Wall clock time and date at job start Wed Apr 1 2020 03:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47176 * 2 1 4 4 C 1.52995 * 109.47365 * 120.00619 * 2 1 3 5 5 H 1.09000 * 109.46840 * 298.93324 * 4 2 1 6 6 C 1.50703 * 109.47323 * 178.93685 * 4 2 1 7 7 O 1.21277 * 120.00216 * 264.24016 * 6 4 2 8 8 N 1.34775 * 119.99902 * 84.23342 * 6 4 2 9 9 C 1.46503 * 119.99641 * 176.37067 * 8 6 4 10 10 C 1.53002 * 109.46731 * 180.02562 * 9 8 6 11 11 H 1.08998 * 109.49991 * 304.93255 * 10 9 8 12 12 C 1.53045 * 109.49586 * 184.83805 * 10 9 8 13 13 C 1.53042 * 109.53971 * 178.68544 * 12 10 9 14 14 C 1.53197 * 109.31273 * 61.36210 * 13 12 10 15 15 N 1.46926 * 108.77640 * 305.36777 * 14 13 12 16 16 C 1.36933 * 120.62997 * 233.58758 * 15 14 13 17 17 H 1.08000 * 120.00213 * 151.97423 * 16 15 14 18 18 C 1.38817 * 119.99861 * 331.96853 * 16 15 14 19 19 N 1.31615 * 120.00399 * 342.22938 * 18 16 15 20 20 Si 1.86803 * 119.99683 * 162.22327 * 18 16 15 21 21 H 1.48504 * 109.46905 * 60.00816 * 20 18 16 22 22 H 1.48499 * 109.46983 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47466 * 300.00656 * 20 18 16 24 24 C 1.46924 * 118.73626 * 53.60653 * 15 14 13 25 25 C 1.50697 * 109.47172 * 58.93823 * 4 2 1 26 26 C 1.38676 * 120.41614 * 239.72042 * 25 4 2 27 27 C 1.38624 * 118.42254 * 179.78253 * 26 25 4 28 28 C 1.38235 * 119.15775 * 0.51372 * 27 26 25 29 29 N 1.31845 * 120.76274 * 359.72620 * 28 27 26 30 30 C 1.31892 * 121.73066 * 359.97438 * 29 28 27 31 31 H 1.08993 * 109.47113 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46549 * 299.99830 * 1 2 3 33 33 H 1.08997 * 109.47015 * 59.99240 * 1 2 3 34 34 H 1.09004 * 109.46890 * 240.00584 * 2 1 3 35 35 H 1.08997 * 109.46807 * 175.52609 * 3 2 1 36 36 H 1.08998 * 109.47411 * 295.52945 * 3 2 1 37 37 H 1.08999 * 109.46794 * 55.53338 * 3 2 1 38 38 H 0.96998 * 120.00036 * 356.37352 * 8 6 4 39 39 H 1.08995 * 109.47166 * 60.00596 * 9 8 6 40 40 H 1.08999 * 109.47302 * 299.99988 * 9 8 6 41 41 H 1.08995 * 109.46062 * 298.70230 * 12 10 9 42 42 H 1.08993 * 109.46008 * 58.66274 * 12 10 9 43 43 H 1.09009 * 109.49580 * 301.41415 * 13 12 10 44 44 H 1.08993 * 109.52566 * 181.33213 * 13 12 10 45 45 H 1.08996 * 109.58589 * 185.57819 * 14 13 12 46 46 H 1.08996 * 109.69915 * 65.22501 * 14 13 12 47 47 H 0.96991 * 120.00456 * 179.97438 * 19 18 16 48 48 H 1.09001 * 109.58357 * 186.60230 * 24 15 14 49 49 H 1.08998 * 109.58808 * 66.17973 * 24 15 14 50 50 H 1.08005 * 120.79134 * 0.02562 * 26 25 4 51 51 H 1.07996 * 120.42523 * 180.26534 * 27 26 25 52 52 H 1.07994 * 119.61476 * 179.74788 * 28 27 26 53 53 H 1.07994 * 119.62388 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6924 -0.1967 2.1390 6 6 3.5469 -0.7442 1.2360 7 8 4.1349 -1.7135 0.8054 8 7 4.2409 0.3126 1.7026 9 6 5.7037 0.2590 1.7638 10 6 6.2391 1.5768 2.3277 11 1 5.8603 2.4077 1.7326 12 6 7.7688 1.5688 2.2797 13 6 8.3045 2.8995 2.8130 14 6 7.8674 3.0739 4.2709 15 7 6.4063 2.9380 4.3460 16 6 5.6442 3.9126 4.9327 17 1 4.6228 4.0634 4.6159 18 6 6.1845 4.7069 5.9348 19 7 7.2741 4.3216 6.5645 20 14 5.3650 6.3229 6.3895 21 1 3.9768 6.0621 6.8478 22 1 6.1313 6.9766 7.4807 23 1 5.3351 7.2141 5.2022 24 6 5.7787 1.7361 3.7800 25 6 1.5164 -2.1344 1.2622 26 6 0.7257 -2.5804 2.3105 27 6 0.2625 -3.8865 2.2783 28 6 0.6107 -4.6985 1.2151 29 7 1.3688 -4.2419 0.2378 30 6 1.8224 -3.0035 0.2325 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8901 33 1 -0.3633 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 3.1271 1.4435 0.0802 36 1 1.7436 1.9328 -0.9273 37 1 1.6128 1.9789 0.8473 38 1 3.7720 1.1087 1.9980 39 1 6.1038 0.1029 0.7620 40 1 6.0104 -0.5635 2.4099 41 1 8.1471 0.7524 2.8947 42 1 8.0991 1.4308 1.2502 43 1 7.9067 3.7184 2.2135 44 1 9.3930 2.9028 2.7567 45 1 8.1611 4.0621 4.6247 46 1 8.3377 2.3096 4.8895 47 1 7.6518 4.8767 7.2644 48 1 4.6942 1.8417 3.8100 49 1 6.0787 0.8612 4.3566 50 1 0.4733 -1.9244 3.1307 51 1 -0.3591 -4.2662 3.0756 52 1 0.2573 -5.7186 1.1846 53 1 2.4406 -2.6649 -0.5857 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000437582315.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:22 Heat of formation + Delta-G solvation = -20.220500 kcal Electronic energy + Delta-G solvation = -31058.552201 eV Core-core repulsion = 27121.973167 eV Total energy + Delta-G solvation = -3936.579034 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.84921 -40.47725 -39.35556 -37.20328 -36.28123 -34.65841 -33.47258 -32.33330 -32.29600 -31.96505 -28.87699 -27.91108 -27.23247 -26.44942 -24.57021 -23.86710 -23.49730 -22.62160 -21.81001 -21.03701 -20.44136 -18.69799 -18.27620 -18.02603 -17.16165 -16.95912 -16.75692 -16.59762 -16.06243 -15.81436 -15.63632 -15.26616 -15.09551 -14.92162 -14.54180 -14.49331 -14.32598 -14.00186 -13.95050 -13.75898 -13.70042 -13.56629 -13.40374 -13.01692 -12.98463 -12.87140 -12.83316 -12.47377 -12.30879 -12.09600 -11.96338 -11.82568 -11.81194 -11.69375 -11.57393 -11.32664 -11.09847 -10.93126 -10.55026 -10.50731 -10.36021 -10.03871 -9.85352 -8.66779 -7.85429 -5.30848 0.17841 0.38646 1.48601 1.51343 1.57585 1.60754 2.20698 2.52709 2.92326 3.29537 3.41159 3.59568 3.64994 3.72202 3.86133 3.99623 4.01478 4.02706 4.07412 4.11719 4.12785 4.22837 4.35566 4.40932 4.49806 4.58104 4.61710 4.66645 4.71460 4.77191 4.83103 4.88444 4.90209 4.91462 4.99903 5.01277 5.02899 5.10877 5.21090 5.21493 5.23836 5.31648 5.33693 5.39228 5.40698 5.42806 5.49304 5.58066 5.68058 5.78546 5.81363 6.40089 6.54252 7.07284 7.16198 7.22608 7.87810 8.40388 9.20956 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.013432 B = 0.002566 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.144860 B =10910.187652 C =11533.105761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.075 4.075 3 C -0.161 4.161 4 C -0.054 4.054 5 H 0.123 0.877 6 C 0.519 3.481 7 O -0.576 6.576 8 N -0.714 5.714 9 C 0.137 3.863 10 C -0.099 4.099 11 H 0.079 0.921 12 C -0.098 4.098 13 C -0.129 4.129 14 C 0.173 3.827 15 N -0.608 5.608 16 C -0.261 4.261 17 H 0.073 0.927 18 C -0.052 4.052 19 N -0.937 5.937 20 Si 0.965 3.035 21 H -0.273 1.273 22 H -0.299 1.299 23 H -0.277 1.277 24 C 0.154 3.846 25 C -0.125 4.125 26 C -0.074 4.074 27 C -0.171 4.171 28 C 0.081 3.919 29 N -0.520 5.520 30 C 0.117 3.883 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.412 0.588 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.079 0.921 43 H 0.054 0.946 44 H 0.067 0.933 45 H 0.050 0.950 46 H -0.009 1.009 47 H 0.248 0.752 48 H 0.059 0.941 49 H 0.003 0.997 50 H 0.159 0.841 51 H 0.166 0.834 52 H 0.176 0.824 53 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.760 -10.094 -12.679 21.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.094 4.094 3 C -0.219 4.219 4 C -0.076 4.076 5 H 0.141 0.859 6 C 0.306 3.694 7 O -0.455 6.455 8 N -0.366 5.366 9 C 0.013 3.987 10 C -0.120 4.120 11 H 0.097 0.903 12 C -0.136 4.136 13 C -0.168 4.168 14 C 0.047 3.953 15 N -0.331 5.331 16 C -0.391 4.391 17 H 0.091 0.909 18 C -0.248 4.248 19 N -0.583 5.583 20 Si 0.794 3.206 21 H -0.198 1.198 22 H -0.226 1.226 23 H -0.203 1.203 24 C 0.028 3.972 25 C -0.128 4.128 26 C -0.100 4.100 27 C -0.191 4.191 28 C -0.076 4.076 29 N -0.229 5.229 30 C -0.040 4.040 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.249 0.751 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.073 0.927 44 H 0.086 0.914 45 H 0.068 0.932 46 H 0.009 0.991 47 H 0.057 0.943 48 H 0.078 0.922 49 H 0.021 0.979 50 H 0.176 0.824 51 H 0.183 0.817 52 H 0.193 0.807 53 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.038 -11.254 -13.518 22.504 hybrid contribution -0.094 1.611 1.564 2.248 sum -14.131 -9.643 -11.954 20.870 Atomic orbital electron populations 1.21781 0.92935 1.01688 1.03176 1.21017 0.97384 0.96184 0.94796 1.22075 1.01319 0.94755 1.03705 1.20382 0.90085 0.93927 1.03171 0.85888 1.20799 0.90368 0.81876 0.76317 1.90692 1.72154 1.34906 1.47750 1.46153 1.07515 1.18216 1.64755 1.21245 0.79613 0.97121 1.00718 1.21710 0.96698 0.96304 0.97239 0.90278 1.21337 0.93992 0.97058 1.01191 1.21991 0.99867 0.97617 0.97369 1.20615 0.83343 0.98902 0.92436 1.44293 1.02659 1.19097 1.67077 1.19514 0.97239 1.09722 1.12616 0.90923 1.25809 0.99222 1.03374 0.96356 1.70196 1.25104 1.38005 1.25015 0.85372 0.77969 0.80203 0.77102 1.19841 1.22577 1.20321 1.21010 0.96469 0.87962 0.91739 1.20396 0.99832 0.95979 0.96571 1.21876 0.94262 0.96679 0.97165 1.22448 1.01777 0.94347 1.00500 1.23274 0.93402 1.01244 0.89631 1.67692 1.11153 1.15744 1.28304 1.22517 0.94962 0.88777 0.97704 0.93504 0.91080 0.91440 0.91684 0.92794 0.91141 0.90757 0.75093 0.91117 0.92909 0.92902 0.90289 0.92699 0.91415 0.93156 0.99099 0.94254 0.92246 0.97926 0.82382 0.81674 0.80676 0.84327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.93 71.98 0.64 -1.10 16 2 C -0.07 -1.15 2.31 -10.79 -0.02 -1.18 16 3 C -0.16 -2.26 8.55 71.98 0.62 -1.65 16 4 C -0.05 -0.97 1.98 -12.29 -0.02 -1.00 16 5 H 0.12 1.70 7.93 -2.39 -0.02 1.69 16 6 C 0.52 12.81 6.31 87.66 0.55 13.36 16 7 O -0.58 -18.73 14.59 -3.02 -0.04 -18.77 16 8 N -0.71 -16.45 4.17 -463.06 -1.93 -18.38 16 9 C 0.14 3.60 5.07 86.38 0.44 4.04 16 10 C -0.10 -2.93 2.38 -10.71 -0.03 -2.96 16 11 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 12 C -0.10 -2.93 5.17 30.62 0.16 -2.77 16 13 C -0.13 -4.61 6.08 30.67 0.19 -4.42 16 14 C 0.17 8.16 5.31 86.36 0.46 8.62 16 15 N -0.61 -29.09 2.99 -699.11 -2.09 -31.18 16 16 C -0.26 -13.64 9.58 84.04 0.80 -12.84 16 17 H 0.07 3.59 7.89 -2.91 -0.02 3.57 16 18 C -0.05 -2.84 4.89 84.86 0.42 -2.43 16 19 N -0.94 -54.82 11.24 21.65 0.24 -54.58 16 20 Si 0.97 43.35 29.59 68.60 2.03 45.38 16 21 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 22 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 23 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 24 C 0.15 5.84 5.60 86.36 0.48 6.32 16 25 C -0.13 -2.58 3.33 -19.77 -0.07 -2.65 16 26 C -0.07 -1.22 9.81 22.47 0.22 -1.00 16 27 C -0.17 -2.59 10.11 22.36 0.23 -2.36 16 28 C 0.08 1.52 11.18 84.69 0.95 2.47 16 29 N -0.52 -13.25 10.36 -195.85 -2.03 -15.28 16 30 C 0.12 2.94 9.09 84.67 0.77 3.71 16 31 H 0.05 0.68 7.18 -2.39 -0.02 0.67 16 32 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.06 1.18 7.45 -2.38 -0.02 1.16 16 35 H 0.05 0.89 5.80 -2.39 -0.01 0.88 16 36 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.41 8.19 6.71 -92.71 -0.62 7.57 16 39 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 44 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.05 2.71 6.08 -2.39 -0.01 2.69 16 46 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 47 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 48 H 0.06 2.10 7.13 -2.39 -0.02 2.08 16 49 H 0.00 0.11 8.14 -2.39 -0.02 0.10 16 50 H 0.16 1.76 8.00 -2.91 -0.02 1.74 16 51 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 52 H 0.18 2.23 8.06 -2.91 -0.02 2.20 16 53 H 0.14 3.76 6.93 -2.91 -0.02 3.74 16 Total: -1.00 -70.44 411.32 3.22 -67.22 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 0.26 Total: 23.42 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 6.78 Total: 2.18 kcal Atomic # 7 Polarization: -113.62 SS G_CDS: -5.81 Total: -119.43 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.04 Total: -18.77 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -70.44 3.22 -67.22 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000437582315.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.003 kcal (2) G-P(sol) polarization free energy of solvation -70.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds