Wall clock time and date at job start Wed Apr 1 2020 03:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47161 * 2 1 4 4 C 1.53003 * 109.46828 * 119.99716 * 2 1 3 5 5 H 1.09003 * 109.47313 * 299.38277 * 4 2 1 6 6 C 1.50699 * 109.47264 * 179.38300 * 4 2 1 7 7 O 1.21288 * 119.99920 * 324.09116 * 6 4 2 8 8 N 1.34769 * 120.00233 * 144.08713 * 6 4 2 9 9 C 1.46502 * 120.00190 * 184.19516 * 8 6 4 10 10 C 1.52998 * 109.47124 * 180.02562 * 9 8 6 11 11 H 1.08998 * 109.50211 * 55.00154 * 10 9 8 12 12 C 1.53047 * 109.49716 * 175.06606 * 10 9 8 13 13 C 1.53038 * 109.53688 * 181.28301 * 12 10 9 14 14 C 1.53190 * 109.34128 * 298.68017 * 13 12 10 15 15 N 1.46923 * 108.77580 * 54.61999 * 14 13 12 16 16 C 1.36937 * 120.63218 * 126.41579 * 15 14 13 17 17 H 1.08005 * 119.99292 * 321.34070 * 16 15 14 18 18 C 1.38807 * 120.00133 * 141.34280 * 16 15 14 19 19 N 1.31619 * 120.00108 * 353.65867 * 18 16 15 20 20 Si 1.86808 * 119.99825 * 173.65698 * 18 16 15 21 21 H 1.48499 * 109.47091 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46921 * 120.00259 * 20 18 16 23 23 H 1.48501 * 109.47099 * 239.99901 * 20 18 16 24 24 C 1.46932 * 118.73749 * 306.39488 * 15 14 13 25 25 C 1.50694 * 109.46995 * 59.38477 * 4 2 1 26 26 C 1.38673 * 120.41881 * 239.72071 * 25 4 2 27 27 C 1.38631 * 118.42259 * 179.78485 * 26 25 4 28 28 C 1.38226 * 119.15827 * 0.51151 * 27 26 25 29 29 N 1.31849 * 120.76643 * 359.72473 * 28 27 26 30 30 C 1.31885 * 121.72448 * 0.02562 * 29 28 27 31 31 H 1.09001 * 109.47414 * 300.00280 * 1 2 3 32 32 H 1.09003 * 109.46763 * 59.99779 * 1 2 3 33 33 H 1.08997 * 109.47192 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47414 * 239.99720 * 2 1 3 35 35 H 1.09001 * 109.46993 * 305.98837 * 3 2 1 36 36 H 1.09001 * 109.47157 * 65.99256 * 3 2 1 37 37 H 1.09004 * 109.47168 * 185.98831 * 3 2 1 38 38 H 0.97006 * 120.00085 * 4.19786 * 8 6 4 39 39 H 1.08999 * 109.47445 * 60.00180 * 9 8 6 40 40 H 1.08998 * 109.46917 * 299.99999 * 9 8 6 41 41 H 1.09003 * 109.45494 * 301.33396 * 12 10 9 42 42 H 1.08999 * 109.46169 * 61.28934 * 12 10 9 43 43 H 1.09001 * 109.49146 * 178.71032 * 13 12 10 44 44 H 1.09003 * 109.46961 * 58.63506 * 13 12 10 45 45 H 1.09003 * 109.58607 * 294.83566 * 14 13 12 46 46 H 1.08999 * 109.70490 * 174.47885 * 14 13 12 47 47 H 0.97000 * 119.99882 * 180.02562 * 19 18 16 48 48 H 1.08997 * 109.58378 * 293.81689 * 24 15 14 49 49 H 1.09005 * 109.69835 * 173.46201 * 24 15 14 50 50 H 1.08002 * 120.79481 * 0.02562 * 26 25 4 51 51 H 1.08004 * 120.42305 * 180.21931 * 27 26 25 52 52 H 1.08001 * 119.61699 * 179.71066 * 28 27 26 53 53 H 1.08001 * 119.62045 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6857 -0.2010 2.1393 6 6 3.5469 -0.7345 1.2418 7 8 4.1471 -0.8518 0.1944 8 7 4.2276 -0.6161 2.3989 9 6 5.6904 -0.5365 2.3833 10 6 6.2094 -0.4083 3.8169 11 1 5.8256 -1.2326 4.4179 12 6 7.7393 -0.4489 3.8118 13 6 8.2586 -0.3528 5.2481 14 6 7.8117 0.9780 5.8613 15 7 6.3518 1.0884 5.7389 16 6 5.5766 1.3422 6.8389 17 1 5.8182 0.8845 7.7868 18 6 4.4805 2.1875 6.7354 19 7 4.2579 2.8426 5.6158 20 14 3.3213 2.3954 8.1855 21 1 3.7887 1.5554 9.3173 22 1 3.3000 3.8207 8.6018 23 1 1.9531 1.9749 7.7897 24 6 5.7393 0.9219 4.4137 25 6 1.5252 -2.1375 1.2570 26 6 0.7334 -2.5911 2.3011 27 6 0.2786 -3.9002 2.2639 28 6 0.6359 -4.7072 1.2002 29 7 1.3948 -4.2435 0.2268 30 6 1.8412 -3.0025 0.2268 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.5918 1.9863 -0.8315 36 1 1.7670 1.9244 0.9388 37 1 3.1248 1.4444 -0.1072 38 1 3.7491 -0.5835 3.2420 39 1 6.0009 0.3336 1.8050 40 1 6.0985 -1.4393 1.9290 41 1 8.0762 -1.3844 3.3651 42 1 8.1229 0.3896 3.2305 43 1 9.3474 -0.4049 5.2455 44 1 7.8560 -1.1777 5.8360 45 1 8.2864 1.8028 5.3298 46 1 8.0938 1.0109 6.9136 47 1 3.4922 3.4336 5.5437 48 1 6.0450 1.7422 3.7643 49 1 4.6535 0.9163 4.5089 50 1 0.4738 -1.9389 3.1220 51 1 -0.3430 -4.2860 3.0584 52 1 0.2897 -5.7297 1.1660 53 1 2.4611 -2.6582 -0.5879 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000437582317.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:27 Heat of formation + Delta-G solvation = -26.997126 kcal Electronic energy + Delta-G solvation = -31502.568527 eV Core-core repulsion = 27565.695637 eV Total energy + Delta-G solvation = -3936.872890 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.84058 -40.50361 -39.36320 -37.17273 -36.06459 -34.79630 -33.57551 -32.66013 -32.33488 -31.58107 -28.91774 -27.97350 -27.23690 -26.49885 -24.62101 -23.91063 -23.53850 -22.56546 -21.88817 -20.90845 -20.38604 -18.72184 -18.29801 -18.12301 -17.11618 -16.98100 -16.91081 -16.65109 -16.03699 -15.72840 -15.50943 -15.25850 -15.20533 -15.03560 -14.53394 -14.46816 -14.41354 -14.04759 -13.99599 -13.79421 -13.74754 -13.55857 -13.33377 -13.07883 -12.89853 -12.85807 -12.82595 -12.61889 -12.27630 -12.14323 -11.96624 -11.89305 -11.81340 -11.67448 -11.55463 -11.31985 -11.09251 -11.01604 -10.63673 -10.56621 -10.42097 -10.05875 -9.88864 -8.49224 -7.85509 -5.45014 0.09361 0.31365 1.46006 1.49898 1.59098 1.59548 2.21342 2.50668 2.82829 3.29282 3.43559 3.59240 3.65141 3.68971 3.75405 3.98099 4.00590 4.05214 4.06466 4.07554 4.14955 4.19105 4.34315 4.37069 4.48684 4.54009 4.62460 4.63575 4.66887 4.76429 4.80539 4.84135 4.87667 4.88265 4.94790 4.98359 5.03662 5.15250 5.16955 5.17688 5.23989 5.26408 5.32714 5.36879 5.38248 5.41179 5.50306 5.54364 5.68564 5.74937 5.77209 6.47113 6.51837 6.99901 7.19217 7.20134 7.85263 8.44132 9.19121 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.009648 B = 0.003364 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2901.416583 B = 8320.582859 C = 9080.381124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.070 4.070 3 C -0.149 4.149 4 C -0.053 4.053 5 H 0.111 0.889 6 C 0.522 3.478 7 O -0.572 6.572 8 N -0.717 5.717 9 C 0.139 3.861 10 C -0.111 4.111 11 H 0.068 0.932 12 C -0.099 4.099 13 C -0.121 4.121 14 C 0.137 3.863 15 N -0.611 5.611 16 C -0.272 4.272 17 H 0.058 0.942 18 C -0.032 4.032 19 N -0.927 5.927 20 Si 0.962 3.038 21 H -0.269 1.269 22 H -0.295 1.295 23 H -0.283 1.283 24 C 0.198 3.802 25 C -0.125 4.125 26 C -0.071 4.071 27 C -0.162 4.162 28 C 0.085 3.915 29 N -0.511 5.511 30 C 0.097 3.903 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.057 0.943 37 H 0.035 0.965 38 H 0.407 0.593 39 H 0.051 0.949 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.054 0.946 43 H 0.081 0.919 44 H 0.056 0.944 45 H 0.008 0.992 46 H 0.050 0.950 47 H 0.251 0.749 48 H -0.013 1.013 49 H 0.055 0.945 50 H 0.156 0.844 51 H 0.169 0.831 52 H 0.181 0.819 53 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.989 -11.072 -7.456 15.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.089 4.089 3 C -0.206 4.206 4 C -0.075 4.075 5 H 0.129 0.871 6 C 0.309 3.691 7 O -0.452 6.452 8 N -0.367 5.367 9 C 0.015 3.985 10 C -0.132 4.132 11 H 0.087 0.913 12 C -0.137 4.137 13 C -0.160 4.160 14 C 0.011 3.989 15 N -0.334 5.334 16 C -0.402 4.402 17 H 0.075 0.925 18 C -0.229 4.229 19 N -0.572 5.572 20 Si 0.790 3.210 21 H -0.194 1.194 22 H -0.222 1.222 23 H -0.209 1.209 24 C 0.072 3.928 25 C -0.127 4.127 26 C -0.097 4.097 27 C -0.182 4.182 28 C -0.072 4.072 29 N -0.219 5.219 30 C -0.060 4.060 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.242 0.758 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.072 0.928 43 H 0.100 0.900 44 H 0.075 0.925 45 H 0.026 0.974 46 H 0.069 0.931 47 H 0.061 0.939 48 H 0.005 0.995 49 H 0.073 0.927 50 H 0.174 0.826 51 H 0.186 0.814 52 H 0.198 0.802 53 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.429 -11.575 -8.901 16.383 hybrid contribution -0.711 1.316 1.692 2.259 sum -8.140 -10.259 -7.209 14.949 Atomic orbital electron populations 1.21777 0.92813 1.01890 1.02960 1.20949 0.96981 0.95553 0.95439 1.21856 1.00294 0.95760 1.02673 1.20357 0.90308 0.94067 1.02793 0.87122 1.20758 0.90290 0.74863 0.83197 1.90642 1.71338 1.51071 1.32136 1.46124 1.07943 1.73405 1.09274 1.21242 0.79511 1.00891 0.96884 1.21912 0.97295 0.99993 0.93954 0.91337 1.21354 0.93423 1.01826 0.97114 1.21866 1.00432 0.97819 0.95896 1.21110 0.84442 0.94991 0.98336 1.44193 1.01174 1.83275 1.04752 1.19405 1.08649 1.21564 0.90584 0.92484 1.26009 1.02069 0.95701 0.99109 1.70124 1.29709 1.30271 1.27049 0.85305 0.78850 0.77065 0.79796 1.19396 1.22159 1.20880 1.20452 0.97032 0.90716 0.84554 1.20348 1.00324 0.95143 0.96899 1.21882 0.93975 0.96747 0.97057 1.22492 1.01207 0.94010 1.00458 1.23342 0.93041 1.01389 0.89389 1.67718 1.11090 1.15072 1.28062 1.22603 0.96731 0.89079 0.97558 0.91635 0.91302 0.92896 0.91115 0.90784 0.92403 0.94606 0.75755 0.93108 0.91438 0.90485 0.92761 0.90041 0.92540 0.97444 0.93130 0.93939 0.99469 0.92662 0.82592 0.81397 0.80189 0.84106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 8.94 71.98 0.64 -1.82 16 2 C -0.07 -1.61 2.02 -10.79 -0.02 -1.63 16 3 C -0.15 -3.63 8.83 71.98 0.64 -3.00 16 4 C -0.05 -1.28 1.97 -12.29 -0.02 -1.31 16 5 H 0.11 2.41 7.91 -2.39 -0.02 2.39 16 6 C 0.52 16.02 5.54 87.66 0.49 16.51 16 7 O -0.57 -20.77 15.26 -3.05 -0.05 -20.81 16 8 N -0.72 -22.26 5.33 -463.07 -2.47 -24.72 16 9 C 0.14 4.51 5.07 86.38 0.44 4.94 16 10 C -0.11 -3.85 2.37 -10.72 -0.03 -3.87 16 11 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 12 C -0.10 -3.04 5.17 30.62 0.16 -2.89 16 13 C -0.12 -3.85 6.08 30.67 0.19 -3.66 16 14 C 0.14 5.58 6.52 86.36 0.56 6.15 16 15 N -0.61 -29.59 2.95 -699.09 -2.06 -31.65 16 16 C -0.27 -14.37 9.50 84.03 0.80 -13.57 16 17 H 0.06 3.00 7.84 -2.91 -0.02 2.97 16 18 C -0.03 -1.69 5.11 84.86 0.43 -1.25 16 19 N -0.93 -51.75 11.38 21.65 0.25 -51.50 16 20 Si 0.96 42.27 29.56 68.60 2.03 44.30 16 21 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 22 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 23 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 24 C 0.20 8.90 4.29 86.36 0.37 9.27 16 25 C -0.12 -2.83 3.48 -19.78 -0.07 -2.90 16 26 C -0.07 -1.29 9.81 22.47 0.22 -1.07 16 27 C -0.16 -2.52 10.11 22.36 0.23 -2.29 16 28 C 0.09 1.58 11.18 84.69 0.95 2.52 16 29 N -0.51 -12.95 10.36 -195.84 -2.03 -14.97 16 30 C 0.10 2.52 9.99 84.67 0.85 3.37 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.05 0.97 7.20 -2.39 -0.02 0.95 16 34 H 0.07 1.80 7.13 -2.39 -0.02 1.79 16 35 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.03 1.05 7.10 -2.38 -0.02 1.03 16 38 H 0.41 12.21 7.68 -92.70 -0.71 11.50 16 39 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 46 H 0.05 2.04 7.93 -2.39 -0.02 2.02 16 47 H 0.25 13.56 8.31 -92.71 -0.77 12.78 16 48 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 49 H 0.05 2.69 5.76 -2.38 -0.01 2.68 16 50 H 0.16 2.20 8.00 -2.91 -0.02 2.18 16 51 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 52 H 0.18 2.18 8.06 -2.91 -0.02 2.16 16 53 H 0.14 4.05 7.09 -2.91 -0.02 4.03 16 Total: -1.00 -66.64 416.06 2.65 -63.99 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: 0.17 Total: 31.87 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 6.81 Total: 3.51 kcal Atomic # 7 Polarization: -116.54 SS G_CDS: -6.31 Total: -122.85 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.05 Total: -20.81 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -66.64 2.65 -63.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000437582317.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.991 kcal (2) G-P(sol) polarization free energy of solvation -66.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds