Wall clock time and date at job start Wed Apr 1 2020 03:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47026 * 2 1 4 4 C 1.53003 * 109.46670 * 119.99568 * 2 1 3 5 5 H 1.09001 * 109.50411 * 183.33724 * 4 2 1 6 6 C 1.53043 * 109.49147 * 303.39151 * 4 2 1 7 7 N 1.46960 * 109.36377 * 178.37134 * 6 4 2 8 8 C 1.46906 * 111.00119 * 176.81151 * 7 6 4 9 9 C 1.50699 * 109.46959 * 189.84449 * 8 7 6 10 10 O 1.21291 * 120.00540 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99760 * 179.97438 * 9 8 7 12 12 C 1.37092 * 120.00238 * 179.97438 * 11 9 8 13 13 H 1.08006 * 120.00090 * 359.97438 * 12 11 9 14 14 C 1.38953 * 120.00550 * 179.97438 * 12 11 9 15 15 N 1.31411 * 119.99547 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00313 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46960 * 90.00441 * 16 14 12 18 18 H 1.48502 * 109.47369 * 210.00164 * 16 14 12 19 19 H 1.48497 * 109.47395 * 330.00603 * 16 14 12 20 20 C 1.46957 * 110.87991 * 300.67894 * 7 6 4 21 21 C 1.53052 * 109.36362 * 59.32017 * 20 7 6 22 22 N 1.46957 * 109.48616 * 63.28705 * 4 2 1 23 23 C 1.46897 * 111.00428 * 56.84017 * 22 4 2 24 24 C 1.50699 * 109.47122 * 59.12119 * 23 22 4 25 25 C 1.38235 * 120.00594 * 268.99103 * 24 23 22 26 26 C 1.38234 * 120.00339 * 179.81296 * 25 24 23 27 27 C 1.38230 * 120.00031 * 0.41155 * 26 25 24 28 28 C 1.38241 * 119.99936 * 359.81588 * 27 26 25 29 29 C 1.38234 * 119.99872 * 0.02562 * 28 27 26 30 30 H 1.09004 * 109.47458 * 300.00334 * 1 2 3 31 31 H 1.09003 * 109.46850 * 59.99742 * 1 2 3 32 32 H 1.08993 * 109.47269 * 180.02562 * 1 2 3 33 33 H 1.08989 * 109.47091 * 239.99946 * 2 1 3 34 34 H 1.08997 * 109.47111 * 294.60825 * 3 2 1 35 35 H 1.09004 * 109.47207 * 54.61092 * 3 2 1 36 36 H 1.08996 * 109.46699 * 174.60554 * 3 2 1 37 37 H 1.08998 * 109.49283 * 58.40007 * 6 4 2 38 38 H 1.09006 * 109.49223 * 298.33322 * 6 4 2 39 39 H 1.08995 * 109.46853 * 69.84019 * 8 7 6 40 40 H 1.09002 * 109.46835 * 309.84794 * 8 7 6 41 41 H 0.97006 * 120.00224 * 0.02562 * 11 9 8 42 42 H 0.96998 * 120.00259 * 179.97438 * 15 14 12 43 43 H 1.08997 * 109.48984 * 179.28866 * 20 7 6 44 44 H 1.09001 * 109.48884 * 299.35434 * 20 7 6 45 45 H 1.08997 * 109.48517 * 61.56755 * 21 20 7 46 46 H 1.09002 * 109.48947 * 181.61061 * 21 20 7 47 47 H 1.08992 * 109.47053 * 179.12480 * 23 22 4 48 48 H 1.08997 * 109.46709 * 299.12858 * 23 22 4 49 49 H 1.08007 * 119.99342 * 359.97438 * 25 24 23 50 50 H 1.08006 * 119.99940 * 180.21007 * 26 25 24 51 51 H 1.08001 * 120.00536 * 179.79299 * 27 26 25 52 52 H 1.07994 * 120.00000 * 179.97438 * 28 27 26 53 53 H 1.08004 * 119.99800 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 3.1283 -0.6700 1.2804 6 6 1.4615 -0.0509 2.4977 7 7 1.9216 -0.7696 3.6941 8 6 1.4483 -0.1105 4.9188 9 6 2.1302 -0.7234 6.1147 10 8 2.9321 -1.6206 5.9621 11 7 1.8499 -0.2739 7.3540 12 6 2.4698 -0.8317 8.4421 13 1 3.1826 -1.6317 8.3063 14 6 2.1813 -0.3679 9.7198 15 7 1.3137 0.6052 9.8851 16 14 3.0255 -1.1285 11.2024 17 1 4.2827 -0.3916 11.4881 18 1 2.1252 -1.0469 12.3806 19 1 3.3397 -2.5515 10.9171 20 6 1.4978 -2.1762 3.6556 21 6 2.0763 -2.8465 2.4071 22 7 1.6161 -2.1278 1.2107 23 6 2.0894 -2.7869 -0.0138 24 6 3.5935 -2.7153 -0.0736 25 6 4.2105 -1.6528 -0.7072 26 6 5.5902 -1.5853 -0.7586 27 6 6.3530 -2.5845 -0.1838 28 6 5.7361 -3.6494 0.4458 29 6 4.3564 -3.7153 0.5001 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.7577 1.9277 -0.9343 35 1 1.6000 1.9835 0.8378 36 1 3.1257 1.4440 0.0966 37 1 0.3727 -0.0779 2.4536 38 1 1.7983 0.9847 2.5437 39 1 0.3700 -0.2418 5.0084 40 1 1.6821 0.9531 4.8725 41 1 1.2089 0.4439 7.4762 42 1 1.1119 0.9287 10.7770 43 1 1.8611 -2.6900 4.5456 44 1 0.4095 -2.2274 3.6246 45 1 3.1650 -2.8194 2.4514 46 1 1.7398 -3.8822 2.3615 47 1 1.7752 -3.8305 -0.0094 48 1 1.6670 -2.2838 -0.8836 49 1 3.6143 -0.8742 -1.1599 50 1 6.0721 -0.7534 -1.2507 51 1 7.4309 -2.5335 -0.2268 52 1 6.3321 -4.4303 0.8946 53 1 3.8744 -4.5475 0.9916 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528636956.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:14 Heat of formation + Delta-G solvation = -15.663823 kcal Electronic energy + Delta-G solvation = -31724.777180 eV Core-core repulsion = 27788.395739 eV Total energy + Delta-G solvation = -3936.381441 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.54756 -40.27081 -39.31925 -36.92295 -35.86238 -35.76626 -33.30088 -32.43256 -31.78162 -30.54744 -29.85176 -27.97020 -27.50805 -26.06879 -25.33350 -24.18345 -23.27343 -22.16342 -21.85813 -20.95668 -19.88033 -19.55451 -17.94297 -17.58047 -17.03453 -16.83165 -16.54479 -16.23172 -16.15365 -16.13238 -15.82277 -15.65026 -15.34090 -15.09243 -14.70469 -14.65121 -14.25179 -14.04564 -13.94590 -13.62832 -13.52503 -13.41975 -13.35180 -13.02751 -13.00629 -12.72215 -12.51742 -12.50420 -12.42224 -12.21721 -12.13334 -12.05008 -11.93823 -11.82988 -11.64341 -11.49033 -11.35871 -11.06711 -10.24411 -9.99846 -9.78086 -9.66225 -9.30972 -9.13397 -8.46410 -5.94931 0.43553 0.51131 1.37254 1.40702 1.53512 2.05339 2.28042 2.75557 2.79841 3.05418 3.20279 3.38728 3.75671 3.88460 3.94688 3.97475 4.08964 4.14001 4.24155 4.27521 4.29830 4.31721 4.36855 4.41265 4.48505 4.50602 4.57806 4.60618 4.63795 4.69163 4.75689 4.81268 4.90244 4.92911 4.98959 5.06589 5.12899 5.14277 5.15439 5.16807 5.26109 5.31930 5.40774 5.51060 5.57248 5.60221 5.63328 5.65525 5.85537 6.03258 6.04405 6.13296 6.20617 6.27809 6.61164 7.13283 7.56652 8.12799 8.71174 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.012997 B = 0.002799 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.838598 B =10002.908002 C =11192.673777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.084 4.084 3 C -0.148 4.148 4 C 0.097 3.903 5 H 0.036 0.964 6 C 0.061 3.939 7 N -0.535 5.535 8 C 0.059 3.941 9 C 0.443 3.557 10 O -0.613 6.613 11 N -0.574 5.574 12 C -0.331 4.331 13 H 0.078 0.922 14 C -0.013 4.013 15 N -0.921 5.921 16 Si 0.992 3.008 17 H -0.271 1.271 18 H -0.270 1.270 19 H -0.273 1.273 20 C 0.061 3.939 21 C 0.068 3.932 22 N -0.516 5.516 23 C 0.091 3.909 24 C -0.126 4.126 25 C -0.116 4.116 26 C -0.131 4.131 27 C -0.132 4.132 28 C -0.136 4.136 29 C -0.122 4.122 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.049 0.951 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.107 0.893 41 H 0.395 0.605 42 H 0.277 0.723 43 H 0.064 0.936 44 H 0.033 0.967 45 H 0.029 0.971 46 H 0.087 0.913 47 H 0.089 0.911 48 H 0.103 0.897 49 H 0.137 0.863 50 H 0.139 0.861 51 H 0.135 0.865 52 H 0.128 0.872 53 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.107 -1.167 -25.185 25.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.103 4.103 3 C -0.206 4.206 4 C -0.012 4.012 5 H 0.054 0.946 6 C -0.067 4.067 7 N -0.260 5.260 8 C -0.072 4.072 9 C 0.230 3.770 10 O -0.499 6.499 11 N -0.212 5.212 12 C -0.461 4.461 13 H 0.096 0.904 14 C -0.212 4.212 15 N -0.562 5.562 16 Si 0.816 3.184 17 H -0.197 1.197 18 H -0.195 1.195 19 H -0.198 1.198 20 C -0.067 4.067 21 C -0.060 4.060 22 N -0.238 5.238 23 C -0.036 4.036 24 C -0.128 4.128 25 C -0.135 4.135 26 C -0.149 4.149 27 C -0.150 4.150 28 C -0.154 4.154 29 C -0.141 4.141 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.101 0.899 39 H 0.082 0.918 40 H 0.125 0.875 41 H 0.229 0.771 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.052 0.948 45 H 0.047 0.953 46 H 0.105 0.895 47 H 0.107 0.893 48 H 0.121 0.879 49 H 0.154 0.846 50 H 0.156 0.844 51 H 0.153 0.847 52 H 0.146 0.854 53 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.308 -1.671 -25.092 25.149 hybrid contribution 0.317 -0.041 1.457 1.492 sum 0.625 -1.712 -23.635 23.705 Atomic orbital electron populations 1.21772 0.94121 1.02195 1.01432 1.21220 0.96989 0.96001 0.96081 1.21884 1.00791 0.95332 1.02606 1.21663 0.97135 0.87755 0.94640 0.94629 1.22406 0.98452 0.97619 0.88209 1.61698 1.60649 1.02547 1.01068 1.21694 0.97476 0.99560 0.88474 1.20725 0.85769 0.85818 0.84678 1.90457 1.39284 1.34162 1.86016 1.41927 1.39778 1.34600 1.04862 1.19644 1.22854 1.18075 0.85529 0.90407 1.26024 0.97393 0.96763 1.01069 1.69673 1.34093 1.27583 1.24870 0.84943 0.78069 0.78403 0.77013 1.19684 1.19473 1.19787 1.22149 0.97016 0.88972 0.98600 1.22031 0.97632 0.97535 0.88812 1.62617 1.57645 1.02045 1.01508 1.21374 0.87837 1.00914 0.93519 1.20764 0.98000 0.95327 0.98664 1.21387 0.95073 0.97916 0.99105 1.21443 0.94240 0.99223 0.99951 1.21433 1.00842 0.94529 0.98182 1.21400 0.95060 0.99259 0.99721 1.21258 0.94334 0.99092 0.99416 0.93330 0.91962 0.92270 0.89731 0.90939 0.92678 0.93120 0.93244 0.89880 0.91813 0.87515 0.77095 0.91319 0.91731 0.94839 0.95311 0.89510 0.89280 0.87918 0.84556 0.84355 0.84743 0.85378 0.86142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.63 71.98 0.62 -1.53 16 2 C -0.08 -1.36 1.83 -10.79 -0.02 -1.38 16 3 C -0.15 -2.20 8.77 71.98 0.63 -1.57 16 4 C 0.10 2.20 1.13 44.92 0.05 2.26 16 5 H 0.04 0.99 6.33 -2.39 -0.02 0.98 16 6 C 0.06 1.59 4.18 86.31 0.36 1.95 16 7 N -0.53 -18.58 4.45 -900.27 -4.00 -22.58 16 8 C 0.06 2.18 5.45 85.56 0.47 2.65 16 9 C 0.44 21.78 7.48 87.66 0.66 22.43 16 10 O -0.61 -34.69 13.90 -3.06 -0.04 -34.73 16 11 N -0.57 -30.20 5.29 -306.98 -1.62 -31.82 16 12 C -0.33 -19.16 9.68 84.04 0.81 -18.35 16 13 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 14 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 15 N -0.92 -50.39 13.05 21.66 0.28 -50.11 16 16 Si 0.99 43.58 29.55 68.60 2.03 45.61 16 17 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 18 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 20 C 0.06 2.11 5.26 86.31 0.45 2.57 16 21 C 0.07 1.95 4.98 86.31 0.43 2.38 16 22 N -0.52 -11.71 4.11 -875.05 -3.60 -15.31 16 23 C 0.09 1.66 5.18 85.56 0.44 2.10 16 24 C -0.13 -2.61 4.02 -19.87 -0.08 -2.69 16 25 C -0.12 -2.24 7.90 22.27 0.18 -2.06 16 26 C -0.13 -2.49 10.05 22.27 0.22 -2.27 16 27 C -0.13 -2.66 10.05 22.27 0.22 -2.44 16 28 C -0.14 -3.00 10.05 22.27 0.22 -2.77 16 29 C -0.12 -2.76 7.98 22.27 0.18 -2.58 16 30 H 0.05 0.84 6.33 -2.39 -0.02 0.82 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 1.02 7.70 -2.39 -0.02 1.00 16 33 H 0.08 1.20 4.18 -2.39 -0.01 1.19 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.05 0.87 6.84 -2.38 -0.02 0.85 16 36 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.05 1.25 6.28 -2.39 -0.01 1.23 16 38 H 0.08 2.05 6.66 -2.38 -0.02 2.04 16 39 H 0.06 2.14 8.12 -2.39 -0.02 2.12 16 40 H 0.11 3.49 8.03 -2.39 -0.02 3.47 16 41 H 0.40 19.78 7.90 -92.70 -0.73 19.05 16 42 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 43 H 0.06 2.78 5.84 -2.39 -0.01 2.77 16 44 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.03 0.95 6.32 -2.39 -0.02 0.94 16 46 H 0.09 2.20 8.12 -2.39 -0.02 2.18 16 47 H 0.09 1.50 8.07 -2.39 -0.02 1.48 16 48 H 0.10 1.53 6.16 -2.39 -0.01 1.52 16 49 H 0.14 2.12 5.66 -2.91 -0.02 2.10 16 50 H 0.14 1.99 8.06 -2.91 -0.02 1.96 16 51 H 0.13 2.15 8.06 -2.91 -0.02 2.13 16 52 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 53 H 0.12 2.56 7.99 -2.91 -0.02 2.53 16 Total: -1.00 -68.29 398.51 -0.46 -68.74 By element: Atomic # 1 Polarization: 41.56 SS G_CDS: 0.18 Total: 41.74 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: 6.32 Total: -1.53 kcal Atomic # 7 Polarization: -110.88 SS G_CDS: -8.94 Total: -119.83 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -0.04 Total: -34.73 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -68.29 -0.46 -68.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528636956.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.081 kcal (2) G-P(sol) polarization free energy of solvation -68.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds