Wall clock time and date at job start Wed Apr 1 2020 03:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50699 * 109.46866 * 299.99792 * 4 2 1 6 6 H 1.08003 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99861 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00522 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99980 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46950 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47438 * 119.99718 * 9 7 5 12 12 H 1.48505 * 109.46997 * 239.99833 * 9 7 5 13 13 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 14 14 N 1.46506 * 109.47075 * 59.99940 * 13 2 1 15 15 C 1.34777 * 120.00264 * 179.97438 * 14 13 2 16 16 O 1.21284 * 119.99754 * 0.02562 * 15 14 13 17 17 C 1.50696 * 119.99757 * 180.02562 * 15 14 13 18 18 H 1.09002 * 110.37060 * 60.90128 * 17 15 14 19 19 C 1.54379 * 110.41235 * 298.54892 * 17 15 14 20 20 C 1.54271 * 105.05879 * 217.36966 * 19 17 15 21 21 C 1.54375 * 105.05932 * 0.02562 * 20 19 17 22 22 N 1.48555 * 104.59953 * 23.84787 * 21 20 19 23 23 C 1.46902 * 111.00377 * 200.96240 * 22 21 20 24 24 C 1.50696 * 109.47004 * 285.42171 * 23 22 21 25 25 C 1.38226 * 119.62266 * 94.99710 * 24 23 22 26 26 C 1.38628 * 119.16623 * 179.97438 * 25 24 23 27 27 C 1.38667 * 118.41934 * 0.02562 * 26 25 24 28 28 C 1.38182 * 119.16311 * 0.02562 * 27 26 25 29 29 N 1.31861 * 119.61940 * 274.72703 * 24 23 22 30 30 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 34 34 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 36 36 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 37 37 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 38 38 H 0.96992 * 120.00310 * 180.02562 * 8 7 5 39 39 H 1.09000 * 109.47486 * 180.02562 * 13 2 1 40 40 H 1.09001 * 109.47362 * 300.00732 * 13 2 1 41 41 H 0.96999 * 119.99689 * 0.02562 * 14 13 2 42 42 H 1.08996 * 110.32863 * 336.26319 * 19 17 15 43 43 H 1.08994 * 110.32338 * 98.47819 * 19 17 15 44 44 H 1.09002 * 110.32019 * 118.89905 * 20 19 17 45 45 H 1.09004 * 110.32217 * 240.99917 * 20 19 17 46 46 H 1.08996 * 110.41025 * 142.63485 * 21 20 19 47 47 H 1.09007 * 110.40937 * 264.95288 * 21 20 19 48 48 H 1.09004 * 109.46902 * 45.42049 * 23 22 21 49 49 H 1.09004 * 109.47060 * 165.41853 * 23 22 21 50 50 H 1.08008 * 120.41649 * 359.95959 * 25 24 23 51 51 H 1.07996 * 120.78908 * 180.02562 * 26 25 24 52 52 H 1.08002 * 120.42019 * 179.97438 * 27 26 25 53 53 H 1.08007 * 119.61940 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.5377 -0.0110 2.4797 6 1 0.9171 0.8674 2.3806 7 6 1.8712 -0.4817 3.7319 8 7 2.6272 -1.5510 3.8527 9 14 1.2479 0.3984 5.2572 10 1 0.4226 1.5649 4.8530 11 1 0.4236 -0.5355 6.0656 12 1 2.4027 0.8659 6.0655 13 6 2.0400 -0.7213 -1.2492 14 7 1.5517 -0.0307 -2.4454 15 6 1.8777 -0.4908 -3.6696 16 8 2.5750 -1.4769 -3.7808 17 6 1.3758 0.2200 -4.8999 18 1 1.7441 1.2456 -4.9224 19 6 -0.1673 0.2010 -4.9409 20 6 -0.5266 0.0185 -6.4300 21 6 0.8297 -0.0581 -7.1633 22 7 1.7916 -0.5102 -6.1254 23 6 3.1701 -0.1675 -6.4999 24 6 3.6408 -1.0974 -7.5883 25 6 3.5332 -0.7109 -8.9111 26 6 3.9696 -1.5735 -9.9047 27 6 4.5000 -2.7984 -9.5290 28 6 4.5748 -3.1165 -8.1864 29 7 4.1556 -2.2682 -7.2677 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6768 1.9562 0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 -1.7489 1.2492 37 1 3.1300 -0.7217 1.2490 38 1 2.8615 -1.8824 4.7336 39 1 3.1300 -0.7217 -1.2490 40 1 1.6766 -1.7489 -1.2493 41 1 0.9943 0.7582 -2.3564 42 1 -0.5515 -0.6331 -4.3538 43 1 -0.5675 1.1437 -4.5677 44 1 -1.0870 -0.9053 -6.5737 45 1 -1.1047 0.8708 -6.7872 46 1 0.7813 -0.7811 -7.9776 47 1 1.1120 0.9235 -7.5440 48 1 3.2036 0.8606 -6.8607 49 1 3.8188 -0.2686 -5.6298 50 1 3.1140 0.2510 -9.1674 51 1 3.8983 -1.2980 -10.9465 52 1 4.8495 -3.4954 -10.2764 53 1 4.9870 -4.0684 -7.8855 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368138072.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:15 Heat of formation + Delta-G solvation = -28.839306 kcal Electronic energy + Delta-G solvation = -30438.603813 eV Core-core repulsion = 26501.651040 eV Total energy + Delta-G solvation = -3936.952773 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.49270 -40.86653 -39.35927 -38.23486 -35.25644 -34.44926 -33.81295 -33.26653 -31.40318 -30.59527 -29.01983 -27.94476 -27.46623 -27.01723 -25.02838 -24.40595 -23.40504 -22.75694 -21.62565 -21.05319 -19.81421 -18.39304 -18.24393 -17.73986 -17.27000 -17.08746 -16.85692 -16.46972 -16.29932 -16.06732 -15.76334 -15.17359 -15.01293 -14.72153 -14.65368 -14.57203 -14.44581 -14.19254 -13.95202 -13.92755 -13.76466 -13.55656 -13.14706 -12.91233 -12.74750 -12.68662 -12.55235 -12.42142 -12.33595 -12.27152 -12.21841 -12.08453 -11.93972 -11.53219 -11.51344 -11.09083 -10.87186 -10.77663 -10.63737 -10.52600 -10.23871 -10.00069 -9.95400 -9.40926 -8.13804 -6.22054 0.17540 0.43923 1.42099 1.42624 1.54900 1.74402 2.13642 2.44758 2.76602 3.20457 3.22724 3.36524 3.60855 3.66683 3.84589 3.97333 4.02209 4.05937 4.09519 4.14147 4.19960 4.24134 4.28088 4.29523 4.41851 4.52025 4.58397 4.70489 4.72455 4.73674 4.79254 4.81979 4.90947 4.91645 4.98172 5.04508 5.12275 5.13785 5.15259 5.20448 5.28425 5.29889 5.42321 5.49893 5.50767 5.55036 5.59824 5.75675 5.81256 5.85625 5.90255 6.00078 6.30296 6.69995 6.93749 7.20725 7.40450 7.45860 8.99048 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.019849 B = 0.002060 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.345552 B =13587.126937 C =14540.366116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.063 4.063 3 C -0.121 4.121 4 C 0.039 3.961 5 C -0.511 4.511 6 H 0.075 0.925 7 C -0.009 4.009 8 N -0.940 5.940 9 Si 0.961 3.039 10 H -0.254 1.254 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.146 3.854 14 N -0.709 5.709 15 C 0.508 3.492 16 O -0.570 6.570 17 C 0.050 3.950 18 H 0.106 0.894 19 C -0.112 4.112 20 C -0.116 4.116 21 C 0.033 3.967 22 N -0.507 5.507 23 C 0.099 3.901 24 C 0.120 3.880 25 C -0.165 4.165 26 C -0.076 4.076 27 C -0.172 4.172 28 C 0.075 3.925 29 N -0.511 5.511 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.034 0.966 33 H 0.057 0.943 34 H 0.034 0.966 35 H 0.073 0.927 36 H -0.017 1.017 37 H -0.017 1.017 38 H 0.259 0.741 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.413 0.587 42 H 0.058 0.942 43 H 0.112 0.888 44 H 0.064 0.936 45 H 0.103 0.897 46 H 0.075 0.925 47 H 0.073 0.927 48 H 0.082 0.918 49 H 0.058 0.942 50 H 0.159 0.841 51 H 0.169 0.831 52 H 0.162 0.838 53 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.069 9.276 -32.041 33.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.064 4.064 3 C -0.178 4.178 4 C 0.001 3.999 5 C -0.549 4.549 6 H 0.093 0.907 7 C -0.206 4.206 8 N -0.582 5.582 9 Si 0.787 3.213 10 H -0.178 1.178 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.022 3.978 14 N -0.363 5.363 15 C 0.295 3.705 16 O -0.447 6.447 17 C -0.061 4.061 18 H 0.123 0.877 19 C -0.150 4.150 20 C -0.154 4.154 21 C -0.093 4.093 22 N -0.232 5.232 23 C -0.029 4.029 24 C -0.018 4.018 25 C -0.185 4.185 26 C -0.102 4.102 27 C -0.192 4.192 28 C -0.082 4.082 29 N -0.221 5.221 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.091 0.909 36 H 0.001 0.999 37 H 0.001 0.999 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.251 0.749 42 H 0.077 0.923 43 H 0.131 0.869 44 H 0.083 0.917 45 H 0.122 0.878 46 H 0.093 0.907 47 H 0.091 0.909 48 H 0.100 0.900 49 H 0.077 0.923 50 H 0.176 0.824 51 H 0.186 0.814 52 H 0.180 0.820 53 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.436 7.666 -31.039 32.278 hybrid contribution 0.328 0.560 0.735 0.980 sum -4.108 8.226 -30.305 31.669 Atomic orbital electron populations 1.21687 0.93380 1.00871 1.01830 1.20693 0.96847 0.96319 0.92500 1.21689 0.99782 0.94505 1.01825 1.18984 0.94122 0.94142 0.92632 1.21626 1.30270 1.12038 0.90930 0.90650 1.26012 0.95728 0.95930 1.02925 1.70142 1.38906 1.25093 1.24012 0.85445 0.78012 0.78822 0.79043 1.17755 1.21130 1.21132 1.21111 0.97324 0.95142 0.84270 1.45920 1.53633 1.32220 1.04523 1.21090 0.79753 0.84503 0.85186 1.90743 1.39001 1.27883 1.87098 1.22649 0.98311 0.96674 0.88475 0.87667 1.22337 0.90145 1.04057 0.98495 1.22288 0.96378 1.03431 0.93319 1.23257 0.91770 1.00026 0.94293 1.64918 1.01584 1.54092 1.02591 1.21052 0.90359 0.95493 0.96043 1.21154 0.94931 0.91892 0.93866 1.22223 1.01520 1.02421 0.92308 1.21999 0.94064 0.92823 1.01267 1.22478 1.00701 0.98805 0.97222 1.23118 0.96203 0.98704 0.90164 1.67482 1.10134 1.04134 1.40357 0.90818 0.92428 0.94726 0.92417 0.94681 0.90857 0.99909 0.99889 0.93224 0.94309 0.94401 0.74943 0.92318 0.86949 0.91739 0.87836 0.90668 0.90903 0.90049 0.92310 0.82379 0.81367 0.82016 0.82388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.05 8.05 71.98 0.58 -3.47 16 2 C -0.06 -2.43 0.54 -52.18 -0.03 -2.46 16 3 C -0.12 -4.05 8.05 71.98 0.58 -3.47 16 4 C 0.04 2.03 4.04 29.85 0.12 2.15 16 5 C -0.51 -27.67 7.65 25.60 0.20 -27.47 16 6 H 0.08 3.79 5.68 -2.91 -0.02 3.77 16 7 C -0.01 -0.54 5.46 84.65 0.46 -0.07 16 8 N -0.94 -58.27 13.29 21.45 0.28 -57.99 16 9 Si 0.96 44.00 29.54 68.60 2.03 46.03 16 10 H -0.25 -10.73 7.11 99.48 0.71 -10.03 16 11 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 12 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 13 C 0.15 5.51 4.56 86.38 0.39 5.90 16 14 N -0.71 -20.13 4.90 -463.05 -2.27 -22.39 16 15 C 0.51 15.70 6.84 87.66 0.60 16.30 16 16 O -0.57 -24.26 15.76 -3.04 -0.05 -24.31 16 17 C 0.05 1.04 2.67 44.31 0.12 1.15 16 18 H 0.11 1.56 8.00 -2.39 -0.02 1.54 16 19 C -0.11 -1.66 6.47 31.49 0.20 -1.46 16 20 C -0.12 -1.39 7.00 31.49 0.22 -1.17 16 21 C 0.03 0.48 5.83 86.45 0.50 0.98 16 22 N -0.51 -11.59 4.61 -865.50 -3.99 -15.58 16 23 C 0.10 2.27 4.94 85.56 0.42 2.69 16 24 C 0.12 2.83 6.03 42.55 0.26 3.09 16 25 C -0.16 -2.50 9.39 22.36 0.21 -2.29 16 26 C -0.08 -0.93 10.18 22.47 0.23 -0.70 16 27 C -0.17 -2.52 10.11 22.36 0.23 -2.29 16 28 C 0.07 1.66 11.18 84.67 0.95 2.61 16 29 N -0.51 -15.07 10.27 -183.88 -1.89 -16.96 16 30 H 0.07 1.81 6.86 -2.39 -0.02 1.80 16 31 H 0.06 2.05 6.62 -2.39 -0.02 2.04 16 32 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.06 2.06 6.62 -2.39 -0.02 2.04 16 34 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.07 1.80 6.86 -2.39 -0.02 1.78 16 36 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 37 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 38 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 39 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.41 8.67 6.14 -92.71 -0.57 8.10 16 42 H 0.06 1.14 7.85 -2.39 -0.02 1.12 16 43 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.07 0.65 7.76 -2.38 -0.02 0.63 16 48 H 0.08 1.25 7.67 -2.39 -0.02 1.23 16 49 H 0.06 1.80 7.29 -2.38 -0.02 1.78 16 50 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 51 H 0.17 0.79 8.06 -2.91 -0.02 0.77 16 52 H 0.16 1.29 8.06 -2.91 -0.02 1.26 16 53 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -82.66 417.99 0.68 -81.98 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.32 Total: 19.20 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: 6.24 Total: -9.98 kcal Atomic # 7 Polarization: -105.06 SS G_CDS: -7.86 Total: -112.92 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.05 Total: -24.31 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -82.66 0.68 -81.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368138072.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.142 kcal (2) G-P(sol) polarization free energy of solvation -82.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds