Wall clock time and date at job start Wed Apr 1 2020 03:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47236 * 2 1 4 4 C 1.52998 * 109.47157 * 239.99766 * 2 1 3 5 5 C 1.50698 * 109.47245 * 60.00042 * 4 2 1 6 6 H 1.08001 * 120.00090 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00007 * 179.97438 * 5 4 2 8 8 N 1.31522 * 120.00198 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00191 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47070 * 90.00185 * 9 7 5 11 11 H 1.48504 * 109.47306 * 210.00358 * 9 7 5 12 12 H 1.48497 * 109.46876 * 330.00328 * 9 7 5 13 13 C 1.52999 * 109.46443 * 119.99935 * 2 1 3 14 14 N 1.46500 * 109.47528 * 299.99804 * 13 2 1 15 15 C 1.34773 * 120.00431 * 180.02562 * 14 13 2 16 16 O 1.21593 * 119.99894 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00097 * 179.72742 * 15 14 13 18 18 C 1.46504 * 119.99854 * 180.27545 * 17 15 14 19 19 H 1.08996 * 110.29026 * 34.29297 * 18 17 15 20 20 C 1.54379 * 110.31973 * 272.16880 * 18 17 15 21 21 N 1.48559 * 104.59444 * 264.95659 * 20 18 17 22 22 C 1.48562 * 104.22245 * 320.52071 * 21 20 18 23 23 C 1.54260 * 110.32256 * 156.42458 * 18 17 15 24 24 H 1.09003 * 110.32209 * 359.97438 * 23 18 17 25 25 C 1.50703 * 110.32072 * 237.78969 * 23 18 17 26 26 C 1.38234 * 119.99883 * 299.72446 * 25 23 18 27 27 C 1.38242 * 119.99652 * 179.79164 * 26 25 23 28 28 C 1.38233 * 119.99864 * 0.46281 * 27 26 25 29 29 C 1.38230 * 120.00297 * 359.76907 * 28 27 26 30 30 C 1.38232 * 119.99776 * 120.00085 * 25 23 18 31 31 H 1.08995 * 109.47475 * 300.00548 * 1 2 3 32 32 H 1.09008 * 109.46867 * 60.00459 * 1 2 3 33 33 H 1.09001 * 109.47371 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.47107 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.46983 * 299.99881 * 3 2 1 36 36 H 1.09003 * 109.47199 * 59.99613 * 3 2 1 37 37 H 1.09000 * 109.46924 * 180.02562 * 4 2 1 38 38 H 1.09007 * 109.47220 * 299.99907 * 4 2 1 39 39 H 0.96995 * 120.00094 * 179.97438 * 8 7 5 40 40 H 1.09009 * 109.47054 * 180.02562 * 13 2 1 41 41 H 1.08998 * 109.47782 * 60.00560 * 13 2 1 42 42 H 0.97000 * 119.99456 * 0.02562 * 14 13 2 43 43 H 0.97000 * 119.99736 * 0.26819 * 17 15 14 44 44 H 1.08998 * 110.41358 * 23.73756 * 20 18 17 45 45 H 1.09000 * 110.41097 * 146.06282 * 20 18 17 46 46 H 1.00903 * 111.00551 * 200.96331 * 21 20 18 47 47 H 1.09006 * 110.41419 * 158.26076 * 22 21 20 48 48 H 1.09002 * 110.41213 * 280.58135 * 22 21 20 49 49 H 1.07995 * 120.00184 * 359.97438 * 26 25 23 50 50 H 1.07999 * 119.99619 * 180.25919 * 27 26 25 51 51 H 1.07996 * 119.99805 * 179.78948 * 28 27 26 52 52 H 1.08002 * 120.00345 * 179.97438 * 29 28 27 53 53 H 1.08003 * 120.00336 * 359.97438 * 30 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 1 0.9171 0.8674 -2.3807 7 6 1.8712 -0.4818 -3.7319 8 7 2.6274 -1.5511 -3.8525 9 14 1.2492 0.3991 -5.2572 10 1 2.2276 1.4408 -5.6608 11 1 1.0845 -0.5798 -6.3617 12 1 -0.0589 1.0367 -4.9617 13 6 2.0398 -0.7213 1.2493 14 7 1.5515 -0.0307 2.4455 15 6 1.8774 -0.4908 3.6696 16 8 2.5763 -1.4795 3.7812 17 7 1.4326 0.1478 4.7700 18 6 1.7919 -0.3489 6.1006 19 1 2.7963 -0.7720 6.0876 20 6 0.7707 -1.4065 6.5718 21 7 -0.2051 -0.6448 7.3932 22 6 0.6313 0.3212 8.1510 23 6 1.7028 0.7883 7.1390 24 1 1.3922 1.7162 6.6586 25 6 3.0305 0.9734 7.8276 26 6 3.5879 -0.0680 8.5456 27 6 4.8078 0.1005 9.1736 28 6 5.4657 1.3134 9.0915 29 6 4.9060 2.3564 8.3776 30 6 3.6882 2.1865 7.7459 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 3.1300 -0.7217 -1.2489 38 1 1.6767 -1.7490 -1.2492 39 1 2.8617 -1.8825 -4.7335 40 1 3.1299 -0.7209 1.2496 41 1 1.6766 -1.7489 1.2493 42 1 0.9936 0.7578 2.3564 43 1 0.8748 0.9363 4.6809 44 1 0.2731 -1.8623 5.7158 45 1 1.2639 -2.1692 7.1743 46 1 -0.7071 -1.2570 8.0187 47 1 0.0288 1.1663 8.4842 48 1 1.1007 -0.1695 9.0037 49 1 3.0717 -1.0142 8.6135 50 1 5.2453 -0.7145 9.7311 51 1 6.4171 1.4461 9.5850 52 1 5.4198 3.3042 8.3138 53 1 3.2507 3.0015 7.1883 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000418209134.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:33 Heat of formation + Delta-G solvation = -37.102602 kcal Electronic energy + Delta-G solvation = -30202.205877 eV Core-core repulsion = 26264.894781 eV Total energy + Delta-G solvation = -3937.311097 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.54340 -40.54154 -39.06545 -38.38252 -35.22894 -34.90992 -33.78904 -33.26224 -31.78900 -29.55203 -28.94798 -28.86485 -27.93849 -27.25416 -24.86829 -23.92615 -23.25642 -22.81639 -21.56970 -21.11575 -20.10726 -19.06141 -18.35597 -18.02235 -17.65562 -17.04175 -16.60104 -16.46800 -16.25573 -15.81302 -15.61686 -15.45093 -15.21381 -15.00335 -14.65286 -14.34583 -14.22788 -14.07554 -13.94834 -13.91997 -13.80065 -13.65289 -13.27164 -12.86045 -12.80984 -12.70851 -12.61599 -12.55582 -12.31692 -12.24934 -12.20851 -11.95720 -11.85752 -11.77745 -11.51567 -11.36579 -10.96141 -10.83882 -10.49877 -10.39387 -9.87118 -9.80890 -9.56341 -9.52298 -8.12430 -6.20200 0.40975 0.50099 1.43479 1.44070 1.54396 1.72205 2.17637 2.45528 2.82910 3.20816 3.21897 3.33363 3.58510 3.74794 3.84197 4.00178 4.04567 4.11673 4.12054 4.19970 4.25140 4.27293 4.34264 4.40701 4.60317 4.62723 4.71089 4.73160 4.75938 4.80432 4.83369 4.95091 4.98215 4.99340 5.10756 5.13389 5.14606 5.16731 5.42428 5.47606 5.51412 5.52105 5.55088 5.56025 5.61272 5.63349 5.66418 5.72730 5.82592 5.91622 6.04538 6.11324 6.32589 6.34273 6.94813 7.14440 7.47366 7.62344 9.00139 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.018025 B = 0.001986 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.047696 B =14097.106959 C =14733.235363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.063 4.063 3 C -0.120 4.120 4 C 0.039 3.961 5 C -0.511 4.511 6 H 0.073 0.927 7 C -0.007 4.007 8 N -0.939 5.939 9 Si 0.959 3.041 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.259 1.259 13 C 0.163 3.837 14 N -0.723 5.723 15 C 0.699 3.301 16 O -0.640 6.640 17 N -0.719 5.719 18 C 0.170 3.830 19 H 0.071 0.929 20 C 0.028 3.972 21 N -0.663 5.663 22 C 0.048 3.952 23 C -0.049 4.049 24 H 0.107 0.893 25 C -0.085 4.085 26 C -0.126 4.126 27 C -0.129 4.129 28 C -0.131 4.131 29 C -0.128 4.128 30 C -0.122 4.122 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.035 0.965 34 H 0.035 0.965 35 H 0.056 0.944 36 H 0.070 0.930 37 H -0.015 1.015 38 H -0.014 1.014 39 H 0.259 0.741 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.409 0.591 43 H 0.411 0.589 44 H 0.066 0.934 45 H 0.053 0.947 46 H 0.349 0.651 47 H 0.099 0.901 48 H 0.054 0.946 49 H 0.122 0.878 50 H 0.135 0.865 51 H 0.138 0.862 52 H 0.139 0.861 53 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.075 9.787 30.944 32.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.063 4.063 3 C -0.178 4.178 4 C 0.002 3.998 5 C -0.549 4.549 6 H 0.091 0.909 7 C -0.204 4.204 8 N -0.580 5.580 9 Si 0.785 3.215 10 H -0.202 1.202 11 H -0.217 1.217 12 H -0.183 1.183 13 C 0.038 3.962 14 N -0.379 5.379 15 C 0.399 3.601 16 O -0.522 6.522 17 N -0.375 5.375 18 C 0.064 3.936 19 H 0.089 0.911 20 C -0.103 4.103 21 N -0.293 5.293 22 C -0.082 4.082 23 C -0.069 4.069 24 H 0.125 0.875 25 C -0.085 4.085 26 C -0.144 4.144 27 C -0.147 4.147 28 C -0.149 4.149 29 C -0.145 4.145 30 C -0.140 4.140 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.004 0.996 38 H 0.004 0.996 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.247 0.753 43 H 0.248 0.752 44 H 0.085 0.915 45 H 0.072 0.928 46 H 0.166 0.834 47 H 0.118 0.882 48 H 0.072 0.928 49 H 0.140 0.860 50 H 0.153 0.847 51 H 0.156 0.844 52 H 0.156 0.844 53 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.653 9.255 30.390 31.878 hybrid contribution 0.260 -0.376 -0.759 0.886 sum -2.393 8.878 29.630 31.024 Atomic orbital electron populations 1.21684 0.93568 1.00914 1.01607 1.20694 0.96693 0.96306 0.92624 1.21681 0.99831 0.94604 1.01638 1.18979 0.94271 0.94227 0.92372 1.21585 1.30342 1.12017 0.90999 0.90850 1.25972 0.95742 0.95897 1.02783 1.70130 1.38858 1.24989 1.24051 0.85525 0.79189 0.78074 0.78724 1.20164 1.21658 1.18283 1.21030 0.97312 0.94902 0.82960 1.44997 1.56140 1.33370 1.03438 1.16159 0.79994 0.82639 0.81336 1.90890 1.44941 1.29732 1.86655 1.44946 1.56077 1.32964 1.03466 1.21539 0.97660 0.93828 0.80584 0.91050 1.23275 0.93598 0.95389 0.98054 1.63702 1.23126 1.18008 1.24500 1.23099 0.93511 0.97228 0.94314 1.21151 0.92248 0.99037 0.94439 0.87531 1.19764 0.96080 0.94430 0.98267 1.21150 0.96460 0.98773 0.98048 1.21410 0.95196 0.98245 0.99824 1.21474 1.00667 0.93379 0.99410 1.21458 0.95785 0.99947 0.97356 1.21322 0.95703 0.97213 0.99781 0.91191 0.92546 0.94543 0.94557 0.92504 0.91169 0.99624 0.99609 0.93217 0.94082 0.94040 0.75297 0.75211 0.91532 0.92843 0.83432 0.88226 0.92784 0.85975 0.84674 0.84428 0.84351 0.84678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.08 8.05 71.98 0.58 -3.50 16 2 C -0.06 -2.39 0.54 -52.18 -0.03 -2.42 16 3 C -0.12 -4.05 8.05 71.98 0.58 -3.47 16 4 C 0.04 2.01 4.04 29.85 0.12 2.13 16 5 C -0.51 -27.51 7.65 25.60 0.20 -27.31 16 6 H 0.07 3.68 5.68 -2.91 -0.02 3.66 16 7 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 8 N -0.94 -57.57 13.29 21.45 0.28 -57.28 16 9 Si 0.96 43.78 29.54 68.60 2.03 45.80 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 12 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 13 C 0.16 6.01 4.56 86.38 0.39 6.41 16 14 N -0.72 -20.59 4.96 -478.53 -2.37 -22.97 16 15 C 0.70 21.35 8.56 179.06 1.53 22.88 16 16 O -0.64 -25.89 16.02 -4.01 -0.06 -25.95 16 17 N -0.72 -15.29 5.08 -453.53 -2.30 -17.60 16 18 C 0.17 3.40 2.82 45.89 0.13 3.53 16 19 H 0.07 1.86 6.83 -2.39 -0.02 1.84 16 20 C 0.03 0.52 7.18 86.45 0.62 1.14 16 21 N -0.66 -9.11 7.63 -500.42 -3.82 -12.93 16 22 C 0.05 0.53 6.91 86.53 0.60 1.13 16 23 C -0.05 -0.68 3.05 -10.56 -0.03 -0.71 16 24 H 0.11 1.23 7.44 -2.39 -0.02 1.21 16 25 C -0.08 -1.32 4.74 -19.87 -0.09 -1.41 16 26 C -0.13 -2.00 8.19 22.27 0.18 -1.81 16 27 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 28 C -0.13 -1.83 10.05 22.27 0.22 -1.61 16 29 C -0.13 -1.79 10.05 22.27 0.22 -1.56 16 30 C -0.12 -1.80 9.68 22.27 0.22 -1.59 16 31 H 0.07 1.79 6.86 -2.39 -0.02 1.77 16 32 H 0.06 2.03 6.62 -2.38 -0.02 2.02 16 33 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.06 2.03 6.62 -2.39 -0.02 2.02 16 36 H 0.07 1.77 6.86 -2.39 -0.02 1.75 16 37 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 38 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 39 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 40 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 41 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.41 8.93 6.18 -92.71 -0.57 8.36 16 43 H 0.41 6.26 8.34 -92.71 -0.77 5.49 16 44 H 0.07 1.57 8.05 -2.39 -0.02 1.55 16 45 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.35 3.70 8.92 -89.69 -0.80 2.90 16 47 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 48 H 0.05 0.56 6.78 -2.39 -0.02 0.55 16 49 H 0.12 1.74 7.63 -2.91 -0.02 1.72 16 50 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 51 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 52 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 53 H 0.14 1.53 7.97 -2.91 -0.02 1.51 16 Total: -1.00 -73.11 415.87 -1.34 -74.44 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: -1.22 Total: 26.27 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: 6.13 Total: -9.79 kcal Atomic # 7 Polarization: -102.56 SS G_CDS: -8.21 Total: -110.77 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.06 Total: -25.95 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -73.11 -1.34 -74.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418209134.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.340 kcal (2) G-P(sol) polarization free energy of solvation -73.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds