Wall clock time and date at job start Wed Apr 1 2020 04:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47089 * 2 1 4 4 N 1.46903 * 109.47317 * 119.99833 * 2 1 3 5 5 C 1.46844 * 111.00071 * 180.02562 * 4 2 1 6 6 C 1.53036 * 109.52158 * 185.84334 * 5 4 2 7 7 C 1.53122 * 109.27661 * 300.81945 * 6 5 4 8 8 C 1.50701 * 109.51965 * 177.56151 * 7 6 5 9 9 O 1.21282 * 120.00252 * 348.17959 * 8 7 6 10 10 N 1.34778 * 119.99581 * 168.18082 * 8 7 6 11 11 C 1.46500 * 120.00178 * 353.24329 * 10 8 7 12 12 C 1.50703 * 109.46860 * 268.93462 * 11 10 8 13 13 H 1.08001 * 120.00180 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99620 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99687 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 120.00244 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47222 * 89.99879 * 16 14 12 18 18 H 1.48500 * 109.46941 * 209.99674 * 16 14 12 19 19 H 1.48505 * 109.47014 * 329.99567 * 16 14 12 20 20 C 1.46509 * 119.99653 * 173.24406 * 10 8 7 21 21 C 1.50702 * 109.47029 * 90.00094 * 20 10 8 22 22 C 1.38227 * 119.61761 * 95.01874 * 21 20 10 23 23 C 1.38625 * 119.15739 * 179.74450 * 22 21 20 24 24 C 1.38683 * 118.42141 * 0.47219 * 23 22 21 25 25 C 1.38180 * 119.15995 * 359.50988 * 24 23 22 26 26 N 1.31859 * 119.61615 * 274.99632 * 21 20 10 27 27 C 1.53115 * 109.21287 * 57.62681 * 7 6 5 28 28 C 1.46846 * 111.00128 * 304.21611 * 4 2 1 29 29 H 1.08995 * 109.46790 * 300.00043 * 1 2 3 30 30 H 1.09001 * 109.46802 * 59.99901 * 1 2 3 31 31 H 1.09003 * 109.47102 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47428 * 239.99876 * 2 1 3 33 33 H 1.09001 * 109.47380 * 299.99745 * 3 2 1 34 34 H 1.09004 * 109.47322 * 60.00146 * 3 2 1 35 35 H 1.09002 * 109.47002 * 180.02562 * 3 2 1 36 36 H 1.08989 * 109.46286 * 65.82729 * 5 4 2 37 37 H 1.09007 * 109.46236 * 305.85630 * 5 4 2 38 38 H 1.09002 * 109.50483 * 180.87744 * 6 5 4 39 39 H 1.09004 * 109.50715 * 60.75845 * 6 5 4 40 40 H 1.08999 * 109.51943 * 297.68493 * 7 6 5 41 41 H 1.08990 * 109.47215 * 28.93565 * 11 10 8 42 42 H 1.09004 * 109.46855 * 148.93889 * 11 10 8 43 43 H 0.96996 * 119.99896 * 180.02562 * 15 14 12 44 44 H 1.08999 * 109.47187 * 329.99975 * 20 10 8 45 45 H 1.09006 * 109.46756 * 209.99939 * 20 10 8 46 46 H 1.07995 * 120.42250 * 359.95522 * 22 21 20 47 47 H 1.08002 * 120.79278 * 180.23257 * 23 22 21 48 48 H 1.08000 * 120.41309 * 179.77824 * 24 23 22 49 49 H 1.08004 * 119.61450 * 180.24956 * 25 24 23 50 50 H 1.09006 * 109.50499 * 62.31481 * 27 7 6 51 51 H 1.09003 * 109.50170 * 182.43702 * 27 7 6 52 52 H 1.09000 * 109.45787 * 294.17076 * 28 4 2 53 53 H 1.08993 * 109.46572 * 54.14734 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.4876 -0.7115 1.2337 6 6 3.9607 -1.5627 2.4143 7 6 3.4088 -0.9735 3.7154 8 6 3.8216 -1.8415 4.8761 9 8 4.3013 -2.9369 4.6737 10 7 3.6576 -1.4005 6.1391 11 6 3.2180 -0.0245 6.3832 12 6 4.4225 0.8710 6.5193 13 1 5.4160 0.4567 6.4322 14 6 4.2560 2.2194 6.7540 15 7 5.3071 3.0010 6.8722 16 14 2.5375 2.9362 6.9039 17 1 2.1034 2.8886 8.3232 18 1 2.5465 4.3455 6.4360 19 1 1.5965 2.1442 6.0716 20 6 3.9191 -2.2972 7.2678 21 6 5.3633 -2.1765 7.6812 22 6 5.7107 -1.3177 8.7071 23 6 7.0413 -1.2181 9.0831 24 6 7.9782 -1.9821 8.4035 25 6 7.5560 -2.8189 7.3882 26 7 6.2807 -2.8916 7.0603 27 6 1.8807 -0.9188 3.6354 28 6 1.4684 -0.0872 2.4185 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 3.1300 1.4425 -0.0005 36 1 3.8615 0.3060 1.3467 37 1 3.8671 -1.1366 0.3044 38 1 5.0501 -1.5639 2.4486 39 1 3.5986 -2.5839 2.2949 40 1 3.8026 0.0332 3.8552 41 1 2.6055 0.3149 5.5480 42 1 2.6323 0.0122 7.3018 43 1 5.1900 3.9495 7.0377 44 1 3.7108 -3.3251 6.9711 45 1 3.2773 -2.0236 8.1054 46 1 4.9548 -0.7343 9.2116 47 1 7.3417 -0.5584 9.8837 48 1 9.0240 -1.9268 8.6675 49 1 8.2789 -3.4201 6.8568 50 1 1.4850 -1.9296 3.5357 51 1 1.4851 -0.4602 4.5417 52 1 1.8521 0.9273 2.5258 53 1 0.3810 -0.0588 2.3501 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360134241.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:47 Heat of formation + Delta-G solvation = -13.607916 kcal Electronic energy + Delta-G solvation = -32179.114654 eV Core-core repulsion = 28242.822363 eV Total energy + Delta-G solvation = -3936.292290 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.55195 -40.81665 -39.70680 -36.86843 -35.93690 -34.58770 -33.34061 -32.85312 -31.91192 -31.23780 -29.96945 -28.10923 -27.86980 -25.71842 -24.52630 -24.25759 -23.96467 -23.11014 -21.74611 -20.32191 -19.76614 -19.04133 -18.03973 -17.69882 -17.30375 -17.04969 -16.75541 -16.55640 -16.09363 -16.00656 -15.73381 -15.32481 -15.11776 -14.78620 -14.74305 -14.62608 -14.35900 -14.06386 -14.03688 -13.81127 -13.60719 -13.57989 -13.29676 -13.06381 -12.85934 -12.76196 -12.64516 -12.62472 -12.33907 -12.31979 -12.12562 -11.94051 -11.89614 -11.67734 -11.64422 -11.50326 -11.21322 -10.76371 -10.70409 -10.49285 -10.30978 -9.83709 -9.37792 -9.19519 -8.24286 -6.29420 0.23833 0.48611 1.39757 1.41784 1.50197 1.81162 2.31217 2.36399 2.94565 3.05772 3.10082 3.47097 3.63327 3.79738 3.85577 3.91266 4.03046 4.04540 4.15685 4.25377 4.29481 4.31746 4.33967 4.41212 4.43153 4.51422 4.58756 4.59588 4.64746 4.70684 4.75160 4.77728 4.80883 4.83648 4.85364 4.89440 4.93282 4.94791 5.03916 5.07538 5.18339 5.20858 5.28587 5.34028 5.35369 5.38296 5.44682 5.50490 5.73974 5.88582 6.15938 6.24481 6.25142 6.65293 6.76984 7.20540 7.30402 7.43683 8.91751 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.010586 B = 0.004080 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.292685 B = 6860.730984 C = 8471.400777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.075 3.925 3 C -0.187 4.187 4 N -0.535 5.535 5 C 0.063 3.937 6 C -0.086 4.086 7 C -0.101 4.101 8 C 0.518 3.482 9 O -0.570 6.570 10 N -0.591 5.591 11 C 0.209 3.791 12 C -0.520 4.520 13 H 0.024 0.976 14 C 0.022 3.978 15 N -0.943 5.943 16 Si 0.930 3.070 17 H -0.263 1.263 18 H -0.292 1.292 19 H -0.232 1.232 20 C 0.168 3.832 21 C 0.100 3.900 22 C -0.144 4.144 23 C -0.089 4.089 24 C -0.172 4.172 25 C 0.070 3.930 26 N -0.494 5.494 27 C -0.099 4.099 28 C 0.055 3.945 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.031 0.969 37 H 0.089 0.911 38 H 0.049 0.951 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.056 0.944 42 H 0.048 0.952 43 H 0.264 0.736 44 H 0.082 0.918 45 H 0.113 0.887 46 H 0.135 0.865 47 H 0.151 0.849 48 H 0.162 0.838 49 H 0.169 0.831 50 H 0.073 0.927 51 H 0.077 0.923 52 H 0.030 0.970 53 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.890 -4.910 -5.640 10.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.033 4.033 3 C -0.245 4.245 4 N -0.259 5.259 5 C -0.065 4.065 6 C -0.124 4.124 7 C -0.122 4.122 8 C 0.307 3.693 9 O -0.450 6.450 10 N -0.321 5.321 11 C 0.088 3.912 12 C -0.559 4.559 13 H 0.042 0.958 14 C -0.177 4.177 15 N -0.583 5.583 16 Si 0.753 3.247 17 H -0.188 1.188 18 H -0.218 1.218 19 H -0.155 1.155 20 C 0.045 3.955 21 C -0.038 4.038 22 C -0.164 4.164 23 C -0.115 4.115 24 C -0.191 4.191 25 C -0.087 4.087 26 N -0.204 5.204 27 C -0.137 4.137 28 C -0.072 4.072 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.049 0.951 37 H 0.107 0.893 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.101 0.899 45 H 0.131 0.869 46 H 0.153 0.847 47 H 0.168 0.832 48 H 0.180 0.820 49 H 0.186 0.814 50 H 0.091 0.909 51 H 0.096 0.904 52 H 0.048 0.952 53 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.046 -6.362 -6.407 12.094 hybrid contribution 0.916 2.341 1.147 2.763 sum -7.130 -4.021 -5.261 9.730 Atomic orbital electron populations 1.21886 0.93184 1.02550 1.02403 1.21800 0.96609 0.92158 0.92767 1.22478 1.01164 0.98277 1.02615 1.62238 1.07396 1.53858 1.02447 1.22016 0.88073 0.97990 0.98390 1.21272 0.99024 0.99881 0.92215 1.21287 0.98813 0.99053 0.93071 1.20907 0.77053 0.86723 0.84638 1.90624 1.45254 1.23720 1.85365 1.47896 1.66028 1.13422 1.04745 1.19887 0.94849 0.78065 0.98414 1.21373 0.92730 0.92712 1.49036 0.95787 1.25688 1.00626 0.97126 0.94227 1.70069 1.31974 1.05581 1.50657 0.85971 0.80622 0.78033 0.80050 1.18829 1.21808 1.15531 1.20293 0.89996 0.95213 0.90027 1.21715 0.96810 0.93131 0.92175 1.22055 0.98218 0.97842 0.98291 1.21872 0.92841 0.97310 0.99501 1.22405 1.01911 0.97471 0.97358 1.23131 0.92456 0.97640 0.95521 1.67526 1.02804 1.23436 1.26661 1.21586 0.91624 1.01732 0.98762 1.22145 1.01016 0.95214 0.88870 0.92533 0.90774 0.91916 0.89285 0.90609 0.93235 0.93302 0.95126 0.89263 0.93269 0.91238 0.90424 0.92654 0.93435 0.92678 0.89927 0.86926 0.84697 0.83159 0.82009 0.81403 0.90852 0.90429 0.95201 0.88166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.84 71.98 0.64 -1.66 16 2 C 0.07 1.45 3.03 44.91 0.14 1.59 16 3 C -0.19 -3.68 8.50 71.98 0.61 -3.07 16 4 N -0.53 -13.18 4.68 -871.11 -4.08 -17.26 16 5 C 0.06 1.72 4.89 86.33 0.42 2.15 16 6 C -0.09 -2.88 4.80 30.65 0.15 -2.73 16 7 C -0.10 -3.68 1.73 -11.46 -0.02 -3.70 16 8 C 0.52 21.85 6.89 87.66 0.60 22.46 16 9 O -0.57 -26.87 15.59 -3.04 -0.05 -26.92 16 10 N -0.59 -24.05 2.44 -830.46 -2.03 -26.07 16 11 C 0.21 8.68 3.79 85.63 0.32 9.01 16 12 C -0.52 -26.81 9.56 25.60 0.24 -26.57 16 13 H 0.02 1.48 8.06 -2.91 -0.02 1.45 16 14 C 0.02 1.14 5.47 84.65 0.46 1.60 16 15 N -0.94 -54.92 13.96 21.45 0.30 -54.63 16 16 Si 0.93 38.49 27.47 68.60 1.88 40.38 16 17 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 18 H -0.29 -12.41 7.11 99.48 0.71 -11.71 16 19 H -0.23 -8.41 6.54 99.48 0.65 -7.76 16 20 C 0.17 6.28 5.71 85.63 0.49 6.77 16 21 C 0.10 4.03 6.33 42.55 0.27 4.30 16 22 C -0.14 -5.38 9.47 22.36 0.21 -5.17 16 23 C -0.09 -2.98 10.18 22.47 0.23 -2.75 16 24 C -0.17 -5.31 10.11 22.36 0.23 -5.08 16 25 C 0.07 2.44 11.18 84.67 0.95 3.39 16 26 N -0.49 -20.69 10.27 -183.88 -1.89 -22.57 16 27 C -0.10 -2.96 5.07 30.65 0.16 -2.80 16 28 C 0.06 1.41 4.67 86.33 0.40 1.82 16 29 H 0.06 0.93 6.22 -2.39 -0.01 0.92 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 1.60 8.14 -2.39 -0.02 1.59 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.05 1.07 6.63 -2.38 -0.02 1.06 16 35 H 0.05 1.06 6.54 -2.39 -0.02 1.04 16 36 H 0.03 0.88 6.63 -2.39 -0.02 0.87 16 37 H 0.09 2.13 8.12 -2.38 -0.02 2.11 16 38 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.07 2.43 7.89 -2.39 -0.02 2.41 16 40 H 0.08 3.22 7.29 -2.39 -0.02 3.21 16 41 H 0.06 2.19 3.50 -2.39 -0.01 2.18 16 42 H 0.05 1.80 7.34 -2.38 -0.02 1.78 16 43 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 44 H 0.08 3.12 7.53 -2.39 -0.02 3.11 16 45 H 0.11 3.43 7.80 -2.38 -0.02 3.42 16 46 H 0.14 4.82 8.06 -2.91 -0.02 4.80 16 47 H 0.15 4.18 8.06 -2.91 -0.02 4.15 16 48 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 49 H 0.17 4.83 8.06 -2.91 -0.02 4.81 16 50 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 51 H 0.08 2.28 6.01 -2.39 -0.01 2.27 16 52 H 0.03 0.83 6.71 -2.39 -0.02 0.81 16 53 H 0.10 2.16 5.90 -2.39 -0.01 2.14 16 Total: -1.00 -69.60 406.93 1.48 -68.12 By element: Atomic # 1 Polarization: 38.56 SS G_CDS: 0.84 Total: 39.40 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: 6.50 Total: -0.45 kcal Atomic # 7 Polarization: -112.83 SS G_CDS: -7.70 Total: -120.53 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.05 Total: -26.92 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 1.88 Total: 40.38 kcal Total: -69.60 1.48 -68.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360134241.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.517 kcal (2) G-P(sol) polarization free energy of solvation -69.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds