Wall clock time and date at job start Wed Apr 1 2020 04:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47416 * 2 1 4 4 N 1.46501 * 109.47504 * 120.00208 * 2 1 3 5 5 C 1.46505 * 119.99706 * 305.50130 * 4 2 1 6 6 C 1.50709 * 109.46690 * 269.99661 * 5 4 2 7 7 H 1.08001 * 119.99894 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99702 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00106 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99791 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47295 * 90.00436 * 10 8 6 12 12 H 1.48505 * 109.46964 * 210.00166 * 10 8 6 13 13 H 1.48500 * 109.47264 * 330.00064 * 10 8 6 14 14 C 1.34776 * 120.00189 * 125.49328 * 4 2 1 15 15 O 1.21284 * 119.99804 * 185.52277 * 14 4 2 16 16 C 1.50699 * 119.99963 * 5.52983 * 14 4 2 17 17 H 1.08991 * 109.53703 * 44.91298 * 16 14 4 18 18 C 1.53124 * 109.50090 * 284.81408 * 16 14 4 19 19 C 1.53111 * 109.15831 * 182.40722 * 18 16 14 20 20 C 1.53035 * 109.28242 * 57.65791 * 19 18 16 21 21 N 1.46848 * 109.52209 * 300.81756 * 20 19 18 22 22 C 1.46896 * 111.00281 * 185.83656 * 21 20 19 23 23 C 1.50702 * 109.47131 * 66.04854 * 22 21 20 24 24 C 1.38670 * 120.41660 * 269.98013 * 23 22 21 25 25 C 1.38630 * 118.42235 * 180.02562 * 24 23 22 26 26 C 1.38227 * 119.16041 * 0.02562 * 25 24 23 27 27 N 1.31859 * 120.75997 * 359.97438 * 26 25 24 28 28 C 1.31881 * 121.73019 * 0.02562 * 27 26 25 29 29 C 1.46855 * 111.19462 * 61.74176 * 21 20 19 30 30 H 1.09002 * 109.46563 * 299.99777 * 1 2 3 31 31 H 1.09000 * 109.47044 * 59.99686 * 1 2 3 32 32 H 1.08997 * 109.47052 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47291 * 240.00078 * 2 1 3 34 34 H 1.09000 * 109.47121 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46755 * 300.00279 * 3 2 1 36 36 H 1.09001 * 109.46827 * 59.99794 * 3 2 1 37 37 H 1.08994 * 109.47152 * 29.99281 * 5 4 2 38 38 H 1.08994 * 109.47002 * 150.00194 * 5 4 2 39 39 H 0.97006 * 120.00248 * 179.97438 * 9 8 6 40 40 H 1.09003 * 109.51627 * 62.50003 * 18 16 14 41 41 H 1.08999 * 109.52048 * 302.31603 * 18 16 14 42 42 H 1.09001 * 109.50753 * 297.70969 * 19 18 16 43 43 H 1.09006 * 109.50315 * 177.59955 * 19 18 16 44 44 H 1.09004 * 109.46703 * 180.80450 * 20 19 18 45 45 H 1.09004 * 109.46440 * 60.83054 * 20 19 18 46 46 H 1.09001 * 109.47380 * 306.05027 * 22 21 20 47 47 H 1.08999 * 109.47453 * 186.04760 * 22 21 20 48 48 H 1.08000 * 120.78910 * 0.04345 * 24 23 22 49 49 H 1.07997 * 120.42464 * 179.97438 * 25 24 23 50 50 H 1.07999 * 119.62077 * 180.02562 * 26 25 24 51 51 H 1.07999 * 119.61866 * 179.71833 * 28 27 26 52 52 H 1.08990 * 109.46287 * 58.27510 * 29 21 20 53 53 H 1.09001 * 109.45876 * 178.24274 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.5680 -0.2642 2.5234 6 6 2.5042 0.7893 3.0571 7 1 3.3503 1.1089 2.4668 8 6 2.2805 1.3451 4.2988 9 7 1.2505 0.9556 5.0178 10 14 3.4413 2.6505 4.9606 11 1 2.9623 3.9941 4.5478 12 1 3.4801 2.5727 6.4431 13 1 4.8043 2.4223 4.4172 14 6 2.8820 -1.7183 1.0755 15 8 3.2086 -2.3541 2.0554 16 6 3.4418 -2.0774 -0.2768 17 1 3.7502 -1.1701 -0.7962 18 6 2.3697 -2.7978 -1.0990 19 6 2.9646 -3.2120 -2.4476 20 6 4.1859 -4.1028 -2.2090 21 7 5.1823 -3.3682 -1.4192 22 6 6.4244 -4.1415 -1.2880 23 6 7.0730 -4.2833 -2.6409 24 6 6.7655 -5.3611 -3.4574 25 6 7.3868 -5.4510 -4.6934 26 6 8.2863 -4.4706 -5.0679 27 7 8.5546 -3.4594 -4.2653 28 6 7.9826 -3.3417 -3.0829 29 6 4.6493 -3.0011 -0.1010 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 0.5614 0.1474 2.4505 38 1 1.5625 -1.1206 3.1976 39 1 1.0933 1.3463 5.8916 40 1 1.5256 -2.1280 -1.2634 41 1 2.0331 -3.6844 -0.5615 42 1 3.2654 -2.3226 -3.0013 43 1 2.2187 -3.7630 -3.0206 44 1 4.6204 -4.3879 -3.1672 45 1 3.8818 -4.9986 -1.6674 46 1 6.1966 -5.1299 -0.8889 47 1 7.1047 -3.6243 -0.6114 48 1 6.0585 -6.1125 -3.1381 49 1 7.1715 -6.2771 -5.3549 50 1 8.7744 -4.5331 -6.0293 51 1 8.2309 -2.5017 -2.4511 52 1 4.3431 -3.9019 0.4306 53 1 5.4203 -2.4859 0.4719 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522585592.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:38 Heat of formation + Delta-G solvation = -22.401408 kcal Electronic energy + Delta-G solvation = -31292.161223 eV Core-core repulsion = 27355.487618 eV Total energy + Delta-G solvation = -3936.673605 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.56215 -41.02751 -39.26462 -37.57619 -35.55877 -34.82304 -33.15852 -32.41392 -32.16417 -32.07491 -29.30162 -28.04577 -27.57068 -25.72093 -24.59500 -24.39565 -23.85761 -22.82650 -22.25086 -20.86736 -19.54406 -18.58945 -18.27833 -17.90410 -17.29458 -17.17354 -16.81507 -16.38635 -16.18130 -15.77828 -15.57772 -15.32276 -14.99507 -14.82412 -14.73418 -14.59837 -14.27144 -14.12054 -13.97159 -13.91197 -13.64571 -13.57118 -13.31212 -13.19140 -13.03398 -12.89085 -12.77215 -12.54965 -12.33038 -12.23509 -12.21306 -12.10146 -11.85563 -11.73930 -11.63835 -11.52106 -11.29606 -10.70003 -10.60428 -10.43226 -10.34451 -9.93161 -9.40109 -9.33572 -8.19535 -6.31461 0.19573 0.38103 1.35299 1.37840 1.47756 1.81668 2.26307 2.41524 2.76758 3.09789 3.13837 3.56618 3.58775 3.73687 3.82926 3.88758 3.95613 3.96401 4.11853 4.12302 4.16351 4.22035 4.29328 4.33459 4.40460 4.51127 4.55569 4.58124 4.72344 4.74840 4.81313 4.85210 4.86875 4.91383 4.93716 4.94938 5.01602 5.04452 5.07436 5.12818 5.17762 5.22736 5.26672 5.35018 5.39705 5.46045 5.57645 5.65310 5.82055 5.90652 5.96950 6.08820 6.11981 6.74557 6.85130 7.08898 7.31379 7.50518 8.87667 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.015038 B = 0.002590 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.496362 B =10809.866158 C =11562.025107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.122 3.878 3 C -0.155 4.155 4 N -0.594 5.594 5 C 0.262 3.738 6 C -0.526 4.526 7 H 0.054 0.946 8 C 0.006 3.994 9 N -0.930 5.930 10 Si 0.960 3.040 11 H -0.265 1.265 12 H -0.284 1.284 13 H -0.273 1.273 14 C 0.503 3.497 15 O -0.601 6.601 16 C -0.090 4.090 17 H 0.108 0.892 18 C -0.111 4.111 19 C -0.105 4.105 20 C 0.048 3.952 21 N -0.532 5.532 22 C 0.098 3.902 23 C -0.128 4.128 24 C -0.073 4.073 25 C -0.166 4.166 26 C 0.083 3.917 27 N -0.516 5.516 28 C 0.102 3.898 29 C 0.087 3.913 30 H 0.039 0.961 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.116 0.884 34 H 0.043 0.957 35 H 0.089 0.911 36 H 0.044 0.956 37 H 0.027 0.973 38 H -0.009 1.009 39 H 0.265 0.735 40 H 0.086 0.914 41 H 0.053 0.947 42 H 0.078 0.922 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.034 0.966 46 H 0.052 0.948 47 H 0.084 0.916 48 H 0.149 0.851 49 H 0.164 0.836 50 H 0.176 0.824 51 H 0.153 0.847 52 H 0.028 0.972 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.249 -11.539 -24.621 27.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.019 3.981 3 C -0.213 4.213 4 N -0.324 5.324 5 C 0.140 3.860 6 C -0.564 4.564 7 H 0.072 0.928 8 C -0.192 4.192 9 N -0.570 5.570 10 Si 0.785 3.215 11 H -0.190 1.190 12 H -0.209 1.209 13 H -0.198 1.198 14 C 0.291 3.709 15 O -0.483 6.483 16 C -0.111 4.111 17 H 0.126 0.874 18 C -0.149 4.149 19 C -0.142 4.142 20 C -0.079 4.079 21 N -0.257 5.257 22 C -0.030 4.030 23 C -0.130 4.130 24 C -0.100 4.100 25 C -0.186 4.186 26 C -0.074 4.074 27 N -0.225 5.225 28 C -0.055 4.055 29 C -0.041 4.041 30 H 0.058 0.942 31 H 0.117 0.883 32 H 0.075 0.925 33 H 0.134 0.866 34 H 0.062 0.938 35 H 0.108 0.892 36 H 0.063 0.937 37 H 0.045 0.955 38 H 0.009 0.991 39 H 0.074 0.926 40 H 0.104 0.896 41 H 0.072 0.928 42 H 0.097 0.903 43 H 0.113 0.887 44 H 0.108 0.892 45 H 0.052 0.948 46 H 0.070 0.930 47 H 0.103 0.897 48 H 0.167 0.833 49 H 0.182 0.818 50 H 0.193 0.807 51 H 0.170 0.830 52 H 0.046 0.954 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.008 -10.743 -24.460 27.619 hybrid contribution -0.329 -0.524 2.243 2.327 sum 6.679 -11.268 -22.217 25.790 Atomic orbital electron populations 1.22121 0.94188 1.02247 1.02917 1.21527 0.95303 0.93893 0.87329 1.22127 1.00615 0.96061 1.02533 1.48320 1.44173 1.31555 1.08391 1.18680 0.94720 0.93212 0.79353 1.21662 1.11306 1.21186 1.02276 0.92815 1.25798 0.97110 0.99407 0.96926 1.70056 1.30051 1.44379 1.12548 0.85519 0.79101 0.79485 0.77357 1.18962 1.20913 1.19808 1.21214 0.78703 0.79549 0.91396 1.90617 1.61514 1.53704 1.42461 1.21236 0.96745 1.01176 0.91979 0.87381 1.21701 0.96833 1.00079 0.96266 1.21560 0.96470 1.00740 0.95472 1.22300 0.92411 0.94960 0.98253 1.61911 1.04757 1.44001 1.14988 1.20930 0.91226 0.97316 0.93518 1.20687 0.98582 0.96411 0.97317 1.21796 0.97741 0.96795 0.93634 1.22436 0.97568 1.01158 0.97405 1.23257 0.95236 0.89522 0.99339 1.67714 1.25391 1.24300 1.05051 1.22740 0.92676 0.97648 0.92435 1.21589 0.95447 0.97493 0.89556 0.94190 0.88345 0.92467 0.86603 0.93781 0.89200 0.93685 0.95469 0.99090 0.92642 0.89565 0.92798 0.90331 0.88687 0.89178 0.94803 0.93001 0.89741 0.83326 0.81815 0.80740 0.83000 0.95362 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.37 9.06 71.98 0.65 -3.72 16 2 C 0.12 3.77 2.49 44.99 0.11 3.88 16 3 C -0.16 -4.89 8.62 71.98 0.62 -4.26 16 4 N -0.59 -25.22 2.39 -802.12 -1.92 -27.14 16 5 C 0.26 14.15 4.78 85.63 0.41 14.56 16 6 C -0.53 -30.13 7.86 25.60 0.20 -29.93 16 7 H 0.05 3.06 7.59 -2.91 -0.02 3.04 16 8 C 0.01 0.35 5.46 84.65 0.46 0.81 16 9 N -0.93 -56.78 13.29 21.45 0.28 -56.50 16 10 Si 0.96 45.49 29.54 68.60 2.03 47.51 16 11 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 12 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 13 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 14 C 0.50 21.19 6.90 87.66 0.61 21.80 16 15 O -0.60 -31.59 15.53 -3.04 -0.05 -31.64 16 16 C -0.09 -2.64 1.82 -11.49 -0.02 -2.66 16 17 H 0.11 2.97 7.33 -2.39 -0.02 2.95 16 18 C -0.11 -2.48 4.91 30.67 0.15 -2.33 16 19 C -0.10 -1.69 6.09 30.64 0.19 -1.50 16 20 C 0.05 0.83 5.19 86.32 0.45 1.28 16 21 N -0.53 -11.46 4.65 -900.92 -4.19 -15.65 16 22 C 0.10 1.85 5.14 85.56 0.44 2.29 16 23 C -0.13 -2.21 4.90 -19.77 -0.10 -2.30 16 24 C -0.07 -0.96 8.06 22.47 0.18 -0.78 16 25 C -0.17 -1.86 10.11 22.36 0.23 -1.64 16 26 C 0.08 1.22 11.18 84.69 0.95 2.17 16 27 N -0.52 -10.72 10.36 -195.84 -2.03 -12.75 16 28 C 0.10 2.04 10.86 84.67 0.92 2.96 16 29 C 0.09 2.51 4.17 86.32 0.36 2.87 16 30 H 0.04 1.36 6.51 -2.39 -0.02 1.35 16 31 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.12 2.80 4.14 -2.39 -0.01 2.79 16 34 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.04 1.74 6.93 -2.39 -0.02 1.73 16 37 H 0.03 1.50 6.15 -2.39 -0.01 1.48 16 38 H -0.01 -0.57 7.35 -2.39 -0.02 -0.59 16 39 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 40 H 0.09 1.75 5.93 -2.39 -0.01 1.74 16 41 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 44 H 0.09 1.31 5.77 -2.38 -0.01 1.30 16 45 H 0.03 0.60 8.14 -2.38 -0.02 0.58 16 46 H 0.05 0.92 8.07 -2.39 -0.02 0.90 16 47 H 0.08 1.66 7.93 -2.39 -0.02 1.64 16 48 H 0.15 1.38 7.99 -2.91 -0.02 1.35 16 49 H 0.16 0.78 8.06 -2.91 -0.02 0.75 16 50 H 0.18 1.58 8.06 -2.91 -0.02 1.55 16 51 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 52 H 0.03 0.90 7.91 -2.39 -0.02 0.89 16 53 H 0.06 2.00 8.01 -2.39 -0.02 1.98 16 Total: -1.00 -76.82 409.90 1.82 -75.00 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.88 Total: 17.67 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 6.80 Total: 3.49 kcal Atomic # 7 Polarization: -104.19 SS G_CDS: -7.84 Total: -112.04 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -0.05 Total: -31.64 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -76.82 1.82 -75.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522585592.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.603 kcal (2) G-P(sol) polarization free energy of solvation -76.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds