Wall clock time and date at job start Wed Apr 1 2020 03:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47091 * 2 1 4 4 C 1.50704 * 109.47100 * 239.99825 * 2 1 3 5 5 H 1.07989 * 120.00333 * 241.34630 * 4 2 1 6 6 C 1.37880 * 119.99771 * 61.34820 * 4 2 1 7 7 N 1.31508 * 120.00253 * 193.97371 * 6 4 2 8 8 Si 1.86806 * 119.99770 * 13.97621 * 6 4 2 9 9 H 1.48498 * 109.47076 * 84.55319 * 8 6 4 10 10 H 1.48507 * 109.46686 * 204.54625 * 8 6 4 11 11 H 1.48491 * 109.47499 * 324.54638 * 8 6 4 12 12 C 1.53000 * 109.47238 * 120.00312 * 2 1 3 13 13 N 1.46502 * 109.46916 * 299.99997 * 12 2 1 14 14 C 1.34774 * 120.00275 * 180.02562 * 13 12 2 15 15 O 1.21591 * 119.99664 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00358 * 180.02562 * 14 13 12 17 17 C 1.46504 * 120.00201 * 180.02562 * 16 14 13 18 18 H 1.09003 * 110.28881 * 35.66519 * 17 16 14 19 19 C 1.54256 * 110.31852 * 273.54309 * 17 16 14 20 20 C 1.54382 * 105.06185 * 241.10094 * 19 17 16 21 21 N 1.48558 * 104.59311 * 336.15110 * 20 19 17 22 22 C 1.46902 * 111.00229 * 159.03825 * 21 20 19 23 23 C 1.50692 * 109.47010 * 74.57921 * 22 21 20 24 24 C 1.38243 * 120.00071 * 269.72761 * 23 22 21 25 25 C 1.38239 * 119.99552 * 179.76756 * 24 23 22 26 26 C 1.38229 * 120.00250 * 0.48705 * 25 24 23 27 27 C 1.38236 * 120.00195 * 359.78903 * 26 25 24 28 28 C 1.38235 * 119.99774 * 359.95463 * 27 26 25 29 29 C 1.48557 * 104.22449 * 39.47916 * 21 20 19 30 30 H 1.08997 * 109.47312 * 309.36423 * 1 2 3 31 31 H 1.08999 * 109.47467 * 69.36708 * 1 2 3 32 32 H 1.09003 * 109.47267 * 189.36537 * 1 2 3 33 33 H 1.09004 * 109.46968 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47223 * 299.99923 * 3 2 1 35 35 H 1.09003 * 109.47349 * 60.00488 * 3 2 1 36 36 H 0.96998 * 120.00741 * 179.97438 * 7 6 4 37 37 H 1.08997 * 109.47582 * 179.97438 * 12 2 1 38 38 H 1.09002 * 109.47305 * 59.99918 * 12 2 1 39 39 H 0.97003 * 119.99821 * 359.97438 * 13 12 2 40 40 H 0.96995 * 120.00054 * 359.97438 * 16 14 13 41 41 H 1.08997 * 110.32844 * 0.02562 * 19 17 16 42 42 H 1.09004 * 110.32570 * 122.20731 * 19 17 16 43 43 H 1.08997 * 110.41151 * 94.92374 * 20 19 17 44 44 H 1.08993 * 110.41442 * 217.36972 * 20 19 17 45 45 H 1.08997 * 109.46986 * 194.58422 * 22 21 20 46 46 H 1.08997 * 109.46983 * 314.57926 * 22 21 20 47 47 H 1.07995 * 119.99953 * 359.97438 * 24 23 22 48 48 H 1.08003 * 119.99436 * 180.24962 * 25 24 23 49 49 H 1.08001 * 120.00185 * 179.76694 * 26 25 24 50 50 H 1.08003 * 119.99972 * 179.97438 * 27 26 25 51 51 H 1.08007 * 119.99863 * 179.97438 * 28 27 26 52 52 H 1.09005 * 110.41716 * 201.74084 * 29 21 20 53 53 H 1.09002 * 110.41452 * 79.29507 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6351 -1.6010 -1.1316 6 6 1.7222 -0.2234 -2.4826 7 7 1.9157 -0.9725 -3.5460 8 14 1.0275 1.5007 -2.6683 9 1 2.1416 2.4816 -2.7084 10 1 0.2469 1.5865 -3.9288 11 1 0.1417 1.8043 -1.5159 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8776 -0.4909 3.6695 15 8 2.5766 -1.4795 3.7810 16 7 1.4279 0.1441 4.7699 17 6 1.7828 -0.3558 6.1006 18 1 2.7968 -0.7556 6.0961 19 6 0.7815 -1.4397 6.5501 20 6 0.1305 -0.8776 7.8321 21 7 1.1224 0.0939 8.3606 22 6 0.4836 1.0591 9.2652 23 6 0.1798 0.3897 10.5806 24 6 -1.0375 -0.2368 10.7725 25 6 -1.3142 -0.8550 11.9775 26 6 -0.3778 -0.8380 12.9942 27 6 0.8372 -0.2066 12.8044 28 6 1.1161 0.4070 11.5975 29 6 1.6525 0.7701 7.1487 30 1 -0.3634 0.6518 0.7945 31 1 -0.3634 0.3621 -0.9617 32 1 -0.3634 -1.0140 0.1672 33 1 3.1300 1.4424 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6972 -0.6300 -4.4268 37 1 3.1299 -0.7217 1.2490 38 1 1.6766 -1.7490 1.2492 39 1 0.9942 0.7582 2.3564 40 1 0.8700 0.9325 4.6810 41 1 0.0264 -1.6002 5.7806 42 1 1.3043 -2.3710 6.7681 43 1 -0.8056 -0.3730 7.5933 44 1 -0.0406 -1.6766 8.5534 45 1 1.1562 1.9004 9.4323 46 1 -0.4431 1.4182 8.8176 47 1 -1.7708 -0.2462 9.9797 48 1 -2.2636 -1.3480 12.1260 49 1 -0.5955 -1.3178 13.9370 50 1 1.5686 -0.1930 13.5989 51 1 2.0652 0.9007 11.4493 52 1 2.6274 1.2117 7.3554 53 1 0.9545 1.5326 6.8028 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457497374.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:24 Heat of formation + Delta-G solvation = -4.251190 kcal Electronic energy + Delta-G solvation = -29737.116291 eV Core-core repulsion = 25801.229739 eV Total energy + Delta-G solvation = -3935.886552 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.34109 -40.42833 -39.37241 -38.36664 -35.61297 -34.97808 -33.61997 -32.94404 -31.73204 -30.81958 -29.36840 -28.00598 -27.39902 -26.82957 -26.08550 -23.48210 -22.73971 -22.41506 -21.89725 -21.20875 -20.86963 -19.50257 -18.03978 -17.85982 -17.33882 -17.17991 -17.02852 -16.36681 -16.26968 -16.08611 -15.84516 -15.41372 -14.99557 -14.95340 -14.73278 -14.68957 -14.39227 -14.27586 -14.19326 -13.96272 -13.76419 -13.73682 -13.29504 -13.15706 -13.06813 -12.72725 -12.44135 -12.39607 -12.37111 -12.12493 -11.94172 -11.88049 -11.79560 -11.74887 -11.63325 -11.30334 -11.03678 -10.60530 -10.38600 -10.30946 -9.77213 -9.72028 -9.69487 -9.41074 -8.28615 -6.30419 0.46831 0.56574 1.37552 1.39032 1.52289 1.73493 2.20978 2.36103 2.79047 3.07290 3.19654 3.48590 3.54141 3.67722 3.96471 4.00706 4.09368 4.11257 4.21962 4.27794 4.31633 4.35776 4.38047 4.41947 4.43262 4.61320 4.66383 4.72007 4.76059 4.80501 4.84754 4.85595 4.87397 4.94651 4.99412 5.04577 5.08174 5.13918 5.17239 5.20657 5.21757 5.44941 5.47334 5.58381 5.62152 5.68250 5.72263 5.74689 5.81638 5.87755 5.96883 6.08537 6.18318 6.32778 6.73863 7.18562 7.34233 7.66087 8.88575 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.032321 B = 0.001670 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.101858 B =16760.962151 C =16869.556203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.027 3.973 3 C -0.145 4.145 4 C -0.518 4.518 5 H 0.026 0.974 6 C 0.015 3.985 7 N -0.946 5.946 8 Si 0.947 3.053 9 H -0.282 1.282 10 H -0.316 1.316 11 H -0.202 1.202 12 C 0.178 3.822 13 N -0.725 5.725 14 C 0.699 3.301 15 O -0.640 6.640 16 N -0.724 5.724 17 C 0.161 3.839 18 H 0.072 0.928 19 C -0.134 4.134 20 C 0.044 3.956 21 N -0.513 5.513 22 C 0.085 3.915 23 C -0.086 4.086 24 C -0.123 4.123 25 C -0.132 4.132 26 C -0.132 4.132 27 C -0.132 4.132 28 C -0.113 4.113 29 C 0.039 3.961 30 H 0.067 0.933 31 H 0.044 0.956 32 H 0.038 0.962 33 H 0.045 0.955 34 H 0.034 0.966 35 H 0.075 0.925 36 H 0.264 0.736 37 H 0.038 0.962 38 H 0.035 0.965 39 H 0.408 0.592 40 H 0.411 0.589 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.078 0.922 45 H 0.094 0.906 46 H 0.058 0.942 47 H 0.126 0.874 48 H 0.134 0.866 49 H 0.136 0.864 50 H 0.135 0.865 51 H 0.128 0.872 52 H 0.098 0.902 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.890 9.865 33.953 36.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.026 3.974 3 C -0.201 4.201 4 C -0.556 4.556 5 H 0.044 0.956 6 C -0.182 4.182 7 N -0.586 5.586 8 Si 0.776 3.224 9 H -0.210 1.210 10 H -0.246 1.246 11 H -0.126 1.126 12 C 0.053 3.947 13 N -0.382 5.382 14 C 0.399 3.601 15 O -0.521 6.521 16 N -0.381 5.381 17 C 0.055 3.945 18 H 0.090 0.910 19 C -0.174 4.174 20 C -0.084 4.084 21 N -0.237 5.237 22 C -0.042 4.042 23 C -0.087 4.087 24 C -0.141 4.141 25 C -0.150 4.150 26 C -0.150 4.150 27 C -0.150 4.150 28 C -0.131 4.131 29 C -0.089 4.089 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.246 0.754 40 H 0.248 0.752 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.096 0.904 45 H 0.113 0.887 46 H 0.076 0.924 47 H 0.144 0.856 48 H 0.152 0.848 49 H 0.153 0.847 50 H 0.153 0.847 51 H 0.146 0.854 52 H 0.116 0.884 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.839 8.701 34.185 36.135 hybrid contribution -0.831 0.894 -1.519 1.949 sum -8.670 9.595 32.665 35.132 Atomic orbital electron populations 1.22190 0.95944 1.00561 1.00853 1.18669 0.93877 0.93198 0.91676 1.22271 1.00933 0.96677 1.00268 1.21028 1.32912 1.11065 0.90622 0.95589 1.25884 0.95417 1.01722 0.95170 1.70115 1.50719 1.38340 0.99400 0.86309 0.79383 0.79757 0.76973 1.20971 1.24570 1.12568 1.20848 0.96959 0.94504 0.82359 1.45093 1.56076 1.33323 1.03663 1.16156 0.80037 0.82637 0.81308 1.90894 1.44906 1.29711 1.86626 1.45010 1.56327 1.33154 1.03641 1.21415 0.98724 0.94272 0.80103 0.90973 1.22715 0.98585 0.98791 0.97271 1.23072 0.93885 0.96305 0.95097 1.65393 1.31085 1.14360 1.12851 1.21231 0.98930 0.93943 0.90114 1.19830 0.94300 0.99167 0.95377 1.21250 0.96917 0.98065 0.97904 1.21399 1.00242 0.99726 0.93612 1.21449 0.94125 0.99558 0.99840 1.21432 0.97628 0.98091 0.97847 1.21238 0.99148 0.99540 0.93208 1.23280 1.02205 0.94819 0.88617 0.91450 0.93672 0.94237 0.93600 0.94731 0.90628 0.92719 0.94369 0.94623 0.75443 0.75205 0.91330 0.91983 0.92334 0.90389 0.88739 0.92433 0.85568 0.84761 0.84656 0.84709 0.85357 0.88395 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.12 7.53 71.98 0.54 -4.58 16 2 C 0.03 1.14 0.50 -52.93 -0.03 1.11 16 3 C -0.14 -5.28 7.52 71.98 0.54 -4.74 16 4 C -0.52 -28.63 8.62 25.60 0.22 -28.41 16 5 H 0.03 1.64 7.99 -2.92 -0.02 1.62 16 6 C 0.02 0.87 5.32 84.66 0.45 1.32 16 7 N -0.95 -58.81 13.96 21.45 0.30 -58.51 16 8 Si 0.95 42.33 22.79 68.60 1.56 43.89 16 9 H -0.28 -12.39 7.10 99.48 0.71 -11.69 16 10 H -0.32 -14.63 7.11 99.48 0.71 -13.92 16 11 H -0.20 -7.51 4.65 99.48 0.46 -7.05 16 12 C 0.18 7.15 4.49 86.38 0.39 7.54 16 13 N -0.73 -21.83 5.01 -478.53 -2.40 -24.23 16 14 C 0.70 21.87 8.56 179.06 1.53 23.40 16 15 O -0.64 -26.77 16.04 -4.00 -0.06 -26.83 16 16 N -0.72 -14.92 5.05 -453.53 -2.29 -17.21 16 17 C 0.16 3.22 3.36 45.88 0.15 3.38 16 18 H 0.07 1.89 7.64 -2.39 -0.02 1.87 16 19 C -0.13 -2.67 6.78 31.49 0.21 -2.46 16 20 C 0.04 0.66 5.71 86.45 0.49 1.16 16 21 N -0.51 -7.35 5.33 -886.08 -4.72 -12.07 16 22 C 0.09 0.96 4.98 85.55 0.43 1.38 16 23 C -0.09 -1.17 5.19 -19.87 -0.10 -1.27 16 24 C -0.12 -1.60 8.96 22.27 0.20 -1.40 16 25 C -0.13 -1.63 10.05 22.27 0.22 -1.41 16 26 C -0.13 -1.59 10.05 22.27 0.22 -1.37 16 27 C -0.13 -1.66 10.05 22.27 0.22 -1.44 16 28 C -0.11 -1.54 9.70 22.27 0.22 -1.32 16 29 C 0.04 0.51 6.16 86.45 0.53 1.04 16 30 H 0.07 1.88 7.13 -2.39 -0.02 1.86 16 31 H 0.04 1.77 4.30 -2.39 -0.01 1.76 16 32 H 0.04 1.51 8.12 -2.39 -0.02 1.49 16 33 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.03 1.32 2.25 -2.39 -0.01 1.31 16 35 H 0.07 2.06 6.86 -2.39 -0.02 2.04 16 36 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 37 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.04 1.59 8.14 -2.39 -0.02 1.58 16 39 H 0.41 9.36 6.27 -92.71 -0.58 8.78 16 40 H 0.41 5.44 8.36 -92.71 -0.77 4.67 16 41 H 0.07 1.47 7.95 -2.39 -0.02 1.45 16 42 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 43 H 0.06 0.72 7.75 -2.39 -0.02 0.70 16 44 H 0.08 1.26 7.90 -2.39 -0.02 1.24 16 45 H 0.09 0.87 8.03 -2.39 -0.02 0.85 16 46 H 0.06 0.54 7.71 -2.39 -0.02 0.52 16 47 H 0.13 1.32 8.06 -2.91 -0.02 1.30 16 48 H 0.13 1.16 8.06 -2.91 -0.02 1.14 16 49 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 50 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 51 H 0.13 1.47 8.06 -2.91 -0.02 1.45 16 52 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 53 H 0.07 0.66 7.59 -2.39 -0.02 0.64 16 Total: -1.00 -74.65 405.71 -1.84 -76.49 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: -0.69 Total: 26.52 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: 6.45 Total: -8.06 kcal Atomic # 7 Polarization: -102.91 SS G_CDS: -9.11 Total: -112.01 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.06 Total: -26.83 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 1.56 Total: 43.89 kcal Total: -74.65 -1.84 -76.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457497374.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.243 kcal (2) G-P(sol) polarization free energy of solvation -74.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds