Wall clock time and date at job start Wed Apr 1 2020 03:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47588 * 2 1 4 4 C 1.53006 * 109.46960 * 240.00018 * 2 1 3 5 5 C 1.50706 * 109.47131 * 60.00377 * 4 2 1 6 6 H 1.07999 * 119.99437 * 359.97438 * 5 4 2 7 7 C 1.37870 * 119.99749 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00490 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99706 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46769 * 90.00178 * 9 7 5 11 11 H 1.48494 * 109.47402 * 210.00055 * 9 7 5 12 12 H 1.48501 * 109.47217 * 330.00513 * 9 7 5 13 13 C 1.52999 * 109.47106 * 120.00403 * 2 1 3 14 14 N 1.46896 * 109.47141 * 299.99812 * 13 2 1 15 15 C 1.46903 * 111.00154 * 180.02562 * 14 13 2 16 16 H 1.08990 * 110.27014 * 327.08929 * 15 14 13 17 17 C 1.54597 * 110.30746 * 89.28402 * 15 14 13 18 18 C 1.54941 * 102.91680 * 140.87272 * 17 15 14 19 19 N 1.48535 * 103.23141 * 322.58218 * 18 17 15 20 20 C 1.38871 * 110.99924 * 159.72005 * 19 18 17 21 21 C 1.38961 * 120.17838 * 306.58246 * 20 19 18 22 22 C 1.37955 * 120.06383 * 180.02562 * 21 20 19 23 23 C 1.38610 * 120.42376 * 359.97438 * 22 21 20 24 24 C 1.37751 * 120.34963 * 359.71656 * 23 22 21 25 25 C 1.39736 * 119.92744 * 0.58169 * 24 23 22 26 26 C 1.47428 * 120.20659 * 179.69216 * 25 24 23 27 27 N 1.34778 * 120.00123 * 354.33625 * 26 25 24 28 28 O 1.21598 * 119.99923 * 174.60243 * 26 25 24 29 29 C 1.47908 * 105.81424 * 39.20793 * 19 18 17 30 30 H 1.08998 * 109.47058 * 299.99797 * 1 2 3 31 31 H 1.09005 * 109.46868 * 59.99949 * 1 2 3 32 32 H 1.09001 * 109.46924 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47838 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.46989 * 300.00306 * 3 2 1 35 35 H 1.09000 * 109.46673 * 59.99475 * 3 2 1 36 36 H 1.09005 * 109.46674 * 180.02562 * 4 2 1 37 37 H 1.08992 * 109.47384 * 299.99943 * 4 2 1 38 38 H 0.97002 * 119.99984 * 180.02562 * 8 7 5 39 39 H 1.09004 * 109.47361 * 179.97438 * 13 2 1 40 40 H 1.09001 * 109.47262 * 60.00166 * 13 2 1 41 41 H 1.00894 * 111.00072 * 56.04184 * 14 13 2 42 42 H 1.08996 * 110.72389 * 259.23120 * 17 15 14 43 43 H 1.08993 * 110.72686 * 22.33929 * 17 15 14 44 44 H 1.09004 * 110.66367 * 204.14509 * 18 17 15 45 45 H 1.08997 * 110.66672 * 81.02242 * 18 17 15 46 46 H 1.08004 * 119.96269 * 0.02562 * 21 20 19 47 47 H 1.07997 * 119.78708 * 179.97438 * 22 21 20 48 48 H 1.07992 * 119.82203 * 179.97438 * 23 22 21 49 49 H 1.08002 * 120.03295 * 180.30138 * 24 23 22 50 50 H 0.97003 * 120.00216 * 180.27524 * 27 26 25 51 51 H 0.96996 * 120.00130 * 0.27028 * 27 26 25 52 52 H 1.09005 * 109.91367 * 94.02519 * 29 19 18 53 53 H 1.09000 * 109.91295 * 215.31422 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0108 -2.4798 6 1 0.9165 0.8671 -2.3806 7 6 1.8712 -0.4815 -3.7320 8 7 2.6272 -1.5509 -3.8527 9 14 1.2480 0.3987 -5.2572 10 1 2.2255 1.4411 -5.6612 11 1 1.0837 -0.5804 -6.3615 12 1 -0.0606 1.0354 -4.9614 13 6 2.0400 -0.7213 1.2492 14 7 1.5504 -0.0289 2.4486 15 6 2.0219 -0.6948 3.6703 16 1 2.1018 -1.7695 3.5077 17 6 3.3862 -0.1128 4.1060 18 6 3.2623 -0.0580 5.6495 19 7 1.8452 0.3326 5.8632 20 6 1.4248 -0.0009 7.1440 21 6 1.5754 -1.3005 7.6124 22 6 1.1563 -1.6294 8.8850 23 6 0.5838 -0.6699 9.7053 24 6 0.4320 0.6251 9.2608 25 6 0.8456 0.9728 7.9722 26 6 0.6798 2.3554 7.4878 27 7 0.0259 3.2602 8.2429 28 8 1.1289 2.6781 6.4048 29 6 1.0666 -0.4009 4.8417 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9562 0.8900 36 1 3.1300 -0.7217 -1.2490 37 1 1.6767 -1.7489 -1.2493 38 1 2.8621 -1.8818 -4.7338 39 1 3.1300 -0.7218 1.2490 40 1 1.6767 -1.7490 1.2491 41 1 0.5439 0.0413 2.4401 42 1 4.2003 -0.7733 3.8076 43 1 3.5298 0.8852 3.6922 44 1 3.9351 0.6934 6.0630 45 1 3.4617 -1.0365 6.0864 46 1 2.0209 -2.0538 6.9795 47 1 1.2751 -2.6408 9.2443 48 1 0.2589 -0.9381 10.6996 49 1 -0.0103 1.3697 9.9061 50 1 -0.0866 4.1688 7.9224 51 1 -0.3322 3.0028 9.1068 52 1 0.6933 -1.3358 5.2600 53 1 0.2345 0.2133 4.4974 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362027387.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:06 Heat of formation + Delta-G solvation = -21.919389 kcal Electronic energy + Delta-G solvation = -30584.833611 eV Core-core repulsion = 26648.180908 eV Total energy + Delta-G solvation = -3936.652703 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.63824 -40.05658 -39.13607 -38.32783 -35.66066 -34.62556 -34.18537 -32.25883 -31.79714 -29.83133 -29.26542 -28.45350 -27.89966 -26.37349 -24.85377 -24.24794 -24.04678 -21.82488 -21.50984 -21.22294 -19.51309 -19.09459 -18.33136 -17.74385 -17.58736 -17.05785 -16.53165 -16.40492 -16.12738 -15.76306 -15.59613 -15.52700 -15.27788 -15.11551 -14.74126 -14.44683 -14.34980 -14.20986 -13.92113 -13.82260 -13.44409 -13.32694 -12.97882 -12.84876 -12.78572 -12.70861 -12.58890 -12.42287 -12.28203 -12.19587 -12.17831 -12.08147 -11.87289 -11.79233 -11.37259 -10.92618 -10.86112 -10.72949 -10.50496 -10.50383 -9.95445 -9.67319 -9.34961 -9.20875 -8.13850 -6.20604 -0.10445 0.29160 1.40308 1.41176 1.51722 2.03778 2.43669 2.69138 2.84063 2.88934 3.19744 3.23701 3.57520 3.84878 3.88246 3.96550 4.12022 4.14654 4.17931 4.21812 4.25543 4.35416 4.39020 4.48287 4.51869 4.57653 4.65507 4.74458 4.76341 4.85114 4.88728 4.91645 4.95285 4.97355 5.07440 5.20365 5.21131 5.24297 5.29924 5.42159 5.47767 5.50928 5.53758 5.57334 5.66133 5.77320 5.81741 5.86907 5.92802 6.03019 6.16713 6.37983 6.43228 6.52532 6.64453 6.93979 7.46329 7.53429 8.98433 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.021688 B = 0.002049 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.748369 B =13663.429360 C =14294.195743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.054 4.054 3 C -0.106 4.106 4 C 0.041 3.959 5 C -0.513 4.513 6 H 0.064 0.936 7 C -0.005 4.005 8 N -0.937 5.937 9 Si 0.957 3.043 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.263 1.263 13 C 0.086 3.914 14 N -0.673 5.673 15 C 0.080 3.920 16 H 0.055 0.945 17 C -0.108 4.108 18 C 0.049 3.951 19 N -0.476 5.476 20 C 0.117 3.883 21 C -0.172 4.172 22 C -0.082 4.082 23 C -0.128 4.128 24 C -0.077 4.077 25 C -0.143 4.143 26 C 0.547 3.453 27 N -0.841 5.841 28 O -0.548 6.548 29 C 0.055 3.945 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.039 0.961 33 H 0.029 0.971 34 H 0.038 0.962 35 H 0.061 0.939 36 H -0.016 1.016 37 H -0.014 1.014 38 H 0.260 0.740 39 H 0.056 0.944 40 H 0.020 0.980 41 H 0.342 0.658 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.063 0.937 46 H 0.130 0.870 47 H 0.151 0.849 48 H 0.162 0.838 49 H 0.161 0.839 50 H 0.408 0.592 51 H 0.412 0.588 52 H 0.059 0.941 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.971 1.780 35.444 35.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.054 4.054 3 C -0.163 4.163 4 C 0.004 3.996 5 C -0.551 4.551 6 H 0.082 0.918 7 C -0.202 4.202 8 N -0.578 5.578 9 Si 0.782 3.218 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.188 1.188 13 C -0.044 4.044 14 N -0.307 5.307 15 C -0.030 4.030 16 H 0.073 0.927 17 C -0.147 4.147 18 C -0.077 4.077 19 N -0.197 5.197 20 C 0.021 3.979 21 C -0.192 4.192 22 C -0.101 4.101 23 C -0.146 4.146 24 C -0.095 4.095 25 C -0.147 4.147 26 C 0.332 3.668 27 N -0.407 5.407 28 O -0.425 6.425 29 C -0.072 4.072 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.002 0.998 37 H 0.004 0.996 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.038 0.962 41 H 0.163 0.837 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.081 0.919 46 H 0.148 0.852 47 H 0.169 0.831 48 H 0.180 0.820 49 H 0.178 0.822 50 H 0.239 0.761 51 H 0.244 0.756 52 H 0.077 0.923 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.129 2.748 34.532 35.019 hybrid contribution -0.511 -1.198 -1.149 1.737 sum -5.640 1.550 33.383 33.892 Atomic orbital electron populations 1.21674 0.94769 1.00440 1.01005 1.20477 0.95726 0.95883 0.93310 1.21484 0.99055 0.95526 1.00244 1.18995 0.94041 0.94013 0.92579 1.21605 1.30208 1.11842 0.91485 0.91776 1.25923 0.95775 0.95936 1.02560 1.70107 1.38859 1.24875 1.24003 0.85567 0.79063 0.78217 0.78937 1.20200 1.21100 1.18763 1.21841 0.99092 0.94081 0.89347 1.60600 1.16436 1.53255 1.00374 1.22368 0.95300 0.95961 0.89408 0.92678 1.22494 0.96250 1.01821 0.94110 1.23280 0.88660 0.99667 0.96096 1.62119 1.03092 1.54397 1.00100 1.19249 0.95627 0.92104 0.90908 1.21859 1.03014 0.95877 0.98413 1.21589 0.94795 1.01106 0.92561 1.21524 0.99265 0.92336 1.01463 1.21633 0.96688 0.98140 0.93087 1.20045 1.05373 0.93172 0.96130 1.18428 0.78075 0.86021 0.84253 1.43658 1.59458 1.14143 1.23478 1.90932 1.48850 1.80380 1.22310 1.23004 0.96389 0.96283 0.91507 0.91848 0.93462 0.94195 0.95171 0.94267 0.91994 0.99774 0.99588 0.93165 0.92587 0.96190 0.83679 0.90463 0.91545 0.90661 0.91855 0.85200 0.83098 0.82011 0.82159 0.76098 0.75569 0.92303 0.91142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.66 7.89 71.98 0.57 -4.09 16 2 C -0.05 -2.25 0.60 -52.18 -0.03 -2.28 16 3 C -0.11 -4.38 8.06 71.98 0.58 -3.80 16 4 C 0.04 2.21 4.04 29.85 0.12 2.33 16 5 C -0.51 -29.24 7.65 25.60 0.20 -29.04 16 6 H 0.06 3.53 5.68 -2.91 -0.02 3.51 16 7 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 8 N -0.94 -58.30 13.29 21.44 0.28 -58.01 16 9 Si 0.96 45.59 29.54 68.60 2.03 47.62 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 11 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 12 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 13 C 0.09 3.10 4.50 86.30 0.39 3.49 16 14 N -0.67 -20.84 5.50 -487.05 -2.68 -23.52 16 15 C 0.08 2.11 3.33 45.79 0.15 2.26 16 16 H 0.06 1.39 7.82 -2.39 -0.02 1.37 16 17 C -0.11 -2.82 6.76 31.80 0.22 -2.60 16 18 C 0.05 1.14 6.38 86.65 0.55 1.69 16 19 N -0.48 -12.14 3.23 -682.06 -2.20 -14.34 16 20 C 0.12 2.47 4.82 38.71 0.19 2.66 16 21 C -0.17 -2.68 7.94 22.38 0.18 -2.51 16 22 C -0.08 -0.82 10.03 22.29 0.22 -0.60 16 23 C -0.13 -0.97 10.02 22.24 0.22 -0.75 16 24 C -0.08 -0.75 9.52 22.52 0.21 -0.54 16 25 C -0.14 -2.66 5.89 -19.98 -0.12 -2.78 16 26 C 0.55 12.08 8.02 86.66 0.70 12.78 16 27 N -0.84 -9.87 8.82 -175.89 -1.55 -11.42 16 28 O -0.55 -18.02 15.88 -4.02 -0.06 -18.08 16 29 C 0.05 1.35 6.23 86.44 0.54 1.89 16 30 H 0.06 2.05 6.57 -2.39 -0.02 2.03 16 31 H 0.05 1.96 6.62 -2.38 -0.02 1.94 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.04 1.70 6.62 -2.39 -0.02 1.69 16 35 H 0.06 2.34 7.60 -2.39 -0.02 2.32 16 36 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 37 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 38 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 39 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.02 0.73 8.07 -2.39 -0.02 0.71 16 41 H 0.34 10.16 6.06 -89.70 -0.54 9.62 16 42 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.07 2.09 8.06 -2.39 -0.02 2.07 16 44 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 45 H 0.06 1.20 6.38 -2.39 -0.02 1.18 16 46 H 0.13 1.88 7.00 -2.91 -0.02 1.86 16 47 H 0.15 0.73 8.06 -2.91 -0.02 0.71 16 48 H 0.16 0.16 8.06 -2.91 -0.02 0.14 16 49 H 0.16 0.35 6.44 -2.91 -0.02 0.33 16 50 H 0.41 4.30 8.93 -92.71 -0.83 3.48 16 51 H 0.41 1.62 6.89 -92.71 -0.64 0.98 16 52 H 0.06 1.25 6.95 -2.38 -0.02 1.24 16 53 H 0.07 1.96 7.47 -2.39 -0.02 1.94 16 Total: -1.00 -77.38 409.31 0.09 -77.29 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: -1.07 Total: 22.20 kcal Atomic # 6 Polarization: -27.08 SS G_CDS: 5.35 Total: -21.73 kcal Atomic # 7 Polarization: -101.15 SS G_CDS: -6.15 Total: -107.30 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.06 Total: -18.08 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -77.38 0.09 -77.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362027387.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.374 kcal (2) G-P(sol) polarization free energy of solvation -77.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds