Wall clock time and date at job start Wed Apr 1 2020 03:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47053 * 2 1 4 4 C 1.50703 * 109.46840 * 119.99516 * 2 1 3 5 5 H 1.08007 * 119.99551 * 117.91862 * 4 2 1 6 6 C 1.37875 * 120.00141 * 297.91742 * 4 2 1 7 7 N 1.31512 * 120.00100 * 3.20904 * 6 4 2 8 8 Si 1.86802 * 120.00072 * 182.93350 * 6 4 2 9 9 H 1.48504 * 109.46987 * 84.98607 * 8 6 4 10 10 H 1.48494 * 109.47535 * 204.99236 * 8 6 4 11 11 H 1.48501 * 109.46952 * 324.99323 * 8 6 4 12 12 C 1.52998 * 109.47554 * 239.99903 * 2 1 3 13 13 N 1.46492 * 109.47112 * 59.99793 * 12 2 1 14 14 C 1.34778 * 120.00401 * 180.02562 * 13 12 2 15 15 O 1.21588 * 119.99690 * 0.02562 * 14 13 12 16 16 N 1.34771 * 120.00598 * 180.02562 * 14 13 12 17 17 C 1.46504 * 120.00293 * 180.02562 * 16 14 13 18 18 H 1.08998 * 110.27092 * 325.70101 * 17 16 14 19 19 C 1.54594 * 110.30873 * 87.78618 * 17 16 14 20 20 C 1.55196 * 102.80333 * 96.98145 * 19 17 16 21 21 N 1.48535 * 103.23379 * 37.43431 * 20 19 17 22 22 C 1.46902 * 110.99698 * 200.25810 * 21 20 19 23 23 C 1.50700 * 109.47074 * 307.39366 * 22 21 20 24 24 C 1.38232 * 119.99760 * 269.72811 * 23 22 21 25 25 C 1.38247 * 119.99534 * 179.78890 * 24 23 22 26 26 C 1.38232 * 119.99876 * 0.46133 * 25 24 23 27 27 C 1.38233 * 119.99933 * 359.77308 * 26 25 24 28 28 C 1.38228 * 120.00128 * 0.02562 * 27 26 25 29 29 C 1.47899 * 105.82121 * 320.76956 * 21 20 19 30 30 H 1.09005 * 109.47459 * 300.00565 * 1 2 3 31 31 H 1.09009 * 109.46858 * 60.00265 * 1 2 3 32 32 H 1.08998 * 109.47283 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47177 * 174.03453 * 3 2 1 34 34 H 1.08996 * 109.47310 * 294.03565 * 3 2 1 35 35 H 1.08998 * 109.47352 * 54.03755 * 3 2 1 36 36 H 0.96998 * 119.99966 * 179.72291 * 7 6 4 37 37 H 1.09001 * 109.47257 * 180.02562 * 12 2 1 38 38 H 1.08999 * 109.46719 * 300.00169 * 12 2 1 39 39 H 0.97006 * 120.00542 * 0.02562 * 13 12 2 40 40 H 0.97005 * 119.99753 * 359.97438 * 16 14 13 41 41 H 1.08998 * 110.72284 * 215.32045 * 19 17 16 42 42 H 1.09000 * 110.72439 * 338.60060 * 19 17 16 43 43 H 1.08997 * 110.68285 * 278.98877 * 20 19 17 44 44 H 1.08997 * 110.78644 * 155.92322 * 20 19 17 45 45 H 1.08998 * 109.47198 * 67.40044 * 22 21 20 46 46 H 1.09005 * 109.46984 * 187.39328 * 22 21 20 47 47 H 1.08004 * 120.00755 * 359.97438 * 24 23 22 48 48 H 1.08000 * 119.99723 * 180.25720 * 25 24 23 49 49 H 1.08006 * 119.99703 * 179.78707 * 26 25 24 50 50 H 1.08003 * 119.99831 * 179.97438 * 27 26 25 51 51 H 1.08000 * 119.99692 * 179.97438 * 28 27 26 52 52 H 1.09007 * 109.91737 * 265.98006 * 29 21 20 53 53 H 1.08997 * 110.08546 * 144.77536 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6251 -1.6077 1.1318 6 6 1.7349 -0.2147 2.4823 7 7 0.9608 0.8414 2.6046 8 14 2.4254 -1.0478 4.0050 9 1 3.7891 -0.5273 4.2787 10 1 1.5450 -0.7644 5.1667 11 1 2.4913 -2.5142 3.7800 12 6 2.0401 -0.7212 -1.2492 13 7 1.5518 -0.0307 -2.4453 14 6 1.8770 -0.4914 -3.6695 15 8 2.5753 -1.4805 -3.7810 16 7 1.4282 0.1441 -4.7699 17 6 1.7813 -0.3571 -6.1005 18 1 2.7854 -0.7809 -6.0902 19 6 0.7561 -1.4174 -6.5640 20 6 -0.2130 -0.5933 -7.4529 21 7 0.6900 0.3597 -8.1475 22 6 -0.0574 1.5175 -8.6563 23 6 -1.2203 1.0391 -9.4869 24 6 -1.0640 0.8418 -10.8461 25 6 -2.1297 0.3988 -11.6072 26 6 -3.3541 0.1623 -11.0106 27 6 -3.5115 0.3643 -9.6522 28 6 -2.4449 0.8033 -8.8905 29 6 1.6897 0.7754 -7.1399 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1247 1.4444 0.1068 34 1 1.7665 1.9246 -0.9385 35 1 1.5921 1.9863 0.8318 36 1 0.7484 1.1877 3.4854 37 1 3.1301 -0.7216 -1.2489 38 1 1.6767 -1.7489 -1.2491 39 1 0.9943 0.7582 -2.3565 40 1 0.8708 0.9330 -4.6810 41 1 1.2453 -2.1981 -7.1464 42 1 0.2299 -1.8442 -5.7101 43 1 -0.9378 -0.0586 -6.8391 44 1 -0.7199 -1.2366 -8.1721 45 1 -0.4278 2.1077 -7.8182 46 1 0.5997 2.1325 -9.2713 47 1 -0.1087 1.0308 -11.3130 48 1 -2.0065 0.2406 -12.6684 49 1 -4.1875 -0.1805 -11.6059 50 1 -4.4682 0.1799 -9.1862 51 1 -2.5681 0.9615 -7.8293 52 1 1.3682 1.6980 -6.6565 53 1 2.6599 0.9235 -7.6141 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457497373.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:19 Heat of formation + Delta-G solvation = -18.214243 kcal Electronic energy + Delta-G solvation = -29984.617350 eV Core-core repulsion = 26048.125314 eV Total energy + Delta-G solvation = -3936.492036 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.38064 -40.49404 -39.29153 -38.10303 -35.55539 -34.97912 -33.34599 -32.43436 -31.75783 -30.85739 -29.28157 -27.55598 -27.42011 -26.69317 -26.05961 -23.54769 -22.80743 -22.39299 -21.78451 -21.19628 -20.55727 -19.55136 -17.85306 -17.76824 -17.35424 -17.07249 -16.60167 -16.40189 -16.32775 -16.09622 -15.74033 -15.36362 -15.00166 -14.85760 -14.65560 -14.58970 -14.25296 -14.15619 -13.99840 -13.70422 -13.32966 -13.25240 -13.08513 -13.00782 -12.84992 -12.65755 -12.59364 -12.50074 -12.37845 -12.22565 -12.14229 -11.98961 -11.77405 -11.71159 -11.47085 -11.34455 -11.12847 -10.69369 -10.40621 -10.28051 -9.77049 -9.74963 -9.67048 -9.33808 -8.02073 -6.16540 0.44600 0.54968 1.43195 1.45632 1.53182 1.78147 2.21154 2.46647 2.78639 3.19090 3.21991 3.45584 3.53157 3.65177 3.95062 3.99127 4.10086 4.20160 4.25458 4.33352 4.37334 4.42758 4.44980 4.54803 4.63378 4.65601 4.71065 4.73040 4.81208 4.86724 4.96658 5.01099 5.05307 5.06522 5.10584 5.11797 5.15438 5.20800 5.21174 5.39250 5.50005 5.60928 5.64136 5.67095 5.68195 5.68961 5.71589 5.87457 5.98123 6.07817 6.15337 6.16283 6.22464 6.44117 6.87433 7.16710 7.50744 7.65588 8.97325 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.023011 B = 0.001803 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.503068 B =15526.773204 C =16032.856593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.051 3.949 3 C -0.116 4.116 4 C -0.528 4.528 5 H 0.044 0.956 6 C 0.028 3.972 7 N -0.899 5.899 8 Si 0.944 3.056 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.277 1.277 12 C 0.169 3.831 13 N -0.726 5.726 14 C 0.698 3.302 15 O -0.639 6.639 16 N -0.727 5.727 17 C 0.153 3.847 18 H 0.078 0.922 19 C -0.132 4.132 20 C 0.049 3.951 21 N -0.512 5.512 22 C 0.085 3.915 23 C -0.092 4.092 24 C -0.110 4.110 25 C -0.130 4.130 26 C -0.129 4.129 27 C -0.132 4.132 28 C -0.123 4.123 29 C 0.040 3.960 30 H 0.061 0.939 31 H 0.036 0.964 32 H 0.016 0.984 33 H 0.017 0.983 34 H 0.037 0.963 35 H 0.060 0.940 36 H 0.260 0.740 37 H 0.035 0.965 38 H 0.033 0.967 39 H 0.405 0.595 40 H 0.407 0.593 41 H 0.078 0.922 42 H 0.060 0.940 43 H 0.050 0.950 44 H 0.078 0.922 45 H 0.052 0.948 46 H 0.095 0.905 47 H 0.131 0.869 48 H 0.137 0.863 49 H 0.137 0.863 50 H 0.133 0.867 51 H 0.122 0.878 52 H 0.069 0.931 53 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.956 5.036 -27.861 29.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.050 3.950 3 C -0.174 4.174 4 C -0.567 4.567 5 H 0.062 0.938 6 C -0.172 4.172 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.202 1.202 12 C 0.044 3.956 13 N -0.382 5.382 14 C 0.398 3.602 15 O -0.521 6.521 16 N -0.383 5.383 17 C 0.047 3.953 18 H 0.096 0.904 19 C -0.172 4.172 20 C -0.078 4.078 21 N -0.237 5.237 22 C -0.042 4.042 23 C -0.092 4.092 24 C -0.129 4.129 25 C -0.148 4.148 26 C -0.147 4.147 27 C -0.150 4.150 28 C -0.142 4.142 29 C -0.089 4.089 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.241 0.759 40 H 0.243 0.757 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.096 0.904 45 H 0.070 0.930 46 H 0.114 0.886 47 H 0.149 0.851 48 H 0.155 0.845 49 H 0.154 0.846 50 H 0.151 0.849 51 H 0.140 0.860 52 H 0.087 0.913 53 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.137 4.043 -28.252 29.418 hybrid contribution -0.461 0.371 2.013 2.098 sum -7.598 4.414 -26.239 27.671 Atomic orbital electron populations 1.21651 0.97086 0.98559 1.00251 1.18374 0.93275 0.93104 0.90263 1.21632 0.98276 0.97838 0.99667 1.21250 1.33236 1.10602 0.91572 0.93784 1.25445 0.95171 0.95643 1.00913 1.69917 1.36319 1.23892 1.23592 0.85790 0.78349 0.78920 0.79827 1.20449 1.20855 1.20185 1.21082 0.96672 0.94576 0.83236 1.45213 1.55835 1.33182 1.03934 1.16179 0.80073 0.82668 0.81277 1.90865 1.45013 1.29576 1.86653 1.45125 1.56437 1.32915 1.03865 1.21595 0.99058 0.94471 0.80148 0.90352 1.22920 0.97181 0.98007 0.99048 1.23178 0.94384 0.94669 0.95616 1.64965 1.13108 1.13380 1.32232 1.21302 0.93109 0.91833 0.97917 1.19834 0.94477 1.00382 0.94517 1.21247 0.99396 0.98816 0.93434 1.21444 0.93131 0.99344 1.00870 1.21455 0.98193 0.99854 0.95216 1.21383 0.99343 0.99662 0.94579 1.21248 0.93015 0.99864 1.00069 1.23134 0.98428 0.95981 0.91328 0.91991 0.94497 0.96438 0.96419 0.94373 0.92097 0.93063 0.94677 0.94812 0.75861 0.75685 0.90310 0.92115 0.93158 0.90371 0.92972 0.88639 0.85105 0.84474 0.84561 0.84926 0.85959 0.91288 0.88026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.18 8.10 71.98 0.58 -4.60 16 2 C 0.05 2.33 0.50 -52.93 -0.03 2.30 16 3 C -0.12 -5.11 8.04 71.98 0.58 -4.54 16 4 C -0.53 -27.98 8.01 25.60 0.21 -27.78 16 5 H 0.04 2.39 7.75 -2.91 -0.02 2.37 16 6 C 0.03 1.48 5.14 84.65 0.44 1.92 16 7 N -0.90 -47.75 9.43 21.45 0.20 -47.55 16 8 Si 0.94 42.72 29.54 68.60 2.03 44.74 16 9 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 C 0.17 7.26 4.50 86.38 0.39 7.65 16 13 N -0.73 -24.93 4.91 -478.56 -2.35 -27.28 16 14 C 0.70 23.80 8.56 179.06 1.53 25.33 16 15 O -0.64 -27.65 16.02 -3.99 -0.06 -27.71 16 16 N -0.73 -17.11 5.07 -453.62 -2.30 -19.42 16 17 C 0.15 3.30 3.31 45.87 0.15 3.46 16 18 H 0.08 2.06 7.60 -2.39 -0.02 2.04 16 19 C -0.13 -2.83 6.80 31.89 0.22 -2.61 16 20 C 0.05 0.84 4.98 86.74 0.43 1.27 16 21 N -0.51 -7.95 5.39 -887.03 -4.78 -12.73 16 22 C 0.09 1.10 5.19 85.56 0.44 1.55 16 23 C -0.09 -1.33 4.59 -19.87 -0.09 -1.42 16 24 C -0.11 -1.53 9.70 22.27 0.22 -1.31 16 25 C -0.13 -1.64 10.05 22.27 0.22 -1.42 16 26 C -0.13 -1.62 10.05 22.27 0.22 -1.40 16 27 C -0.13 -1.78 10.05 22.27 0.22 -1.55 16 28 C -0.12 -1.78 8.34 22.27 0.19 -1.60 16 29 C 0.04 0.60 6.47 86.45 0.56 1.16 16 30 H 0.06 3.04 6.12 -2.38 -0.01 3.02 16 31 H 0.04 1.34 6.86 -2.38 -0.02 1.33 16 32 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.04 1.38 6.71 -2.39 -0.02 1.36 16 35 H 0.06 2.95 6.22 -2.39 -0.01 2.94 16 36 H 0.26 13.32 8.31 -92.71 -0.77 12.55 16 37 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.40 11.84 6.17 -92.70 -0.57 11.27 16 40 H 0.41 7.12 8.32 -92.70 -0.77 6.35 16 41 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.06 1.53 8.05 -2.39 -0.02 1.51 16 43 H 0.05 0.82 7.09 -2.39 -0.02 0.80 16 44 H 0.08 1.43 7.72 -2.39 -0.02 1.41 16 45 H 0.05 0.61 7.76 -2.39 -0.02 0.60 16 46 H 0.10 1.05 8.08 -2.38 -0.02 1.03 16 47 H 0.13 1.50 8.06 -2.91 -0.02 1.48 16 48 H 0.14 1.18 8.06 -2.91 -0.02 1.15 16 49 H 0.14 1.16 8.06 -2.91 -0.02 1.13 16 50 H 0.13 1.37 8.06 -2.91 -0.02 1.34 16 51 H 0.12 1.58 7.38 -2.91 -0.02 1.56 16 52 H 0.07 0.86 7.04 -2.38 -0.02 0.84 16 53 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -63.86 412.34 -1.22 -65.08 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: -0.44 Total: 28.45 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 6.48 Total: -3.59 kcal Atomic # 7 Polarization: -97.74 SS G_CDS: -9.23 Total: -106.97 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.06 Total: -27.71 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -63.86 -1.22 -65.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457497373.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.866 kcal (2) G-P(sol) polarization free energy of solvation -63.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds