Wall clock time and date at job start Wed Apr 1 2020 03:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47269 * 2 1 4 4 C 1.53002 * 109.47194 * 120.00306 * 2 1 3 5 5 H 1.09001 * 109.51406 * 59.85446 * 4 2 1 6 6 C 1.53236 * 109.49209 * 299.78936 * 4 2 1 7 7 N 1.47077 * 108.52029 * 186.21188 * 6 4 2 8 8 C 1.34779 * 120.88240 * 231.15999 * 7 6 4 9 9 O 1.21589 * 119.99815 * 355.02459 * 8 7 6 10 10 N 1.34768 * 120.00409 * 175.02004 * 8 7 6 11 11 C 1.46499 * 120.00618 * 184.50133 * 10 8 7 12 12 C 1.50696 * 109.47453 * 180.02562 * 11 10 8 13 13 C 1.38632 * 119.75170 * 269.72705 * 12 11 10 14 14 C 1.37610 * 120.25008 * 179.72284 * 13 12 11 15 15 C 1.40715 * 119.74533 * 0.56881 * 14 13 12 16 16 C 1.41393 * 120.24697 * 179.68085 * 15 14 13 17 17 H 1.08005 * 120.00204 * 214.09905 * 16 15 14 18 18 C 1.39946 * 120.00099 * 34.09704 * 16 15 14 19 19 N 1.30826 * 120.00004 * 357.12517 * 18 16 15 20 20 Si 1.86801 * 120.00411 * 177.12604 * 18 16 15 21 21 H 1.48505 * 109.46726 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47103 * 120.00001 * 20 18 16 23 23 H 1.48496 * 109.46978 * 240.00014 * 20 18 16 24 24 C 1.40716 * 119.50872 * 359.70851 * 15 14 13 25 25 C 1.37613 * 119.74645 * 359.97438 * 24 15 14 26 26 C 1.47083 * 118.23816 * 51.18313 * 7 6 4 27 27 C 1.53236 * 108.52104 * 308.81715 * 26 7 6 28 28 N 1.46894 * 109.36123 * 53.81625 * 27 26 7 29 29 C 1.46907 * 110.99832 * 172.76027 * 28 27 26 30 30 H 1.08998 * 109.46774 * 305.39059 * 1 2 3 31 31 H 1.08996 * 109.47199 * 65.38713 * 1 2 3 32 32 H 1.08997 * 109.46896 * 185.39637 * 1 2 3 33 33 H 1.09003 * 109.46786 * 239.99810 * 2 1 3 34 34 H 1.08998 * 109.46877 * 180.02562 * 3 2 1 35 35 H 1.08995 * 109.47054 * 300.00375 * 3 2 1 36 36 H 1.08997 * 109.46966 * 60.00299 * 3 2 1 37 37 H 1.09003 * 109.63115 * 66.49929 * 6 4 2 38 38 H 1.09004 * 109.62946 * 305.92071 * 6 4 2 39 39 H 0.97001 * 119.99849 * 4.50259 * 10 8 7 40 40 H 1.09001 * 109.47055 * 300.00403 * 11 10 8 41 41 H 1.09002 * 109.46757 * 60.00076 * 11 10 8 42 42 H 1.08004 * 119.87095 * 359.97438 * 13 12 11 43 43 H 1.08008 * 120.13230 * 180.27772 * 14 13 12 44 44 H 0.96998 * 120.00433 * 180.02562 * 19 18 16 45 45 H 1.08002 * 120.12607 * 179.97438 * 24 15 14 46 46 H 1.08001 * 119.87460 * 180.02562 * 25 24 15 47 47 H 1.08998 * 109.62650 * 189.10482 * 26 7 6 48 48 H 1.09001 * 109.78667 * 68.62321 * 26 7 6 49 49 H 1.08999 * 109.49246 * 173.79414 * 27 26 7 50 50 H 1.09005 * 109.49026 * 293.83936 * 27 26 7 51 51 H 1.09007 * 109.46857 * 62.44390 * 29 28 27 52 52 H 1.09000 * 109.47205 * 182.43855 * 29 28 27 53 53 H 1.08992 * 109.47271 * 302.44474 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6750 -1.7484 1.2512 6 6 1.5339 0.0037 2.5007 7 7 2.1554 -0.6141 3.6820 8 6 1.4053 -1.0206 4.7254 9 8 0.2102 -0.7975 4.7384 10 7 1.9800 -1.6746 5.7542 11 6 1.1515 -2.2030 6.8407 12 6 2.0310 -2.8838 7.8576 13 6 2.3108 -4.2356 7.7300 14 6 3.1173 -4.8663 8.6495 15 6 3.6488 -4.1366 9.7288 16 6 4.4731 -4.7755 10.6835 17 1 4.4404 -4.4672 11.7180 18 6 5.3316 -5.8076 10.2878 19 7 5.3307 -6.2193 9.0460 20 14 6.4787 -6.5974 11.5327 21 1 6.2869 -5.9565 12.8586 22 1 6.1748 -8.0472 11.6356 23 1 7.8857 -6.4164 11.0937 24 6 3.3533 -2.7662 9.8514 25 6 2.5498 -2.1547 8.9164 26 6 3.6172 -0.7760 3.6946 27 6 4.0413 -1.4702 2.3961 28 7 3.5090 -0.7237 1.2484 29 6 4.0344 -1.2566 -0.0157 30 1 -0.3633 0.5952 0.8378 31 1 -0.3633 0.4280 -0.9343 32 1 -0.3633 -1.0231 0.0966 33 1 1.8933 -0.5139 -0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6768 1.9563 0.8900 37 1 0.4499 -0.0911 2.5656 38 1 1.8098 1.0570 2.4505 39 1 2.9422 -1.7954 5.7753 40 1 0.6120 -1.3845 7.3173 41 1 0.4384 -2.9219 6.4372 42 1 1.8975 -4.7948 6.9036 43 1 3.3377 -5.9186 8.5458 44 1 5.9253 -6.9348 8.7718 45 1 3.7555 -2.1966 10.6761 46 1 2.3220 -1.1030 9.0083 47 1 3.9106 -1.3862 4.5488 48 1 4.0961 0.2010 3.7609 49 1 5.1294 -1.4996 2.3379 50 1 3.6488 -2.4871 2.3823 51 1 3.7107 -2.2905 -0.1366 52 1 3.6586 -0.6589 -0.8462 53 1 5.1235 -1.2161 -0.0024 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563042969.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:28 Heat of formation + Delta-G solvation = -17.528368 kcal Electronic energy + Delta-G solvation = -30570.475449 eV Core-core repulsion = 26634.013155 eV Total energy + Delta-G solvation = -3936.462294 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.65450 -40.04757 -39.37667 -36.51058 -36.32922 -35.27208 -35.00898 -32.10115 -31.20348 -30.88063 -29.64351 -28.25200 -27.94110 -25.79940 -25.29377 -24.78522 -22.89934 -22.82794 -21.86842 -20.99630 -19.85685 -19.32745 -19.22693 -17.63681 -17.19993 -16.71375 -16.55150 -16.25422 -16.19921 -15.76090 -15.65992 -15.56778 -15.48786 -14.94992 -14.68635 -14.67413 -14.20608 -14.08279 -13.83591 -13.69727 -13.63371 -13.45008 -13.33894 -12.97942 -12.84931 -12.80827 -12.72360 -12.55963 -12.54531 -12.44395 -12.06067 -12.04614 -11.80467 -11.56917 -11.53329 -11.45217 -11.31200 -11.21444 -11.05091 -10.22078 -9.63349 -9.40403 -9.25364 -9.17835 -8.53455 -6.41725 0.79340 1.11808 1.39758 1.42984 1.53835 1.73381 2.08775 2.22512 2.72040 2.83996 3.03124 3.68020 3.70802 3.77660 3.91076 4.06951 4.09805 4.14912 4.22059 4.30542 4.31112 4.39770 4.49707 4.54734 4.61401 4.64302 4.66405 4.71103 4.73409 4.80016 4.80951 4.86387 4.98871 5.04591 5.04668 5.07111 5.17408 5.17517 5.23779 5.33538 5.40477 5.44458 5.46475 5.52391 5.56446 5.70245 5.80970 5.91930 6.00512 6.08882 6.11430 6.18872 6.37002 6.69784 6.92901 6.95012 7.00699 7.50723 8.39133 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.017592 B = 0.002181 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.288558 B =12836.053783 C =13834.175527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.084 4.084 3 C -0.137 4.137 4 C 0.082 3.918 5 H 0.024 0.976 6 C 0.138 3.862 7 N -0.632 5.632 8 C 0.700 3.300 9 O -0.635 6.635 10 N -0.731 5.731 11 C 0.210 3.790 12 C -0.212 4.212 13 C -0.088 4.088 14 C -0.177 4.177 15 C 0.080 3.920 16 C -0.497 4.497 17 H 0.074 0.926 18 C 0.029 3.971 19 N -0.837 5.837 20 Si 0.986 3.014 21 H -0.260 1.260 22 H -0.267 1.267 23 H -0.267 1.267 24 C -0.228 4.228 25 C -0.075 4.075 26 C 0.113 3.887 27 C 0.044 3.956 28 N -0.533 5.533 29 C 0.021 3.979 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.049 0.951 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.402 0.598 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.284 0.716 45 H 0.101 0.899 46 H 0.117 0.883 47 H 0.083 0.917 48 H 0.090 0.910 49 H 0.109 0.891 50 H 0.024 0.976 51 H 0.019 0.981 52 H 0.086 0.914 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.126 10.304 -19.136 21.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.103 4.103 3 C -0.194 4.194 4 C -0.028 4.028 5 H 0.042 0.958 6 C 0.015 3.985 7 N -0.369 5.369 8 C 0.402 3.598 9 O -0.518 6.518 10 N -0.387 5.387 11 C 0.087 3.913 12 C -0.214 4.214 13 C -0.107 4.107 14 C -0.196 4.196 15 C 0.078 3.922 16 C -0.528 4.528 17 H 0.092 0.908 18 C -0.184 4.184 19 N -0.465 5.465 20 Si 0.807 3.193 21 H -0.183 1.183 22 H -0.192 1.192 23 H -0.192 1.192 24 C -0.248 4.248 25 C -0.094 4.094 26 C -0.010 4.010 27 C -0.085 4.085 28 N -0.258 5.258 29 C -0.127 4.127 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.240 0.760 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.121 0.879 43 H 0.127 0.873 44 H 0.095 0.905 45 H 0.119 0.881 46 H 0.135 0.865 47 H 0.101 0.899 48 H 0.108 0.892 49 H 0.127 0.873 50 H 0.043 0.957 51 H 0.037 0.963 52 H 0.104 0.896 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.722 10.757 -19.214 22.032 hybrid contribution 0.610 -1.675 0.696 1.913 sum -0.112 9.082 -18.519 20.626 Atomic orbital electron populations 1.21892 0.94734 1.01553 1.02618 1.21173 0.95692 0.97545 0.95880 1.21765 1.01877 0.94210 1.01554 1.21999 0.87994 0.97225 0.95543 0.95820 1.21751 0.97937 0.97054 0.81723 1.47419 1.07554 1.64483 1.17427 1.16077 0.84674 0.78515 0.80530 1.90841 1.15236 1.64356 1.81329 1.45589 1.11227 1.59503 1.22406 1.19624 0.90884 0.96039 0.84750 1.19263 1.08295 0.94106 0.99741 1.20800 0.97683 0.94322 0.97911 1.21495 0.99912 1.00079 0.98163 1.18055 0.89601 0.91595 0.92939 1.19856 1.20409 1.16284 0.96223 0.90790 1.26726 0.98651 0.95323 0.97668 1.69827 1.34181 1.24176 1.18276 0.85086 0.77527 0.78152 0.78498 1.18338 1.19198 1.19169 1.21296 1.06694 0.94508 1.02291 1.20699 0.96249 0.98448 0.93963 1.21887 0.78858 1.02218 0.98069 1.22484 1.01582 0.94359 0.90074 1.61977 1.06592 1.54014 1.03204 1.22514 1.01241 0.97601 0.91334 0.92899 0.90849 0.93518 0.89713 0.91613 0.92017 0.93161 0.90430 0.89942 0.76022 0.92211 0.92861 0.87897 0.87307 0.90493 0.88050 0.86550 0.89862 0.89193 0.87270 0.95735 0.96265 0.89565 0.90099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.70 71.98 0.63 -1.56 16 2 C -0.08 -1.18 2.20 -10.79 -0.02 -1.20 16 3 C -0.14 -1.74 8.57 71.98 0.62 -1.12 16 4 C 0.08 1.54 1.82 45.00 0.08 1.63 16 5 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 6 C 0.14 3.19 5.11 86.35 0.44 3.63 16 7 N -0.63 -16.62 3.01 -835.94 -2.52 -19.13 16 8 C 0.70 23.48 8.31 179.06 1.49 24.97 16 9 O -0.64 -25.80 15.83 -4.00 -0.06 -25.86 16 10 N -0.73 -23.67 5.46 -482.31 -2.64 -26.31 16 11 C 0.21 7.49 5.79 85.63 0.50 7.99 16 12 C -0.21 -8.52 5.27 -19.68 -0.10 -8.62 16 13 C -0.09 -3.90 9.67 22.22 0.21 -3.68 16 14 C -0.18 -9.00 8.67 22.73 0.20 -8.80 16 15 C 0.08 4.20 5.55 -21.29 -0.12 4.08 16 16 C -0.50 -26.21 9.05 23.46 0.21 -26.00 16 17 H 0.07 3.78 7.85 -2.91 -0.02 3.76 16 18 C 0.03 1.43 5.41 85.26 0.46 1.89 16 19 N -0.84 -42.80 10.61 21.83 0.23 -42.57 16 20 Si 0.99 37.82 29.56 68.60 2.03 39.84 16 21 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 22 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 23 H -0.27 -9.84 7.11 99.48 0.71 -9.14 16 24 C -0.23 -10.67 9.80 22.73 0.22 -10.45 16 25 C -0.07 -3.08 9.67 22.22 0.21 -2.86 16 26 C 0.11 2.30 6.60 86.35 0.57 2.87 16 27 C 0.04 0.78 5.62 86.38 0.49 1.27 16 28 N -0.53 -8.87 3.99 -896.09 -3.57 -12.44 16 29 C 0.02 0.26 8.89 127.69 1.14 1.40 16 30 H 0.05 0.86 6.89 -2.39 -0.02 0.84 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.08 1.04 6.28 -2.39 -0.01 1.02 16 34 H 0.06 0.87 7.23 -2.39 -0.02 0.85 16 35 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.05 0.72 6.30 -2.39 -0.02 0.70 16 37 H 0.08 2.10 5.90 -2.39 -0.01 2.08 16 38 H 0.08 1.75 6.14 -2.39 -0.01 1.74 16 39 H 0.40 12.03 5.96 -92.71 -0.55 11.48 16 40 H 0.06 2.13 8.08 -2.39 -0.02 2.11 16 41 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 42 H 0.10 4.17 8.06 -2.91 -0.02 4.15 16 43 H 0.11 5.90 6.14 -2.91 -0.02 5.88 16 44 H 0.28 13.20 8.30 -92.71 -0.77 12.43 16 45 H 0.10 4.48 8.06 -2.91 -0.02 4.45 16 46 H 0.12 4.15 8.06 -2.91 -0.02 4.13 16 47 H 0.08 1.73 5.63 -2.39 -0.01 1.71 16 48 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.11 1.52 8.09 -2.39 -0.02 1.50 16 50 H 0.02 0.52 8.14 -2.38 -0.02 0.50 16 51 H 0.02 0.27 8.14 -2.38 -0.02 0.25 16 52 H 0.09 0.91 5.78 -2.39 -0.01 0.89 16 53 H 0.08 0.86 8.11 -2.39 -0.02 0.84 16 Total: -1.00 -61.86 406.38 1.04 -60.82 By element: Atomic # 1 Polarization: 39.87 SS G_CDS: 0.36 Total: 40.22 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: 7.22 Total: -14.58 kcal Atomic # 7 Polarization: -91.96 SS G_CDS: -8.49 Total: -100.45 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.06 Total: -25.86 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 2.03 Total: 39.84 kcal Total: -61.86 1.04 -60.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563042969.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.293 kcal (2) G-P(sol) polarization free energy of solvation -61.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds