Wall clock time and date at job start Wed Apr 1 2020 03:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53002 * 109.46576 * 2 1 4 4 C 1.53002 * 109.46904 * 119.99899 * 2 1 3 5 5 H 1.09001 * 109.46887 * 304.46250 * 4 2 1 6 6 C 1.50692 * 109.47102 * 64.46619 * 4 2 1 7 7 O 1.21281 * 120.00232 * 28.46027 * 6 4 2 8 8 N 1.34775 * 119.99863 * 208.45627 * 6 4 2 9 9 C 1.46498 * 119.99902 * 184.25089 * 8 6 4 10 10 C 1.53003 * 109.47336 * 180.02562 * 9 8 6 11 11 H 1.09001 * 109.49655 * 54.99625 * 10 9 8 12 12 C 1.53038 * 109.50118 * 175.06641 * 10 9 8 13 13 C 1.53038 * 109.54028 * 181.28409 * 12 10 9 14 14 C 1.53196 * 109.34056 * 298.68083 * 13 12 10 15 15 N 1.46932 * 108.77166 * 54.61646 * 14 13 12 16 16 C 1.36941 * 120.62729 * 126.41754 * 15 14 13 17 17 H 1.08005 * 119.99740 * 321.02794 * 16 15 14 18 18 C 1.38807 * 120.00064 * 141.02700 * 16 15 14 19 19 N 1.31614 * 119.99994 * 353.35084 * 18 16 15 20 20 Si 1.86799 * 120.00060 * 173.34272 * 18 16 15 21 21 H 1.48500 * 109.47285 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47150 * 120.00348 * 20 18 16 23 23 H 1.48494 * 109.47233 * 240.00479 * 20 18 16 24 24 C 1.46920 * 118.74152 * 306.39358 * 15 14 13 25 25 C 1.50706 * 109.46892 * 184.46612 * 4 2 1 26 26 C 1.38667 * 120.41839 * 120.25122 * 25 4 2 27 27 C 1.38631 * 118.41917 * 180.30172 * 26 25 4 28 28 C 1.38225 * 119.15998 * 359.45219 * 27 26 25 29 29 N 1.31863 * 120.76328 * 0.29051 * 28 27 26 30 30 C 1.31880 * 121.72236 * 359.97438 * 29 28 27 31 31 H 1.09000 * 109.47027 * 304.24855 * 1 2 3 32 32 H 1.08994 * 109.47045 * 64.24768 * 1 2 3 33 33 H 1.08998 * 109.46705 * 184.24970 * 1 2 3 34 34 H 1.08999 * 109.47183 * 240.00133 * 2 1 3 35 35 H 1.08998 * 109.46769 * 180.02562 * 3 2 1 36 36 H 1.08994 * 109.47126 * 299.99810 * 3 2 1 37 37 H 1.08999 * 109.47256 * 60.00177 * 3 2 1 38 38 H 0.96997 * 120.00607 * 4.24862 * 8 6 4 39 39 H 1.08998 * 109.47664 * 299.99477 * 9 8 6 40 40 H 1.09000 * 109.47560 * 60.00365 * 9 8 6 41 41 H 1.09006 * 109.45457 * 301.33004 * 12 10 9 42 42 H 1.08990 * 109.46131 * 61.29506 * 12 10 9 43 43 H 1.09003 * 109.49894 * 178.71020 * 13 12 10 44 44 H 1.09006 * 109.47009 * 58.63026 * 13 12 10 45 45 H 1.08999 * 109.58314 * 294.83718 * 14 13 12 46 46 H 1.08995 * 109.70219 * 174.47487 * 14 13 12 47 47 H 0.97006 * 119.99944 * 179.97438 * 19 18 16 48 48 H 1.09001 * 109.58466 * 293.82059 * 24 15 14 49 49 H 1.08999 * 109.70222 * 173.46914 * 24 15 14 50 50 H 1.08008 * 120.79226 * 0.03364 * 26 25 4 51 51 H 1.07998 * 120.42148 * 179.71508 * 27 26 25 52 52 H 1.08001 * 119.61901 * 180.27072 * 28 27 26 53 53 H 1.08004 * 119.61404 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6129 -0.2556 2.1374 6 6 1.6301 -2.1703 1.1952 7 8 1.4757 -2.7173 0.1238 8 7 1.4351 -2.8585 2.3375 9 6 1.1278 -4.2900 2.2868 10 6 0.9539 -4.8251 3.7097 11 1 0.1980 -4.2366 4.2297 12 6 0.5127 -6.2894 3.6545 13 6 0.3075 -6.8162 5.0766 14 6 1.6319 -6.7382 5.8426 15 7 2.1359 -5.3596 5.7764 16 6 2.4603 -4.6797 6.9201 17 1 1.8494 -4.7878 7.8042 18 6 3.5743 -3.8519 6.9431 19 7 4.3919 -3.8201 5.9122 20 14 3.9127 -2.7828 8.4370 21 1 2.8519 -3.0015 9.4529 22 1 5.2325 -3.1431 9.0148 23 1 3.9233 -1.3544 8.0313 24 6 2.2857 -4.7245 4.4601 25 6 3.5430 -0.6261 1.3058 26 6 4.1680 -0.0180 2.3840 27 6 5.5525 0.0523 2.3905 28 6 6.2594 -0.4925 1.3350 29 7 5.6316 -1.0682 0.3284 30 6 4.3159 -1.1485 0.2865 31 1 -0.3633 0.5784 0.8495 32 1 -0.3633 0.4465 -0.9255 33 1 -0.3633 -1.0248 0.0762 34 1 1.8934 -0.5138 -0.8900 35 1 3.1299 1.4426 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6766 1.9564 0.8900 38 1 1.4982 -2.4061 3.1932 39 1 0.2060 -4.4442 1.7260 40 1 1.9445 -4.8199 1.7964 41 1 -0.4226 -6.3661 3.0999 42 1 1.2800 -6.8813 3.1557 43 1 -0.0288 -7.8522 5.0359 44 1 -0.4425 -6.2094 5.5841 45 1 2.3567 -7.4142 5.3889 46 1 1.4716 -7.0191 6.8834 47 1 5.1702 -3.2413 5.9281 48 1 3.0638 -5.2364 3.8938 49 1 2.5556 -3.6760 4.5865 50 1 3.5897 0.3950 3.1974 51 1 6.0723 0.5229 3.2118 52 1 7.3384 -0.4458 1.3345 53 1 3.8370 -1.6280 -0.5545 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000437582313.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:17 Heat of formation + Delta-G solvation = -26.918525 kcal Electronic energy + Delta-G solvation = -31808.862720 eV Core-core repulsion = 27871.993238 eV Total energy + Delta-G solvation = -3936.869482 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.83857 -40.50469 -39.36858 -37.15676 -36.05943 -34.80038 -33.56268 -32.67795 -32.31281 -31.58571 -28.92677 -27.91505 -27.24025 -26.49691 -24.64504 -23.91898 -23.55952 -22.55512 -21.87772 -20.88571 -20.36854 -18.72829 -18.29942 -18.13912 -17.16951 -17.00616 -16.86498 -16.66304 -16.00638 -15.75753 -15.49811 -15.30849 -15.16963 -14.96338 -14.59368 -14.49881 -14.42310 -14.04627 -14.01066 -13.78599 -13.71972 -13.52574 -13.34499 -13.02435 -12.89945 -12.83539 -12.82870 -12.62315 -12.28152 -12.09254 -11.97210 -11.86894 -11.81051 -11.62361 -11.55332 -11.32399 -11.09071 -11.01919 -10.64104 -10.57313 -10.44284 -10.04641 -9.88857 -8.49584 -7.85369 -5.45869 0.08872 0.31592 1.45169 1.49246 1.58483 1.59990 2.22305 2.50241 2.82208 3.29123 3.43326 3.59798 3.66427 3.66984 3.77750 3.97315 4.00347 4.03536 4.06729 4.09044 4.15168 4.20056 4.34786 4.39371 4.48848 4.54338 4.62291 4.63737 4.70342 4.79867 4.80359 4.82456 4.87608 4.88155 4.99677 5.00949 5.02981 5.15263 5.15720 5.22061 5.23919 5.24488 5.34908 5.37429 5.40176 5.44133 5.51028 5.53497 5.67993 5.73581 5.76063 6.46434 6.52629 6.98120 7.19479 7.19806 7.84485 8.43899 9.18848 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.009018 B = 0.004082 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3103.988224 B = 6857.920105 C = 8676.956599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.072 4.072 3 C -0.138 4.138 4 C -0.051 4.051 5 H 0.120 0.880 6 C 0.521 3.479 7 O -0.571 6.571 8 N -0.717 5.717 9 C 0.139 3.861 10 C -0.111 4.111 11 H 0.074 0.926 12 C -0.099 4.099 13 C -0.121 4.121 14 C 0.136 3.864 15 N -0.610 5.610 16 C -0.273 4.273 17 H 0.058 0.942 18 C -0.031 4.031 19 N -0.926 5.926 20 Si 0.962 3.038 21 H -0.269 1.269 22 H -0.296 1.296 23 H -0.281 1.281 24 C 0.200 3.800 25 C -0.122 4.122 26 C -0.069 4.069 27 C -0.166 4.166 28 C 0.083 3.917 29 N -0.511 5.511 30 C 0.093 3.907 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.039 0.961 34 H 0.065 0.935 35 H 0.043 0.957 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.407 0.593 39 H 0.075 0.925 40 H 0.042 0.958 41 H 0.080 0.920 42 H 0.050 0.950 43 H 0.081 0.919 44 H 0.058 0.942 45 H 0.004 0.996 46 H 0.051 0.949 47 H 0.250 0.750 48 H -0.020 1.020 49 H 0.053 0.947 50 H 0.157 0.843 51 H 0.160 0.840 52 H 0.176 0.824 53 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.473 10.187 -8.209 14.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.091 4.091 3 C -0.195 4.195 4 C -0.073 4.073 5 H 0.138 0.862 6 C 0.308 3.692 7 O -0.451 6.451 8 N -0.367 5.367 9 C 0.015 3.985 10 C -0.131 4.131 11 H 0.092 0.908 12 C -0.137 4.137 13 C -0.160 4.160 14 C 0.011 3.989 15 N -0.333 5.333 16 C -0.403 4.403 17 H 0.076 0.924 18 C -0.228 4.228 19 N -0.570 5.570 20 Si 0.789 3.211 21 H -0.194 1.194 22 H -0.223 1.223 23 H -0.207 1.207 24 C 0.074 3.926 25 C -0.125 4.125 26 C -0.094 4.094 27 C -0.186 4.186 28 C -0.074 4.074 29 N -0.220 5.220 30 C -0.063 4.063 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.242 0.758 39 H 0.093 0.907 40 H 0.061 0.939 41 H 0.099 0.901 42 H 0.069 0.931 43 H 0.099 0.901 44 H 0.077 0.923 45 H 0.022 0.978 46 H 0.069 0.931 47 H 0.060 0.940 48 H -0.002 1.002 49 H 0.072 0.928 50 H 0.174 0.826 51 H 0.178 0.822 52 H 0.194 0.806 53 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.935 9.496 -9.649 14.782 hybrid contribution 0.468 0.573 1.806 1.952 sum -5.467 10.069 -7.843 13.885 Atomic orbital electron populations 1.21828 0.93826 1.01409 1.03083 1.20950 0.96620 0.96360 0.95141 1.21786 1.00414 0.94250 1.03082 1.20377 0.91693 0.91928 1.03329 0.86202 1.20773 0.75786 0.89179 0.83473 1.90646 1.52799 1.71650 1.30000 1.46110 1.70965 1.10458 1.09204 1.21244 1.00138 0.80217 0.96940 1.21916 0.99708 0.97727 0.93798 0.90796 1.21353 1.01138 0.94019 0.97205 1.21864 0.97408 1.01121 0.95564 1.21119 0.93735 0.85855 0.98225 1.44189 1.76529 1.10133 1.02481 1.19405 1.05603 1.23217 0.92082 0.92415 1.26028 0.94945 1.02342 0.99531 1.70146 1.14479 1.40776 1.31615 0.85312 0.77329 0.78574 0.79851 1.19363 1.22264 1.20676 1.20417 0.90988 0.96900 0.84299 1.20372 0.95111 1.00725 0.96261 1.21842 0.95396 0.95450 0.96749 1.22454 0.94891 1.00874 1.00360 1.23240 1.01746 0.92970 0.89395 1.67676 1.10847 1.15949 1.27492 1.22611 0.89448 0.96207 0.98049 0.91116 0.91233 0.94215 0.91641 0.93739 0.91285 0.91146 0.75751 0.90708 0.93914 0.90120 0.93140 0.90053 0.92273 0.97758 0.93086 0.94040 1.00182 0.92807 0.82563 0.82190 0.80646 0.83977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.04 71.99 0.65 -2.07 16 2 C -0.07 -1.50 1.97 -10.79 -0.02 -1.52 16 3 C -0.14 -2.32 8.88 71.98 0.64 -1.68 16 4 C -0.05 -1.21 1.98 -12.29 -0.02 -1.23 16 5 H 0.12 2.26 7.93 -2.39 -0.02 2.24 16 6 C 0.52 15.73 5.64 87.65 0.49 16.23 16 7 O -0.57 -20.48 15.39 -3.03 -0.05 -20.53 16 8 N -0.72 -21.98 5.33 -463.07 -2.47 -24.45 16 9 C 0.14 4.48 5.07 86.38 0.44 4.92 16 10 C -0.11 -3.83 2.37 -10.71 -0.03 -3.85 16 11 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 12 C -0.10 -3.03 5.17 30.62 0.16 -2.87 16 13 C -0.12 -3.82 6.08 30.67 0.19 -3.63 16 14 C 0.14 5.61 6.52 86.36 0.56 6.17 16 15 N -0.61 -29.77 2.94 -699.08 -2.06 -31.83 16 16 C -0.27 -14.47 9.49 84.03 0.80 -13.67 16 17 H 0.06 3.03 7.84 -2.91 -0.02 3.01 16 18 C -0.03 -1.67 5.10 84.86 0.43 -1.23 16 19 N -0.93 -52.20 11.42 21.65 0.25 -51.95 16 20 Si 0.96 42.27 29.56 68.60 2.03 44.30 16 21 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 22 H -0.30 -13.27 7.11 99.48 0.71 -12.56 16 23 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 24 C 0.20 9.10 4.29 86.37 0.37 9.47 16 25 C -0.12 -3.20 3.31 -19.77 -0.07 -3.26 16 26 C -0.07 -1.63 9.81 22.47 0.22 -1.41 16 27 C -0.17 -3.87 10.11 22.36 0.23 -3.65 16 28 C 0.08 2.15 11.18 84.69 0.95 3.10 16 29 N -0.51 -15.95 10.36 -195.84 -2.03 -17.98 16 30 C 0.09 2.84 10.04 84.67 0.85 3.69 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.04 0.92 6.86 -2.39 -0.02 0.90 16 34 H 0.07 1.64 7.13 -2.39 -0.02 1.62 16 35 H 0.04 0.85 7.08 -2.39 -0.02 0.84 16 36 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 38 H 0.41 12.02 7.70 -92.71 -0.71 11.30 16 39 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 42 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 45 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 46 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 47 H 0.25 13.66 8.31 -92.70 -0.77 12.89 16 48 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 49 H 0.05 2.66 5.79 -2.39 -0.01 2.64 16 50 H 0.16 2.95 8.00 -2.91 -0.02 2.93 16 51 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16 52 H 0.18 3.51 8.06 -2.91 -0.02 3.48 16 53 H 0.14 4.52 7.51 -2.91 -0.02 4.49 16 Total: -1.00 -67.80 416.42 2.68 -65.12 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: 0.17 Total: 33.82 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 6.84 Total: 3.49 kcal Atomic # 7 Polarization: -119.90 SS G_CDS: -6.31 Total: -126.21 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.05 Total: -20.53 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -67.80 2.68 -65.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000437582313.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.205 kcal (2) G-P(sol) polarization free energy of solvation -67.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds