Wall clock time and date at job start Wed Apr 1 2020 04:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47401 * 2 1 4 4 H 1.08996 * 109.46674 * 305.00372 * 3 2 1 5 5 N 1.46504 * 109.46478 * 64.99793 * 3 2 1 6 6 C 1.39675 * 120.00040 * 274.99809 * 5 3 2 7 7 C 1.38912 * 120.06854 * 180.02562 * 6 5 3 8 8 C 1.38107 * 119.92137 * 179.97438 * 7 6 5 9 9 C 1.38284 * 120.07444 * 0.02562 * 8 7 6 10 10 C 1.38289 * 120.15290 * 0.27289 * 9 8 7 11 11 C 1.38106 * 120.06965 * 359.45048 * 10 9 8 12 12 C 1.50699 * 109.47494 * 184.99822 * 3 2 1 13 13 O 1.21280 * 120.00241 * 240.00105 * 12 3 2 14 14 N 1.34778 * 119.99472 * 59.99946 * 12 3 2 15 15 C 1.46498 * 119.99764 * 179.97438 * 14 12 3 16 16 C 1.53001 * 109.47253 * 180.02562 * 15 14 12 17 17 H 1.09000 * 109.49869 * 305.06730 * 16 15 14 18 18 C 1.53041 * 109.49587 * 185.00147 * 16 15 14 19 19 C 1.53048 * 109.53678 * 178.68538 * 18 16 15 20 20 C 1.53188 * 109.31043 * 61.36583 * 19 18 16 21 21 N 1.46930 * 108.77750 * 305.36839 * 20 19 18 22 22 C 1.36936 * 120.62985 * 233.58844 * 21 20 19 23 23 H 1.07998 * 120.00342 * 151.83114 * 22 21 20 24 24 C 1.38814 * 119.99686 * 331.83250 * 22 21 20 25 25 N 1.31618 * 120.00243 * 343.07437 * 24 22 21 26 26 Si 1.86807 * 119.99827 * 163.07908 * 24 22 21 27 27 H 1.48497 * 109.47084 * 359.97438 * 26 24 22 28 28 H 1.48493 * 109.47150 * 119.99793 * 26 24 22 29 29 H 1.48502 * 109.46863 * 239.99869 * 26 24 22 30 30 C 1.46922 * 118.74138 * 53.60629 * 21 20 19 31 31 H 1.09002 * 109.46904 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46975 * 299.99891 * 1 2 3 33 33 H 1.09001 * 109.47325 * 59.99640 * 1 2 3 34 34 H 1.09000 * 109.47657 * 240.00021 * 2 1 3 35 35 H 1.09001 * 109.47325 * 120.00360 * 2 1 3 36 36 H 0.97004 * 119.99386 * 95.00932 * 5 3 2 37 37 H 1.08000 * 120.04275 * 0.02562 * 7 6 5 38 38 H 1.08001 * 119.96413 * 180.02562 * 8 7 6 39 39 H 1.08002 * 119.92782 * 179.97438 * 9 8 7 40 40 H 1.07996 * 119.96903 * 179.70170 * 10 9 8 41 41 H 1.08001 * 120.04102 * 180.27430 * 11 10 9 42 42 H 0.97001 * 120.00498 * 0.02562 * 14 12 3 43 43 H 1.09000 * 109.47674 * 300.00979 * 15 14 12 44 44 H 1.09003 * 109.46877 * 60.00498 * 15 14 12 45 45 H 1.08995 * 109.46257 * 298.70968 * 18 16 15 46 46 H 1.09005 * 109.46064 * 58.68347 * 18 16 15 47 47 H 1.08993 * 109.49883 * 181.31807 * 19 18 16 48 48 H 1.08997 * 109.49693 * 301.38677 * 19 18 16 49 49 H 1.09001 * 109.58791 * 65.15516 * 20 19 18 50 50 H 1.08994 * 109.58710 * 185.57635 * 20 19 18 51 51 H 0.97000 * 119.99960 * 180.02562 * 25 24 22 52 52 H 1.08992 * 109.58943 * 186.60539 * 30 21 20 53 53 H 1.08998 * 109.58458 * 66.18205 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6524 2.0974 1.2519 6 6 0.3908 2.6850 1.3712 7 6 0.0220 3.3068 2.5573 8 6 -1.2259 3.8872 2.6718 9 6 -2.1080 3.8494 1.6075 10 6 -1.7463 3.2258 0.4273 11 6 -0.4978 2.6484 0.3042 12 6 3.5419 1.4444 -0.1238 13 8 4.2217 1.9436 0.7478 14 7 4.1297 0.8911 -1.2031 15 6 5.5897 0.8934 -1.3238 16 6 5.9945 0.2098 -2.6314 17 1 5.5559 -0.7873 -2.6716 18 6 7.5194 0.1002 -2.6997 19 6 7.9239 -0.6128 -3.9921 20 6 7.4437 0.2063 -5.1942 21 7 5.9993 0.4400 -5.0606 22 6 5.1418 0.1070 -6.0750 23 1 4.1183 -0.1561 -5.8525 24 6 5.5883 0.1075 -7.3894 25 7 6.7025 0.7326 -7.7058 26 14 4.6076 -0.7791 -8.7092 27 1 3.4038 -1.3987 -8.0992 28 1 4.1904 0.1921 -9.7522 29 1 5.4494 -1.8359 -9.3253 30 6 5.4924 1.0382 -3.8181 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5139 0.8899 36 1 2.2720 2.1231 1.9978 37 1 0.7106 3.3370 3.3888 38 1 -1.5133 4.3712 3.5935 39 1 -3.0835 4.3037 1.6997 40 1 -2.4394 3.1939 -0.4003 41 1 -0.2142 2.1654 -0.6192 42 1 3.5861 0.4922 -1.9004 43 1 5.9528 1.9211 -1.3239 44 1 6.0247 0.3546 -0.4820 45 1 7.9563 1.0986 -2.6837 46 1 7.8814 -0.4683 -1.8430 47 1 9.0088 -0.7113 -4.0290 48 1 7.4676 -1.6023 -4.0199 49 1 7.9678 1.1617 -5.2182 50 1 7.6412 -0.3443 -6.1139 51 1 7.0142 0.7333 -8.6243 52 1 4.4025 1.0366 -3.8298 53 1 5.8573 2.0615 -3.7299 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359375044.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:29 Heat of formation + Delta-G solvation = -12.259644 kcal Electronic energy + Delta-G solvation = -30456.142188 eV Core-core repulsion = 26519.908363 eV Total energy + Delta-G solvation = -3936.233825 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.44103 -40.18327 -39.34356 -37.09326 -36.30464 -34.75326 -33.62612 -32.29780 -32.00165 -31.50478 -30.42168 -27.90542 -27.21926 -26.05942 -23.98863 -23.83885 -23.09574 -22.70096 -22.11953 -21.09748 -20.51487 -19.03873 -18.64636 -17.96173 -17.22842 -16.93126 -16.75008 -16.59936 -16.19830 -15.82578 -15.62666 -15.34547 -15.15851 -14.97812 -14.79742 -14.51652 -14.48487 -14.12208 -14.00625 -13.82492 -13.74817 -13.63232 -13.29255 -13.03322 -12.97622 -12.88822 -12.53225 -12.45109 -12.23843 -12.16457 -12.01939 -11.94455 -11.82254 -11.57798 -11.49257 -11.34437 -11.11825 -11.07497 -10.79163 -10.53497 -10.12623 -9.70170 -8.66953 -8.28686 -7.85901 -5.31888 0.61666 0.77796 1.47240 1.48782 1.49700 1.59399 1.92252 2.51927 2.58055 3.07546 3.29397 3.54253 3.61353 3.86400 3.92431 3.98924 4.01568 4.06536 4.13336 4.21967 4.35248 4.41190 4.45270 4.50612 4.57522 4.61753 4.69711 4.71001 4.76402 4.81946 4.87968 4.89827 4.92665 5.00913 5.09176 5.10970 5.16453 5.21563 5.23370 5.33242 5.36990 5.41984 5.45962 5.47258 5.58172 5.67930 5.68436 5.78911 5.83097 6.00258 6.34538 6.40320 6.51649 6.77627 7.10458 7.15908 7.87300 8.39440 9.20565 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.012990 B = 0.002345 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.991199 B =11937.709488 C =13363.699069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.129 4.129 3 C 0.141 3.859 4 H 0.114 0.886 5 N -0.731 5.731 6 C 0.208 3.792 7 C -0.211 4.211 8 C -0.082 4.082 9 C -0.189 4.189 10 C -0.084 4.084 11 C -0.208 4.208 12 C 0.510 3.490 13 O -0.576 6.576 14 N -0.711 5.711 15 C 0.138 3.862 16 C -0.099 4.099 17 H 0.080 0.920 18 C -0.098 4.098 19 C -0.130 4.130 20 C 0.172 3.828 21 N -0.609 5.609 22 C -0.257 4.257 23 H 0.073 0.927 24 C -0.054 4.054 25 N -0.938 5.938 26 Si 0.965 3.035 27 H -0.261 1.261 28 H -0.296 1.296 29 H -0.293 1.293 30 C 0.152 3.848 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.404 0.596 37 H 0.122 0.878 38 H 0.136 0.864 39 H 0.132 0.868 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.413 0.587 43 H 0.055 0.945 44 H 0.074 0.926 45 H 0.053 0.947 46 H 0.080 0.920 47 H 0.067 0.933 48 H 0.055 0.945 49 H -0.009 1.009 50 H 0.051 0.949 51 H 0.248 0.752 52 H 0.059 0.941 53 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.858 -0.454 19.355 23.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.168 4.168 3 C 0.031 3.969 4 H 0.131 0.869 5 N -0.361 5.361 6 C 0.105 3.895 7 C -0.234 4.234 8 C -0.100 4.100 9 C -0.209 4.209 10 C -0.102 4.102 11 C -0.230 4.230 12 C 0.296 3.704 13 O -0.456 6.456 14 N -0.362 5.362 15 C 0.014 3.986 16 C -0.120 4.120 17 H 0.098 0.902 18 C -0.136 4.136 19 C -0.169 4.169 20 C 0.047 3.953 21 N -0.332 5.332 22 C -0.387 4.387 23 H 0.091 0.909 24 C -0.249 4.249 25 N -0.584 5.584 26 Si 0.793 3.207 27 H -0.185 1.185 28 H -0.223 1.223 29 H -0.220 1.220 30 C 0.026 3.974 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.240 0.760 37 H 0.140 0.860 38 H 0.154 0.846 39 H 0.150 0.850 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.250 0.750 43 H 0.073 0.927 44 H 0.092 0.908 45 H 0.072 0.928 46 H 0.099 0.901 47 H 0.086 0.914 48 H 0.073 0.927 49 H 0.009 0.991 50 H 0.069 0.931 51 H 0.057 0.943 52 H 0.078 0.922 53 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -13.266 -0.174 19.626 23.689 hybrid contribution 0.166 -0.199 -1.198 1.226 sum -13.100 -0.372 18.427 22.612 Atomic orbital electron populations 1.22110 0.93977 1.02359 1.02496 1.21986 0.97864 0.93372 1.03559 1.20814 0.89807 0.96326 0.89945 0.86879 1.44395 1.14610 1.61983 1.15154 1.17945 0.85198 0.91908 0.94426 1.20777 0.99122 1.06086 0.97392 1.21126 0.92673 0.97001 0.99210 1.21188 1.01066 1.04461 0.94224 1.21182 0.95634 0.95343 0.98060 1.21147 0.95356 1.07468 0.99055 1.20967 0.90905 0.77038 0.81459 1.90673 1.66233 1.47009 1.41679 1.45958 1.08248 1.59226 1.22803 1.21284 0.79576 1.00571 0.97208 1.21714 0.97215 0.99974 0.93070 0.90151 1.21343 0.94204 1.00499 0.97543 1.21995 1.00042 0.99119 0.95735 1.20626 0.83282 0.95152 0.96267 1.44319 1.03269 1.71254 1.14387 1.19580 0.94823 1.38257 0.86069 0.90895 1.25825 0.99166 1.00549 0.99401 1.70205 1.25580 1.44833 1.17784 0.85241 0.78519 0.77786 0.79115 1.18508 1.22319 1.22026 1.21035 0.97329 0.93248 0.85769 0.91977 0.92428 0.91298 0.89246 0.91627 0.75994 0.86004 0.84618 0.84966 0.84576 0.84661 0.74968 0.92664 0.90787 0.92846 0.90148 0.91417 0.92668 0.99113 0.93093 0.94282 0.92211 0.97863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.22 71.98 0.59 -1.53 16 2 C -0.13 -1.91 5.55 30.59 0.17 -1.74 16 3 C 0.14 2.58 2.63 44.25 0.12 2.70 16 4 H 0.11 1.91 6.49 -2.39 -0.02 1.90 16 5 N -0.73 -14.63 5.06 -322.49 -1.63 -16.26 16 6 C 0.21 4.10 5.49 38.21 0.21 4.31 16 7 C -0.21 -3.98 9.90 22.40 0.22 -3.76 16 8 C -0.08 -1.34 10.04 22.25 0.22 -1.12 16 9 C -0.19 -3.00 10.04 22.29 0.22 -2.78 16 10 C -0.08 -1.36 10.04 22.25 0.22 -1.13 16 11 C -0.21 -3.71 6.72 22.40 0.15 -3.56 16 12 C 0.51 12.13 7.22 87.66 0.63 12.77 16 13 O -0.58 -17.87 15.84 -3.03 -0.05 -17.92 16 14 N -0.71 -15.66 5.19 -463.06 -2.40 -18.07 16 15 C 0.14 3.46 5.07 86.38 0.44 3.90 16 16 C -0.10 -2.86 2.37 -10.72 -0.03 -2.89 16 17 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 18 C -0.10 -2.86 5.17 30.62 0.16 -2.70 16 19 C -0.13 -4.56 6.08 30.67 0.19 -4.38 16 20 C 0.17 8.10 5.30 86.36 0.46 8.56 16 21 N -0.61 -29.05 2.99 -699.12 -2.09 -31.14 16 22 C -0.26 -13.44 9.58 84.03 0.81 -12.63 16 23 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 24 C -0.05 -2.96 4.92 84.86 0.42 -2.54 16 25 N -0.94 -54.92 11.20 21.65 0.24 -54.67 16 26 Si 0.96 43.53 29.59 68.60 2.03 45.56 16 27 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 28 H -0.30 -13.51 7.11 99.48 0.71 -12.81 16 29 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 30 C 0.15 5.71 5.60 86.36 0.48 6.19 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.95 5.39 -2.38 -0.01 0.94 16 33 H 0.07 0.85 6.35 -2.39 -0.02 0.84 16 34 H 0.09 1.12 7.43 -2.39 -0.02 1.10 16 35 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.40 8.74 7.80 -92.71 -0.72 8.02 16 37 H 0.12 2.08 8.06 -2.91 -0.02 2.06 16 38 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 39 H 0.13 1.56 8.06 -2.91 -0.02 1.53 16 40 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 41 H 0.14 2.11 4.00 -2.91 -0.01 2.10 16 42 H 0.41 7.74 7.07 -92.71 -0.66 7.08 16 43 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 47 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 48 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 49 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 50 H 0.05 2.74 6.06 -2.39 -0.01 2.73 16 51 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 52 H 0.06 2.09 7.14 -2.39 -0.02 2.07 16 53 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 Total: -1.00 -66.76 406.84 1.32 -65.44 By element: Atomic # 1 Polarization: 29.84 SS G_CDS: -0.46 Total: 29.38 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 5.68 Total: -2.32 kcal Atomic # 7 Polarization: -114.25 SS G_CDS: -5.89 Total: -120.14 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.05 Total: -17.92 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -66.76 1.32 -65.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359375044.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.182 kcal (2) G-P(sol) polarization free energy of solvation -66.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds