Wall clock time and date at job start Wed Apr 1 2020 03:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47369 * 2 1 4 4 C 1.53000 * 109.47413 * 120.00031 * 2 1 3 5 5 H 1.08997 * 109.50552 * 59.94305 * 4 2 1 6 6 C 1.53047 * 109.48767 * 299.89147 * 4 2 1 7 7 N 1.46960 * 109.36436 * 181.63108 * 6 4 2 8 8 C 1.46896 * 111.00105 * 183.18660 * 7 6 4 9 9 C 1.50693 * 109.47354 * 170.14942 * 8 7 6 10 10 O 1.21291 * 120.00136 * 0.02562 * 9 8 7 11 11 N 1.34780 * 120.00214 * 179.97438 * 9 8 7 12 12 C 1.37102 * 119.99721 * 180.02562 * 11 9 8 13 13 H 1.07995 * 120.00100 * 0.02562 * 12 11 9 14 14 C 1.38950 * 119.99568 * 180.02562 * 12 11 9 15 15 N 1.31419 * 120.00168 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00048 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.46879 * 60.00045 * 16 14 12 18 18 H 1.48496 * 109.47019 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47038 * 300.00154 * 16 14 12 20 20 C 1.46955 * 110.88083 * 59.31947 * 7 6 4 21 21 C 1.53047 * 109.36520 * 300.68003 * 20 7 6 22 22 N 1.46955 * 109.49035 * 179.97438 * 4 2 1 23 23 C 1.46906 * 110.99864 * 303.15549 * 22 4 2 24 24 C 1.50703 * 109.47109 * 302.24618 * 23 22 4 25 25 C 1.38237 * 119.99944 * 269.72806 * 24 23 22 26 26 C 1.38237 * 119.99929 * 179.76766 * 25 24 23 27 27 C 1.38236 * 119.99572 * 0.48147 * 26 25 24 28 28 C 1.38229 * 120.00556 * 359.79529 * 27 26 25 29 29 C 1.38236 * 120.00062 * 90.00122 * 24 23 22 30 30 H 1.08994 * 109.46410 * 299.99846 * 1 2 3 31 31 H 1.08999 * 109.46926 * 60.00046 * 1 2 3 32 32 H 1.09002 * 109.47006 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47131 * 239.99950 * 2 1 3 34 34 H 1.09000 * 109.47214 * 180.02562 * 3 2 1 35 35 H 1.09009 * 109.46717 * 300.00302 * 3 2 1 36 36 H 1.08994 * 109.47072 * 59.99885 * 3 2 1 37 37 H 1.09003 * 109.48923 * 61.66147 * 6 4 2 38 38 H 1.08997 * 109.50590 * 301.60581 * 6 4 2 39 39 H 1.09000 * 109.47347 * 290.15484 * 8 7 6 40 40 H 1.09008 * 109.46864 * 50.15523 * 8 7 6 41 41 H 0.96998 * 120.00123 * 0.02562 * 11 9 8 42 42 H 0.96996 * 120.00001 * 180.02562 * 15 14 12 43 43 H 1.08999 * 109.48547 * 180.71229 * 20 7 6 44 44 H 1.08997 * 109.49058 * 60.64744 * 20 7 6 45 45 H 1.08999 * 109.48911 * 298.43636 * 21 20 7 46 46 H 1.08997 * 109.51382 * 178.38067 * 21 20 7 47 47 H 1.08992 * 109.47459 * 62.24537 * 23 22 4 48 48 H 1.09004 * 109.47040 * 182.24688 * 23 22 4 49 49 H 1.07998 * 120.00100 * 359.97438 * 25 24 23 50 50 H 1.07994 * 119.99876 * 180.25431 * 26 25 24 51 51 H 1.08003 * 119.99868 * 179.76742 * 27 26 25 52 52 H 1.07996 * 120.00476 * 179.97438 * 28 27 26 53 53 H 1.07999 * 119.99587 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6763 -1.7487 1.2503 6 6 1.5324 0.0015 2.4991 7 7 2.0558 -0.6703 3.6968 8 6 1.5292 -0.0509 4.9203 9 6 1.8872 -0.9043 6.1096 10 8 2.5193 -1.9277 5.9534 11 7 1.5059 -0.5300 7.3469 12 6 1.8321 -1.3063 8.4289 13 1 2.3949 -2.2174 8.2898 14 6 1.4385 -0.9206 9.7045 15 7 0.7532 0.1879 9.8737 16 14 1.8835 -1.9778 11.1789 17 1 3.3608 -2.0918 11.2783 18 1 1.3515 -1.3515 12.4157 19 1 1.2926 -3.3302 11.0146 20 6 3.5254 -0.6705 3.6972 21 6 4.0331 -1.3932 2.4473 22 7 3.5096 -0.7220 1.2493 23 6 4.0358 -1.3418 0.0257 24 6 3.5074 -2.7482 -0.0923 25 6 4.2129 -3.8003 0.4610 26 6 3.7257 -5.0898 0.3569 27 6 2.5381 -5.3282 -0.3091 28 6 1.8355 -4.2768 -0.8673 29 6 2.3200 -2.9867 -0.7587 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6768 1.9563 0.8899 37 1 0.4428 -0.0224 2.5156 38 1 1.8733 1.0367 2.4846 39 1 1.9637 0.9414 5.0412 40 1 0.4449 0.0336 4.8470 41 1 1.0007 0.2885 7.4719 42 1 0.4788 0.4573 10.7642 43 1 3.8887 -1.1843 4.5872 44 1 3.8892 0.3570 3.6961 45 1 3.6919 -2.4283 2.4619 46 1 5.1226 -1.3697 2.4304 47 1 3.7196 -0.7610 -0.8407 48 1 5.1247 -1.3653 0.0696 49 1 5.1430 -3.6145 0.9774 50 1 4.2749 -5.9113 0.7927 51 1 2.1593 -6.3361 -0.3937 52 1 0.9078 -4.4632 -1.3880 53 1 1.7713 -2.1652 -1.1951 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528636952.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:10 Heat of formation + Delta-G solvation = -14.537270 kcal Electronic energy + Delta-G solvation = -31733.376485 eV Core-core repulsion = 27797.043895 eV Total energy + Delta-G solvation = -3936.332590 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.55984 -40.27305 -39.31388 -36.92694 -35.85877 -35.76337 -33.29984 -32.43850 -31.78263 -30.53708 -29.86224 -27.97817 -27.48985 -26.07281 -25.33726 -24.18113 -23.27254 -22.16274 -21.87776 -20.95941 -19.87934 -19.53890 -17.95478 -17.59039 -17.02083 -16.82784 -16.54261 -16.25201 -16.14957 -16.13581 -15.83074 -15.64455 -15.33488 -15.08425 -14.71160 -14.65954 -14.23752 -14.06220 -13.94155 -13.64531 -13.51257 -13.41895 -13.33086 -13.02880 -13.00298 -12.70478 -12.52999 -12.51840 -12.43708 -12.21119 -12.13509 -12.03490 -11.94043 -11.83792 -11.62028 -11.48528 -11.35401 -11.05728 -10.24488 -9.99913 -9.78198 -9.66167 -9.30958 -9.13543 -8.46212 -5.94900 0.43536 0.51087 1.39117 1.40621 1.51691 2.05456 2.28088 2.75528 2.79760 3.05500 3.20338 3.38773 3.74885 3.88262 3.94718 3.97703 4.09244 4.13754 4.23568 4.27629 4.29447 4.31574 4.37451 4.41202 4.48285 4.50327 4.57631 4.61027 4.64025 4.68628 4.76393 4.81885 4.89938 4.93235 4.98736 5.06128 5.12730 5.14196 5.15391 5.17255 5.26827 5.31678 5.40590 5.51375 5.57567 5.61007 5.63700 5.65493 5.85495 6.03199 6.04499 6.13303 6.20567 6.27783 6.61245 7.13169 7.56667 8.12810 8.71127 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.013098 B = 0.002790 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.281324 B =10032.684102 C =11197.330329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.085 4.085 3 C -0.137 4.137 4 C 0.097 3.903 5 H 0.036 0.964 6 C 0.060 3.940 7 N -0.535 5.535 8 C 0.059 3.941 9 C 0.443 3.557 10 O -0.613 6.613 11 N -0.574 5.574 12 C -0.333 4.333 13 H 0.078 0.922 14 C -0.013 4.013 15 N -0.921 5.921 16 Si 0.992 3.008 17 H -0.272 1.272 18 H -0.270 1.270 19 H -0.272 1.272 20 C 0.061 3.939 21 C 0.068 3.932 22 N -0.515 5.515 23 C 0.091 3.909 24 C -0.126 4.126 25 C -0.122 4.122 26 C -0.136 4.136 27 C -0.132 4.132 28 C -0.131 4.131 29 C -0.118 4.118 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.047 0.953 37 H 0.084 0.916 38 H 0.049 0.951 39 H 0.064 0.936 40 H 0.107 0.893 41 H 0.395 0.605 42 H 0.278 0.722 43 H 0.064 0.936 44 H 0.033 0.967 45 H 0.028 0.972 46 H 0.087 0.913 47 H 0.102 0.898 48 H 0.089 0.911 49 H 0.121 0.879 50 H 0.128 0.872 51 H 0.135 0.865 52 H 0.139 0.861 53 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.780 0.295 -25.158 25.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.104 4.104 3 C -0.194 4.194 4 C -0.012 4.012 5 H 0.054 0.946 6 C -0.067 4.067 7 N -0.260 5.260 8 C -0.072 4.072 9 C 0.230 3.770 10 O -0.499 6.499 11 N -0.211 5.211 12 C -0.462 4.462 13 H 0.096 0.904 14 C -0.212 4.212 15 N -0.562 5.562 16 Si 0.816 3.184 17 H -0.197 1.197 18 H -0.194 1.194 19 H -0.198 1.198 20 C -0.067 4.067 21 C -0.060 4.060 22 N -0.238 5.238 23 C -0.036 4.036 24 C -0.127 4.127 25 C -0.141 4.141 26 C -0.154 4.154 27 C -0.150 4.150 28 C -0.148 4.148 29 C -0.136 4.136 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.102 0.898 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.125 0.875 41 H 0.229 0.771 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.052 0.948 45 H 0.046 0.954 46 H 0.105 0.895 47 H 0.121 0.879 48 H 0.107 0.893 49 H 0.139 0.861 50 H 0.146 0.854 51 H 0.153 0.847 52 H 0.157 0.843 53 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.136 -0.250 -25.064 25.156 hybrid contribution -0.083 -0.349 1.443 1.487 sum 2.053 -0.598 -23.621 23.717 Atomic orbital electron populations 1.21898 0.94357 1.01869 1.02581 1.21240 0.96017 0.97045 0.96064 1.21759 1.01624 0.94696 1.01360 1.21647 0.87109 0.97813 0.94632 0.94615 1.22412 0.99836 0.96219 0.88233 1.61697 1.08381 1.54777 1.01098 1.21693 1.01877 0.95095 0.88541 1.20723 0.83735 0.87926 0.84618 1.90456 1.45109 1.28590 1.85765 1.41923 1.50090 1.23925 1.05209 1.19615 1.34446 1.06192 0.85957 0.90378 1.26026 0.96249 0.97939 1.01008 1.69670 1.38087 1.23520 1.24948 0.85006 0.78641 0.78000 0.76797 1.19685 1.19423 1.19772 1.22147 0.87220 0.98725 0.98641 1.22025 0.99457 0.95680 0.88841 1.62618 1.07818 1.51875 1.01472 1.21368 1.00284 0.88502 0.93457 1.20763 0.96259 0.97144 0.98583 1.21259 1.00332 0.93019 0.99513 1.21400 0.97167 0.97306 0.99558 1.21432 0.95317 1.00134 0.98105 1.21444 1.00466 0.92882 1.00057 1.21432 0.95739 0.97529 0.98905 0.92676 0.90944 0.93019 0.89723 0.92172 0.91999 0.93425 0.89789 0.93331 0.91817 0.87517 0.77097 0.91307 0.91717 0.94837 0.95371 0.89481 0.87948 0.89305 0.86139 0.85371 0.84740 0.84348 0.84442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.84 71.98 0.64 -1.59 16 2 C -0.08 -1.37 1.78 -10.79 -0.02 -1.39 16 3 C -0.14 -2.14 8.68 71.98 0.63 -1.51 16 4 C 0.10 2.21 1.16 44.92 0.05 2.26 16 5 H 0.04 1.00 6.27 -2.39 -0.01 0.98 16 6 C 0.06 1.59 4.18 86.31 0.36 1.95 16 7 N -0.53 -18.58 4.45 -900.31 -4.00 -22.58 16 8 C 0.06 2.18 5.45 85.56 0.47 2.65 16 9 C 0.44 21.77 7.48 87.65 0.66 22.42 16 10 O -0.61 -34.67 13.90 -3.06 -0.04 -34.71 16 11 N -0.57 -30.19 5.29 -306.99 -1.62 -31.82 16 12 C -0.33 -19.22 9.68 84.04 0.81 -18.41 16 13 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 14 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 15 N -0.92 -50.43 13.05 21.66 0.28 -50.15 16 16 Si 0.99 43.56 29.55 68.60 2.03 45.59 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 18 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 C 0.06 2.11 5.26 86.31 0.45 2.57 16 21 C 0.07 1.95 5.08 86.31 0.44 2.39 16 22 N -0.52 -11.70 3.97 -875.03 -3.47 -15.17 16 23 C 0.09 1.67 5.17 85.56 0.44 2.11 16 24 C -0.13 -2.61 4.01 -19.86 -0.08 -2.69 16 25 C -0.12 -2.76 8.07 22.27 0.18 -2.58 16 26 C -0.14 -2.99 10.05 22.27 0.22 -2.76 16 27 C -0.13 -2.65 10.05 22.27 0.22 -2.43 16 28 C -0.13 -2.48 10.05 22.27 0.22 -2.26 16 29 C -0.12 -2.26 7.83 22.27 0.17 -2.08 16 30 H 0.05 0.88 6.47 -2.39 -0.02 0.87 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 1.20 4.08 -2.39 -0.01 1.19 16 34 H 0.06 1.02 7.61 -2.39 -0.02 1.01 16 35 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 36 H 0.05 0.83 6.39 -2.39 -0.02 0.81 16 37 H 0.08 2.07 6.46 -2.39 -0.02 2.06 16 38 H 0.05 1.23 6.35 -2.39 -0.02 1.21 16 39 H 0.06 2.14 8.12 -2.39 -0.02 2.12 16 40 H 0.11 3.49 8.03 -2.38 -0.02 3.47 16 41 H 0.40 19.79 7.90 -92.71 -0.73 19.06 16 42 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 43 H 0.06 2.79 5.84 -2.39 -0.01 2.77 16 44 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.03 0.93 6.39 -2.39 -0.02 0.92 16 46 H 0.09 2.20 8.11 -2.39 -0.02 2.18 16 47 H 0.10 1.53 6.32 -2.39 -0.02 1.52 16 48 H 0.09 1.50 8.04 -2.38 -0.02 1.48 16 49 H 0.12 2.55 8.05 -2.91 -0.02 2.52 16 50 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 51 H 0.13 2.15 8.06 -2.91 -0.02 2.12 16 52 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 53 H 0.14 2.14 5.39 -2.91 -0.02 2.12 16 Total: -1.00 -68.23 397.88 -0.31 -68.54 By element: Atomic # 1 Polarization: 41.69 SS G_CDS: 0.18 Total: 41.88 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: 6.34 Total: -1.57 kcal Atomic # 7 Polarization: -110.90 SS G_CDS: -8.82 Total: -119.72 kcal Atomic # 8 Polarization: -34.67 SS G_CDS: -0.04 Total: -34.71 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -68.23 -0.31 -68.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528636952.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.002 kcal (2) G-P(sol) polarization free energy of solvation -68.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds