Wall clock time and date at job start Wed Apr 1 2020 03:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46860 * 2 1 4 4 C 1.53010 * 109.47036 * 240.00447 * 2 1 3 5 5 N 1.46494 * 109.47462 * 120.00260 * 2 1 3 6 6 C 1.34780 * 120.00050 * 59.99932 * 5 2 1 7 7 O 1.21585 * 119.99721 * 355.01156 * 6 5 2 8 8 N 1.34775 * 120.00217 * 175.01550 * 6 5 2 9 9 C 1.47078 * 120.88122 * 185.14631 * 8 6 5 10 10 C 1.53234 * 108.52137 * 231.15983 * 9 8 6 11 11 N 1.46900 * 109.34290 * 306.17300 * 10 9 8 12 12 C 1.46901 * 110.99847 * 187.25028 * 11 10 9 13 13 C 1.50705 * 109.46905 * 170.00028 * 12 11 10 14 14 C 1.38634 * 119.75059 * 89.99933 * 13 12 11 15 15 C 1.37620 * 120.25206 * 180.02562 * 14 13 12 16 16 C 1.40714 * 119.74273 * 359.97438 * 15 14 13 17 17 C 1.41392 * 120.24216 * 180.02562 * 16 15 14 18 18 H 1.08008 * 119.99900 * 150.83326 * 17 16 15 19 19 C 1.39944 * 120.00519 * 330.56161 * 17 16 15 20 20 N 1.30823 * 119.99321 * 350.32914 * 19 17 16 21 21 Si 1.86795 * 120.00460 * 170.33187 * 19 17 16 22 22 H 1.48497 * 109.47285 * 59.99454 * 21 19 17 23 23 H 1.48493 * 109.47416 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46695 * 300.00049 * 21 19 17 25 25 C 1.40717 * 119.51020 * 0.27830 * 16 15 14 26 26 C 1.37617 * 119.74398 * 359.46267 * 25 16 15 27 27 C 1.46900 * 111.26776 * 63.10558 * 11 10 9 28 28 C 1.47086 * 120.87778 * 5.12605 * 8 6 5 29 29 H 1.09001 * 109.47230 * 299.99663 * 1 2 3 30 30 H 1.08998 * 109.47296 * 59.99984 * 1 2 3 31 31 H 1.09002 * 109.47211 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46622 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47179 * 300.00088 * 3 2 1 34 34 H 1.09001 * 109.46924 * 60.00150 * 3 2 1 35 35 H 1.09002 * 109.46846 * 299.99888 * 4 2 1 36 36 H 1.08997 * 109.46986 * 59.99937 * 4 2 1 37 37 H 1.09001 * 109.46849 * 179.97438 * 4 2 1 38 38 H 0.97002 * 119.99988 * 240.00227 * 5 2 1 39 39 H 1.09002 * 109.62747 * 111.45391 * 9 8 6 40 40 H 1.08993 * 109.78773 * 350.96857 * 9 8 6 41 41 H 1.09002 * 109.49616 * 186.21063 * 10 9 8 42 42 H 1.09002 * 109.49173 * 66.13416 * 10 9 8 43 43 H 1.09001 * 109.47179 * 50.00298 * 12 11 10 44 44 H 1.09001 * 109.47339 * 289.99837 * 12 11 10 45 45 H 1.08009 * 119.87298 * 359.97438 * 14 13 12 46 46 H 1.08000 * 120.12609 * 179.97438 * 15 14 13 47 47 H 0.97001 * 119.99960 * 179.97438 * 20 19 17 48 48 H 1.07998 * 120.12563 * 179.69950 * 25 16 15 49 49 H 1.08001 * 119.87324 * 180.27280 * 26 25 16 50 50 H 1.09002 * 109.49786 * 56.85235 * 27 11 10 51 51 H 1.09000 * 109.49341 * 176.93860 * 27 11 10 52 52 H 1.08999 * 109.62185 * 248.54503 * 28 8 6 53 53 H 1.08994 * 109.63039 * 9.12707 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 2.0184 -0.6906 1.1961 6 6 1.6928 -1.9810 1.4093 7 8 0.9211 -2.5454 0.6582 8 7 2.2226 -2.6457 2.4552 9 6 1.9703 -4.0825 2.6426 10 6 1.4808 -4.3077 4.0771 11 7 2.4429 -3.7181 5.0177 12 6 2.1005 -4.0604 6.4047 13 6 3.2298 -3.6536 7.3159 14 6 3.2402 -2.3848 7.8744 15 6 4.2666 -2.0023 8.7075 16 6 5.3080 -2.9049 8.9920 17 6 6.3675 -2.5232 9.8470 18 1 6.8815 -3.2685 10.4358 19 6 6.7539 -1.1805 9.9260 20 7 6.2703 -0.3097 9.0778 21 14 7.9602 -0.6315 11.2423 22 1 9.2411 -1.3643 11.0765 23 1 8.2038 0.8276 11.1131 24 1 7.3942 -0.9215 12.5842 25 6 5.2898 -4.1883 8.4152 26 6 4.2505 -4.5510 7.5893 27 6 2.5360 -2.2626 4.8424 28 6 3.0688 -1.9535 3.4392 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2494 36 1 1.6766 -0.2073 -2.1393 37 1 3.1300 -0.7208 -1.2496 38 1 2.5760 -0.2192 1.8346 39 1 2.8921 -4.6406 2.4785 40 1 1.2087 -4.4183 1.9389 41 1 1.3941 -5.3773 4.2682 42 1 0.5076 -3.8345 4.2079 43 1 1.9387 -5.1354 6.4843 44 1 1.1915 -3.5336 6.6952 45 1 2.4400 -1.6936 7.6542 46 1 4.2728 -1.0132 9.1412 47 1 6.5378 0.6210 9.1327 48 1 6.0865 -4.8872 8.6230 49 1 4.2322 -5.5370 7.1490 50 1 1.5481 -1.8178 4.9624 51 1 3.2147 -1.8490 5.5883 52 1 4.0961 -2.3070 3.3515 53 1 3.0320 -0.8787 3.2621 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360329429.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:42 Heat of formation + Delta-G solvation = -16.222598 kcal Electronic energy + Delta-G solvation = -30750.716986 eV Core-core repulsion = 26814.311314 eV Total energy + Delta-G solvation = -3936.405672 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.65062 -40.03982 -38.95157 -37.49763 -36.07818 -35.15286 -33.21963 -31.90146 -31.81397 -31.09119 -29.18313 -28.23472 -28.16692 -27.07020 -24.91326 -24.58368 -23.00416 -22.57296 -21.53435 -21.01516 -20.25788 -19.16311 -19.14433 -17.24234 -17.10765 -16.68918 -16.36921 -16.30379 -16.11716 -15.69854 -15.62555 -15.28877 -15.20634 -15.07954 -15.02836 -14.44445 -14.29575 -14.09921 -13.79987 -13.55004 -13.37636 -13.15917 -13.01568 -12.96658 -12.86652 -12.75291 -12.66638 -12.53380 -12.42449 -12.33086 -12.25571 -12.11868 -12.06114 -11.99394 -11.86704 -11.33337 -11.19912 -11.01851 -10.83531 -10.17541 -9.63844 -9.31331 -9.20293 -9.02282 -8.53809 -6.31283 0.97839 1.20652 1.39577 1.50064 1.52432 1.64533 2.14470 2.23718 2.72027 2.84977 3.11994 3.79167 3.84237 3.93558 3.99596 4.03110 4.07556 4.15729 4.21069 4.27716 4.38927 4.46121 4.49784 4.64327 4.70072 4.70875 4.74467 4.75609 4.78001 4.81104 4.87073 4.87731 4.92289 4.96286 5.02034 5.06932 5.09292 5.21194 5.21694 5.28666 5.42284 5.42851 5.52486 5.54273 5.71158 5.76787 5.90350 5.99448 6.09706 6.15718 6.23282 6.33263 6.45995 6.76217 6.97214 7.00407 7.08818 7.58381 8.41597 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.013851 B = 0.002394 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.036474 B =11693.109897 C =13183.072978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.179 3.821 3 C -0.149 4.149 4 C -0.157 4.157 5 N -0.734 5.734 6 C 0.706 3.294 7 O -0.619 6.619 8 N -0.631 5.631 9 C 0.138 3.862 10 C 0.047 3.953 11 N -0.537 5.537 12 C 0.125 3.875 13 C -0.185 4.185 14 C -0.096 4.096 15 C -0.179 4.179 16 C 0.078 3.922 17 C -0.504 4.504 18 H 0.070 0.930 19 C 0.033 3.967 20 N -0.833 5.833 21 Si 0.980 3.020 22 H -0.263 1.263 23 H -0.268 1.268 24 H -0.263 1.263 25 C -0.238 4.238 26 C -0.075 4.075 27 C 0.045 3.955 28 C 0.125 3.875 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.079 0.921 37 H 0.055 0.945 38 H 0.403 0.597 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.028 0.972 43 H 0.085 0.915 44 H 0.030 0.970 45 H 0.100 0.900 46 H 0.099 0.901 47 H 0.285 0.715 48 H 0.093 0.907 49 H 0.114 0.886 50 H 0.029 0.971 51 H 0.079 0.921 52 H 0.073 0.927 53 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.200 2.847 -15.563 17.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.093 3.907 3 C -0.206 4.206 4 C -0.215 4.215 5 N -0.392 5.392 6 C 0.408 3.592 7 O -0.501 6.501 8 N -0.368 5.368 9 C 0.015 3.985 10 C -0.082 4.082 11 N -0.262 5.262 12 C -0.001 4.001 13 C -0.186 4.186 14 C -0.115 4.115 15 C -0.198 4.198 16 C 0.075 3.925 17 C -0.534 4.534 18 H 0.088 0.912 19 C -0.180 4.180 20 N -0.460 5.460 21 Si 0.801 3.199 22 H -0.187 1.187 23 H -0.192 1.192 24 H -0.187 1.187 25 C -0.257 4.257 26 C -0.093 4.093 27 C -0.084 4.084 28 C 0.001 3.999 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.241 0.759 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.121 0.879 42 H 0.046 0.954 43 H 0.104 0.896 44 H 0.048 0.952 45 H 0.118 0.882 46 H 0.117 0.883 47 H 0.095 0.905 48 H 0.111 0.889 49 H 0.132 0.868 50 H 0.048 0.952 51 H 0.098 0.902 52 H 0.092 0.908 53 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.283 2.503 -16.315 18.468 hybrid contribution 0.206 0.803 1.350 1.584 sum -8.078 3.306 -14.965 17.324 Atomic orbital electron populations 1.22210 0.94887 1.02537 1.02127 1.20353 0.93975 0.92624 0.83749 1.22053 1.02047 0.92510 1.04024 1.22160 1.00863 1.01141 0.97312 1.45539 1.56546 1.10230 1.26894 1.15996 0.80242 0.82000 0.80985 1.90805 1.40294 1.69132 1.49849 1.47457 1.52898 1.10442 1.25988 1.21535 1.01785 0.79396 0.95831 1.22496 0.92758 1.01130 0.91780 1.61971 1.49077 1.10645 1.04499 1.20688 0.93373 1.00476 0.85596 1.19251 0.99658 0.94774 1.04947 1.20720 0.97432 0.95545 0.97824 1.21273 0.94853 1.00316 1.03386 1.17956 0.91881 0.91888 0.90727 1.19775 1.15940 0.94003 1.23728 0.91179 1.26648 0.98107 0.96062 0.97184 1.69836 1.39377 1.04433 1.32382 0.85285 0.78349 0.77748 0.78499 1.18704 1.19249 1.18702 1.21226 1.01019 0.98382 1.05113 1.20637 0.93493 0.98436 0.96763 1.22414 0.99761 0.88859 0.97336 1.21715 0.94478 0.97196 0.86475 0.93067 0.90422 0.92885 0.91281 0.89243 0.91479 0.93442 0.90219 0.92639 0.75931 0.90758 0.89181 0.87946 0.95370 0.89645 0.95202 0.88179 0.88266 0.90478 0.88926 0.86779 0.95241 0.90232 0.90832 0.88532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 8.40 71.98 0.60 -2.44 16 2 C 0.18 3.12 1.06 3.61 0.00 3.12 16 3 C -0.15 -1.68 8.59 71.98 0.62 -1.06 16 4 C -0.16 -2.88 8.40 71.99 0.60 -2.28 16 5 N -0.73 -14.81 5.01 -438.00 -2.20 -17.01 16 6 C 0.71 18.54 7.71 179.05 1.38 19.92 16 7 O -0.62 -19.79 12.04 -3.98 -0.05 -19.84 16 8 N -0.63 -15.62 3.01 -835.95 -2.52 -18.14 16 9 C 0.14 3.28 6.61 86.35 0.57 3.85 16 10 C 0.05 1.10 5.62 86.38 0.49 1.59 16 11 N -0.54 -15.23 4.62 -899.80 -4.16 -19.39 16 12 C 0.13 3.83 5.11 85.56 0.44 4.27 16 13 C -0.18 -7.23 4.91 -19.67 -0.10 -7.33 16 14 C -0.10 -4.17 7.82 22.22 0.17 -3.99 16 15 C -0.18 -9.11 8.66 22.73 0.20 -8.92 16 16 C 0.08 4.14 5.55 -21.29 -0.12 4.02 16 17 C -0.50 -27.20 9.06 23.46 0.21 -26.99 16 18 H 0.07 3.67 7.87 -2.91 -0.02 3.65 16 19 C 0.03 1.67 5.27 85.26 0.45 2.12 16 20 N -0.83 -43.09 10.83 21.83 0.24 -42.85 16 21 Si 0.98 38.34 29.57 68.60 2.03 40.37 16 22 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 23 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 24 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 25 C -0.24 -11.48 9.80 22.73 0.22 -11.26 16 26 C -0.07 -3.11 9.67 22.22 0.21 -2.90 16 27 C 0.05 1.27 5.33 86.38 0.46 1.73 16 28 C 0.12 2.94 6.54 86.35 0.56 3.50 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.37 6.00 -2.39 -0.01 1.35 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.05 1.18 6.34 -2.39 -0.02 1.16 16 36 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.40 6.67 6.01 -92.71 -0.56 6.12 16 39 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.09 2.22 7.05 -2.39 -0.02 2.21 16 41 H 0.10 2.04 7.99 -2.39 -0.02 2.02 16 42 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.09 2.34 7.91 -2.39 -0.02 2.32 16 44 H 0.03 0.89 8.06 -2.39 -0.02 0.88 16 45 H 0.10 3.90 7.92 -2.91 -0.02 3.87 16 46 H 0.10 5.37 6.23 -2.91 -0.02 5.35 16 47 H 0.28 13.39 8.30 -92.71 -0.77 12.62 16 48 H 0.09 4.30 8.06 -2.91 -0.02 4.28 16 49 H 0.11 4.11 8.06 -2.91 -0.02 4.09 16 50 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.08 2.67 5.65 -2.39 -0.01 2.66 16 52 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 53 H 0.10 1.80 5.74 -2.39 -0.01 1.79 16 Total: -1.00 -62.77 407.25 0.67 -62.10 By element: Atomic # 1 Polarization: 37.45 SS G_CDS: 0.34 Total: 37.79 kcal Atomic # 6 Polarization: -30.03 SS G_CDS: 6.99 Total: -23.04 kcal Atomic # 7 Polarization: -88.75 SS G_CDS: -8.63 Total: -97.38 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.05 Total: -19.84 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.37 kcal Total: -62.77 0.67 -62.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360329429.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.879 kcal (2) G-P(sol) polarization free energy of solvation -62.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds