 -92.71 -0.71 7.75 16 39 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.05 2.82 6.11 -2.39 -0.01 2.81 16 46 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 47 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 48 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 49 H 0.06 2.10 7.14 -2.38 -0.02 2.08 16 50 H 0.13 2.75 7.26 -2.91 -0.02 2.73 16 51 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 52 H 0.18 1.96 8.06 -2.91 -0.02 1.94 16 53 H 0.16 1.55 8.01 -2.91 -0.02 1.53 16 Total: -1.00 -68.08 415.55 2.69 -65.39 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: 0.17 Total: 24.34 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: 6.88 Total: 0.14 kcal Atomic # 7 Polarization: -111.60 SS G_CDS: -6.34 Total: -117.94 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.05 Total: -17.40 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -68.08 2.69 -65.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354086999.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.604 kcal (2) G-P(sol) polarization free energy of solvation -68.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds