Wall clock time and date at job start Wed Apr 1 2020 04:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.47079 * 2 1 4 4 H 1.09003 * 109.46943 * 55.21625 * 3 2 1 5 5 N 1.46493 * 109.47113 * 295.21303 * 3 2 1 6 6 C 1.39674 * 120.00057 * 153.44506 * 5 3 2 7 7 C 1.38906 * 120.07213 * 5.71472 * 6 5 3 8 8 C 1.38113 * 119.92463 * 179.76338 * 7 6 5 9 9 C 1.38289 * 120.07069 * 0.51106 * 8 7 6 10 10 C 1.38284 * 120.15207 * 359.74558 * 9 8 7 11 11 C 1.38105 * 120.07297 * 359.97438 * 10 9 8 12 12 C 1.50692 * 109.47057 * 175.21321 * 3 2 1 13 13 O 1.21280 * 119.99979 * 119.99734 * 12 3 2 14 14 N 1.34777 * 120.00240 * 300.00226 * 12 3 2 15 15 C 1.46498 * 120.00154 * 180.02562 * 14 12 3 16 16 C 1.53005 * 109.47025 * 179.97438 * 15 14 12 17 17 H 1.08995 * 109.49883 * 54.99587 * 16 15 14 18 18 C 1.53040 * 109.49573 * 175.06362 * 16 15 14 19 19 C 1.53042 * 109.53795 * 181.31374 * 18 16 15 20 20 C 1.53192 * 109.31272 * 298.63616 * 19 18 16 21 21 N 1.46924 * 108.77636 * 54.63524 * 20 19 18 22 22 C 1.36938 * 120.63126 * 126.43376 * 21 20 19 23 23 H 1.07998 * 120.00289 * 332.44480 * 22 21 20 24 24 C 1.38814 * 119.99529 * 152.44401 * 22 21 20 25 25 N 1.31622 * 119.99674 * 159.90989 * 24 22 21 26 26 Si 1.86798 * 120.00355 * 339.91265 * 24 22 21 27 27 H 1.48494 * 109.47089 * 94.98007 * 26 24 22 28 28 H 1.48500 * 109.46833 * 214.98156 * 26 24 22 29 29 H 1.48498 * 109.47151 * 334.97657 * 26 24 22 30 30 C 1.46933 * 118.76407 * 306.40916 * 21 20 19 31 31 H 1.09000 * 109.46768 * 305.11208 * 1 2 3 32 32 H 1.08997 * 109.46890 * 65.11222 * 1 2 3 33 33 H 1.08995 * 109.47233 * 185.11485 * 1 2 3 34 34 H 1.08993 * 109.47090 * 239.99775 * 2 1 3 35 35 H 1.09004 * 109.46878 * 119.99992 * 2 1 3 36 36 H 0.97005 * 120.00036 * 333.45418 * 5 3 2 37 37 H 1.08003 * 120.04274 * 0.02562 * 7 6 5 38 38 H 1.07994 * 119.96401 * 180.25625 * 8 7 6 39 39 H 1.07993 * 119.92156 * 179.76227 * 9 8 7 40 40 H 1.07994 * 119.96497 * 180.02562 * 10 9 8 41 41 H 1.08001 * 120.03549 * 180.02562 * 11 10 9 42 42 H 0.97002 * 120.00310 * 359.97438 * 14 12 3 43 43 H 1.09004 * 109.47000 * 299.99164 * 15 14 12 44 44 H 1.08993 * 109.47404 * 59.99663 * 15 14 12 45 45 H 1.09000 * 109.46173 * 301.33453 * 18 16 15 46 46 H 1.08997 * 109.46608 * 61.30928 * 18 16 15 47 47 H 1.09009 * 109.49451 * 58.58744 * 19 18 16 48 48 H 1.08997 * 109.50282 * 178.68163 * 19 18 16 49 49 H 1.09007 * 109.58358 * 174.42141 * 20 19 18 50 50 H 1.08995 * 109.58243 * 294.84320 * 20 19 18 51 51 H 0.96998 * 120.00376 * 180.02562 * 25 24 22 52 52 H 1.08997 * 109.56218 * 293.79006 * 30 21 20 53 53 H 1.08999 * 109.61772 * 173.35827 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6084 1.9805 0.8441 5 7 1.6481 2.0990 -1.2496 6 6 1.4849 3.4857 -1.2886 7 6 1.8077 4.2561 -0.1787 8 6 1.6497 5.6274 -0.2224 9 6 1.1608 6.2326 -1.3657 10 6 0.8335 5.4681 -2.4705 11 6 0.9945 4.0969 -2.4356 12 6 3.5423 1.4442 0.1186 13 8 4.2190 1.9445 -0.7548 14 7 4.1340 0.8896 1.1951 15 6 5.5944 0.8918 1.3106 16 6 6.0037 0.2065 2.6159 17 1 5.5662 -0.7910 2.6559 18 6 7.5290 0.0983 2.6795 19 6 7.9381 -0.6163 3.9695 20 6 7.4606 0.2004 5.1744 21 7 6.0156 0.4328 5.0455 22 6 5.1616 0.0977 6.0622 23 1 5.4181 -0.7017 6.7415 24 6 3.9662 0.7855 6.2195 25 7 2.9819 0.2458 6.9068 26 14 3.7543 2.4771 5.4559 27 1 3.0937 2.3436 4.1327 28 1 2.9155 3.3201 6.3453 29 1 5.0854 3.1123 5.2829 30 6 5.5037 1.0321 3.8055 31 1 -0.3633 0.5911 0.8407 32 1 -0.3633 0.4325 -0.9322 33 1 -0.3633 -1.0235 0.0916 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 1.5018 1.5707 -2.0499 37 1 2.1858 3.7837 0.7159 38 1 1.9044 6.2274 0.6387 39 1 1.0346 7.3047 -1.3958 40 1 0.4523 5.9438 -3.3619 41 1 0.7390 3.5004 -3.2990 42 1 3.5928 0.4898 1.8938 43 1 6.0264 0.3540 0.4666 44 1 5.9574 1.9195 1.3108 45 1 7.8890 -0.4682 1.8207 46 1 7.9649 1.0972 2.6641 47 1 7.4823 -1.6062 3.9973 48 1 9.0231 -0.7139 4.0031 49 1 7.6615 -0.3516 6.0927 50 1 7.9838 1.1563 5.1983 51 1 2.1464 0.7262 7.0165 52 1 5.8669 2.0561 3.7180 53 1 4.4138 1.0288 3.8202 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359375517.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:44 Heat of formation + Delta-G solvation = -15.823418 kcal Electronic energy + Delta-G solvation = -31345.205677 eV Core-core repulsion = 27408.817315 eV Total energy + Delta-G solvation = -3936.388362 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.40393 -40.12701 -39.50084 -37.19515 -36.24599 -34.88441 -33.92026 -32.83459 -32.08595 -31.79509 -29.95293 -28.32018 -27.19261 -26.39614 -24.17524 -23.90312 -22.90610 -22.78805 -22.26697 -21.29740 -20.72439 -18.85854 -18.70676 -18.37771 -17.53010 -17.27299 -16.94367 -16.44144 -16.28398 -15.90339 -15.55633 -15.33083 -15.26805 -15.04839 -14.87225 -14.74688 -14.55591 -14.37771 -14.27865 -14.01928 -13.92922 -13.73581 -13.39636 -13.35384 -13.11563 -13.02248 -12.59015 -12.39231 -12.22964 -12.12983 -12.10528 -12.01358 -11.76598 -11.71425 -11.66724 -11.58243 -11.37130 -11.28105 -10.70434 -10.62945 -10.15398 -9.84467 -8.93035 -8.40296 -8.17673 -5.48931 0.51745 0.69712 1.22060 1.38750 1.45018 1.51070 1.99498 2.36617 2.48827 2.99958 3.03369 3.30848 3.56677 3.73330 3.82065 3.83755 3.90359 3.96228 4.04289 4.09253 4.26834 4.29242 4.35683 4.42785 4.46567 4.49669 4.58604 4.59906 4.65035 4.69792 4.71900 4.75512 4.80464 4.87147 4.96123 5.02242 5.07782 5.08911 5.13281 5.18368 5.22297 5.28645 5.32819 5.35997 5.40204 5.57480 5.58969 5.72808 5.86695 5.89127 6.12652 6.27250 6.45408 6.77923 6.91139 7.12169 7.61551 8.02952 9.02117 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.011117 B = 0.003265 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.039364 B = 8573.746894 C = 9080.510045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.121 4.121 3 C 0.139 3.861 4 H 0.100 0.900 5 N -0.713 5.713 6 C 0.213 3.787 7 C -0.219 4.219 8 C -0.088 4.088 9 C -0.188 4.188 10 C -0.076 4.076 11 C -0.199 4.199 12 C 0.491 3.509 13 O -0.566 6.566 14 N -0.725 5.725 15 C 0.133 3.867 16 C -0.105 4.105 17 H 0.078 0.922 18 C -0.099 4.099 19 C -0.124 4.124 20 C 0.137 3.863 21 N -0.620 5.620 22 C -0.246 4.246 23 H 0.055 0.945 24 C -0.025 4.025 25 N -0.951 5.951 26 Si 0.935 3.065 27 H -0.268 1.268 28 H -0.315 1.315 29 H -0.273 1.273 30 C 0.133 3.867 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.410 0.590 37 H 0.097 0.903 38 H 0.124 0.876 39 H 0.137 0.863 40 H 0.148 0.852 41 H 0.139 0.861 42 H 0.406 0.594 43 H 0.079 0.921 44 H 0.053 0.947 45 H 0.084 0.916 46 H 0.062 0.938 47 H 0.055 0.945 48 H 0.088 0.912 49 H 0.054 0.946 50 H 0.029 0.971 51 H 0.262 0.738 52 H 0.019 0.981 53 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.455 2.735 -19.929 20.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.159 4.159 3 C 0.028 3.972 4 H 0.117 0.883 5 N -0.343 5.343 6 C 0.110 3.890 7 C -0.242 4.242 8 C -0.107 4.107 9 C -0.207 4.207 10 C -0.094 4.094 11 C -0.222 4.222 12 C 0.276 3.724 13 O -0.444 6.444 14 N -0.377 5.377 15 C 0.009 3.991 16 C -0.125 4.125 17 H 0.096 0.904 18 C -0.137 4.137 19 C -0.163 4.163 20 C 0.012 3.988 21 N -0.344 5.344 22 C -0.376 4.376 23 H 0.073 0.927 24 C -0.220 4.220 25 N -0.598 5.598 26 Si 0.765 3.235 27 H -0.195 1.195 28 H -0.244 1.244 29 H -0.198 1.198 30 C 0.008 3.992 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.247 0.753 37 H 0.115 0.885 38 H 0.142 0.858 39 H 0.155 0.845 40 H 0.166 0.834 41 H 0.157 0.843 42 H 0.242 0.758 43 H 0.097 0.903 44 H 0.072 0.928 45 H 0.103 0.897 46 H 0.081 0.919 47 H 0.074 0.926 48 H 0.107 0.893 49 H 0.073 0.927 50 H 0.047 0.953 51 H 0.071 0.929 52 H 0.037 0.963 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.041 3.031 -20.300 20.627 hybrid contribution -0.458 0.526 0.702 0.990 sum -2.499 3.556 -19.598 20.074 Atomic orbital electron populations 1.21713 0.93258 1.02811 1.02419 1.21765 0.98194 0.91518 1.04423 1.20924 0.89099 0.97256 0.89890 0.88270 1.44151 1.75338 1.03353 1.11474 1.17945 0.92953 0.83914 0.94203 1.20713 1.09808 0.95103 0.98585 1.21119 0.96991 0.93734 0.98834 1.21176 1.04881 1.00794 0.93884 1.21234 0.96589 0.92968 0.98639 1.20841 1.07766 0.95905 0.97643 1.21905 0.92265 0.77021 0.81183 1.90664 1.66489 1.46096 1.41179 1.46235 1.08417 1.59852 1.23236 1.21350 0.79731 1.00504 0.97523 1.21794 0.98441 0.99776 0.92509 0.90390 1.21380 0.92711 1.01239 0.98396 1.21885 1.01138 0.98780 0.94473 1.21186 0.82476 0.97381 0.97735 1.44498 1.03240 1.73558 1.13153 1.18900 0.99223 1.11836 1.07658 0.92709 1.25754 0.96395 1.00667 0.99177 1.69936 1.04403 1.38818 1.46607 0.86101 0.77254 0.82786 0.77343 1.19459 1.24388 1.19817 1.21344 0.97265 0.94476 0.86115 0.93096 0.91737 0.90898 0.89746 0.89592 0.75251 0.88529 0.85798 0.84548 0.83447 0.84279 0.75836 0.90304 0.92828 0.89730 0.91893 0.92609 0.89334 0.92721 0.95270 0.92903 0.96278 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.74 71.98 0.70 -1.53 16 2 C -0.12 -2.11 5.43 30.60 0.17 -1.95 16 3 C 0.14 3.22 2.07 44.25 0.09 3.31 16 4 H 0.10 2.46 6.66 -2.39 -0.02 2.45 16 5 N -0.71 -15.72 4.26 -322.52 -1.38 -17.10 16 6 C 0.21 5.36 6.61 38.21 0.25 5.62 16 7 C -0.22 -6.24 9.09 22.40 0.20 -6.04 16 8 C -0.09 -2.24 10.04 22.25 0.22 -2.02 16 9 C -0.19 -4.00 10.04 22.29 0.22 -3.77 16 10 C -0.08 -1.47 10.04 22.25 0.22 -1.25 16 11 C -0.20 -4.20 9.90 22.40 0.22 -3.98 16 12 C 0.49 14.31 6.88 87.65 0.60 14.91 16 13 O -0.57 -20.23 16.41 -3.03 -0.05 -20.28 16 14 N -0.72 -20.59 5.19 -463.07 -2.40 -22.99 16 15 C 0.13 3.79 5.07 86.38 0.44 4.22 16 16 C -0.10 -3.20 2.37 -10.71 -0.03 -3.22 16 17 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 18 C -0.10 -2.58 5.17 30.62 0.16 -2.42 16 19 C -0.12 -3.48 6.08 30.67 0.19 -3.29 16 20 C 0.14 5.03 6.52 86.36 0.56 5.59 16 21 N -0.62 -28.03 2.77 -699.07 -1.94 -29.96 16 22 C -0.25 -13.53 10.04 84.03 0.84 -12.69 16 23 H 0.06 3.29 8.06 -2.91 -0.02 3.27 16 24 C -0.02 -1.40 5.24 84.86 0.44 -0.95 16 25 N -0.95 -57.70 13.97 21.65 0.30 -57.40 16 26 Si 0.94 45.66 24.35 68.60 1.67 47.33 16 27 H -0.27 -11.95 6.71 99.48 0.67 -11.28 16 28 H -0.31 -15.88 7.11 99.48 0.71 -15.17 16 29 H -0.27 -13.26 6.45 99.48 0.64 -12.62 16 30 C 0.13 5.32 3.27 86.36 0.28 5.60 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.91 7.89 -2.39 -0.02 0.89 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.09 1.52 7.43 -2.39 -0.02 1.50 16 36 H 0.41 7.35 8.64 -92.70 -0.80 6.55 16 37 H 0.10 2.98 6.19 -2.91 -0.02 2.96 16 38 H 0.12 2.84 8.06 -2.91 -0.02 2.81 16 39 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 40 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 41 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 42 H 0.41 11.23 7.06 -92.71 -0.65 10.58 16 43 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 48 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 49 H 0.05 2.06 7.93 -2.38 -0.02 2.04 16 50 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 51 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 52 H 0.02 0.80 6.97 -2.39 -0.02 0.78 16 53 H 0.05 2.21 3.74 -2.39 -0.01 2.20 16 Total: -1.00 -70.82 411.47 1.35 -69.47 By element: Atomic # 1 Polarization: 35.43 SS G_CDS: -0.66 Total: 34.78 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: 5.80 Total: -3.85 kcal Atomic # 7 Polarization: -122.03 SS G_CDS: -5.41 Total: -127.45 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.05 Total: -20.28 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.67 Total: 47.33 kcal Total: -70.82 1.35 -69.47 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359375517.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.647 kcal (2) G-P(sol) polarization free energy of solvation -70.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds