Wall clock time and date at job start Wed Apr 1 2020 03:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47097 * 2 1 4 4 C 1.52999 * 109.47328 * 120.00105 * 2 1 3 5 5 H 1.08993 * 109.51324 * 179.48455 * 4 2 1 6 6 C 1.53243 * 109.49112 * 299.55109 * 4 2 1 7 7 N 1.47079 * 108.51811 * 173.79035 * 6 4 2 8 8 C 1.34771 * 120.88271 * 128.82193 * 7 6 4 9 9 O 1.21590 * 119.99734 * 354.68070 * 8 7 6 10 10 N 1.34781 * 120.00185 * 174.68635 * 8 7 6 11 11 C 1.46497 * 119.99656 * 184.39796 * 10 8 7 12 12 C 1.50705 * 109.46855 * 179.97438 * 11 10 8 13 13 C 1.38635 * 119.74560 * 269.72565 * 12 11 10 14 14 C 1.37624 * 120.24210 * 179.76355 * 13 12 11 15 15 C 1.40716 * 119.74881 * 0.48593 * 14 13 12 16 16 C 1.41398 * 120.24655 * 179.79121 * 15 14 13 17 17 H 1.07998 * 119.99469 * 26.46248 * 16 15 14 18 18 C 1.39938 * 119.99806 * 206.46731 * 16 15 14 19 19 N 1.30827 * 120.00207 * 13.57638 * 18 16 15 20 20 Si 1.86806 * 120.00016 * 193.57261 * 18 16 15 21 21 H 1.48497 * 109.46729 * 59.99682 * 20 18 16 22 22 H 1.48494 * 109.47188 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.46906 * 299.99972 * 20 18 16 24 24 C 1.40713 * 119.50697 * 359.76725 * 15 14 13 25 25 C 1.37617 * 119.74932 * 0.02562 * 24 15 14 26 26 C 1.47082 * 118.23498 * 309.08552 * 7 6 4 27 27 C 1.52777 * 108.76772 * 50.85501 * 26 7 6 28 28 N 1.46901 * 109.42170 * 306.42088 * 27 26 7 29 29 C 1.46906 * 111.00088 * 187.10957 * 28 27 26 30 30 H 1.08999 * 109.46882 * 306.82496 * 1 2 3 31 31 H 1.09005 * 109.47183 * 66.82060 * 1 2 3 32 32 H 1.08992 * 109.47109 * 186.82496 * 1 2 3 33 33 H 1.09002 * 109.47076 * 240.00390 * 2 1 3 34 34 H 1.08998 * 109.47241 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47094 * 300.00464 * 3 2 1 36 36 H 1.08998 * 109.46900 * 59.99727 * 3 2 1 37 37 H 1.09000 * 109.62740 * 54.07897 * 6 4 2 38 38 H 1.08997 * 109.62671 * 293.50058 * 6 4 2 39 39 H 0.96991 * 119.99660 * 4.39125 * 10 8 7 40 40 H 1.09002 * 109.47319 * 60.00222 * 11 10 8 41 41 H 1.09004 * 109.47402 * 299.99527 * 11 10 8 42 42 H 1.07991 * 119.88065 * 359.97438 * 13 12 11 43 43 H 1.08000 * 120.12810 * 180.27887 * 14 13 12 44 44 H 0.97001 * 119.99875 * 180.02562 * 19 18 16 45 45 H 1.08005 * 120.12332 * 179.97438 * 24 15 14 46 46 H 1.08000 * 119.87901 * 180.02562 * 25 24 15 47 47 H 1.08998 * 109.62834 * 170.62512 * 26 7 6 48 48 H 1.09002 * 109.63145 * 291.20245 * 26 7 6 49 49 H 1.08997 * 109.56613 * 186.36643 * 27 26 7 50 50 H 1.09003 * 109.33897 * 66.33718 * 27 26 7 51 51 H 1.09003 * 109.46948 * 288.63093 * 29 28 27 52 52 H 1.08997 * 109.46420 * 48.62806 * 29 28 27 53 53 H 1.08998 * 109.46992 * 168.62864 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1300 -0.7297 1.2453 6 6 1.5388 0.0073 2.5007 7 7 1.9131 -0.7836 3.6830 8 6 2.5577 -0.2140 4.7205 9 8 2.9232 0.9433 4.6477 10 7 2.7973 -0.9274 5.8387 11 6 3.4111 -0.2819 7.0017 12 6 3.5690 -1.2902 8.1107 13 6 2.5514 -1.4589 9.0369 14 6 2.6827 -2.3802 10.0509 15 6 3.8595 -3.1450 10.1512 16 6 4.0074 -4.0914 11.1913 17 1 3.1344 -4.5459 11.6359 18 6 5.2849 -4.4389 11.6446 19 7 6.3190 -3.7123 11.3067 20 14 5.5137 -5.9402 12.7324 21 1 5.0478 -7.1508 12.0094 22 1 6.9510 -6.0895 13.0742 23 1 4.7238 -5.7734 13.9788 24 6 4.8879 -2.9615 9.2085 25 6 4.7331 -2.0375 8.2003 26 6 1.5705 -2.2139 3.7003 27 6 2.0653 -2.8536 2.4042 28 7 1.5391 -2.1022 1.2567 29 6 1.8528 -2.7828 -0.0068 30 1 -0.3633 0.6160 0.8226 31 1 -0.3634 0.4045 -0.9447 32 1 -0.3633 -1.0203 0.1221 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 0.4544 0.1082 2.4560 38 1 1.9991 0.9936 2.5592 39 1 2.5632 -1.8680 5.8733 40 1 2.7747 0.5350 7.3419 41 1 4.3897 0.1106 6.7252 42 1 1.6509 -0.8676 8.9606 43 1 1.8869 -2.5132 10.7688 44 1 7.2046 -3.9534 11.6207 45 1 5.7955 -3.5429 9.2763 46 1 5.5209 -1.8952 7.4754 47 1 2.0517 -2.6953 4.5517 48 1 0.4892 -2.3305 3.7732 49 1 1.7202 -3.8862 2.3519 50 1 3.1549 -2.8323 2.3841 51 1 2.9196 -2.6941 -0.2122 52 1 1.5842 -3.8363 0.0717 53 1 1.2872 -2.3230 -0.8172 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563042971.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:33 Heat of formation + Delta-G solvation = -19.702841 kcal Electronic energy + Delta-G solvation = -30440.230040 eV Core-core repulsion = 26503.673454 eV Total energy + Delta-G solvation = -3936.556586 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.64794 -40.03676 -39.36248 -36.50645 -36.34735 -35.26954 -35.03856 -32.11339 -31.18982 -30.89722 -29.64795 -28.25329 -27.92960 -25.79788 -25.26584 -24.78204 -22.90639 -22.82398 -21.86705 -20.98833 -19.86836 -19.30090 -19.23275 -17.62567 -17.21649 -16.68878 -16.51737 -16.26024 -16.19926 -15.77216 -15.65020 -15.58545 -15.48146 -14.93756 -14.69440 -14.63910 -14.23562 -14.10943 -13.83767 -13.67085 -13.58516 -13.44463 -13.27691 -12.97897 -12.88424 -12.83907 -12.74339 -12.58580 -12.52094 -12.34895 -12.16784 -12.04951 -11.78969 -11.55380 -11.52051 -11.46166 -11.30351 -11.17929 -11.04646 -10.21514 -9.62750 -9.40261 -9.27352 -9.24156 -8.63223 -6.38292 0.81167 1.13031 1.38936 1.45965 1.50857 1.74474 2.09577 2.20328 2.68348 2.84783 3.04645 3.70227 3.73892 3.79001 3.93212 4.09689 4.10847 4.16757 4.23259 4.31118 4.32244 4.38954 4.51358 4.55772 4.62877 4.64962 4.65995 4.71995 4.75167 4.81512 4.82315 4.86049 4.99703 5.04462 5.04498 5.07874 5.14979 5.18171 5.24174 5.34351 5.40676 5.42840 5.47182 5.53719 5.56961 5.68603 5.82370 5.93511 6.01526 6.08818 6.10170 6.20062 6.35909 6.67980 6.92035 6.95099 7.00781 7.52233 8.32220 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.020774 B = 0.002020 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.528372 B =13856.361926 C =14505.728560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.083 4.083 3 C -0.151 4.151 4 C 0.083 3.917 5 H 0.023 0.977 6 C 0.137 3.863 7 N -0.632 5.632 8 C 0.700 3.300 9 O -0.637 6.637 10 N -0.728 5.728 11 C 0.212 3.788 12 C -0.223 4.223 13 C -0.068 4.068 14 C -0.239 4.239 15 C 0.086 3.914 16 C -0.495 4.495 17 H 0.078 0.922 18 C 0.032 3.968 19 N -0.826 5.826 20 Si 0.984 3.016 21 H -0.259 1.259 22 H -0.270 1.270 23 H -0.260 1.260 24 C -0.187 4.187 25 C -0.083 4.083 26 C 0.112 3.888 27 C 0.044 3.956 28 N -0.534 5.534 29 C 0.022 3.978 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.403 0.597 40 H 0.057 0.943 41 H 0.049 0.951 42 H 0.116 0.884 43 H 0.100 0.900 44 H 0.288 0.712 45 H 0.103 0.897 46 H 0.101 0.899 47 H 0.085 0.915 48 H 0.090 0.910 49 H 0.112 0.888 50 H 0.024 0.976 51 H 0.020 0.980 52 H 0.080 0.920 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.429 0.321 -21.996 23.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.102 4.102 3 C -0.209 4.209 4 C -0.027 4.027 5 H 0.041 0.959 6 C 0.014 3.986 7 N -0.369 5.369 8 C 0.401 3.599 9 O -0.520 6.520 10 N -0.385 5.385 11 C 0.089 3.911 12 C -0.225 4.225 13 C -0.086 4.086 14 C -0.258 4.258 15 C 0.083 3.917 16 C -0.524 4.524 17 H 0.096 0.904 18 C -0.183 4.183 19 N -0.452 5.452 20 Si 0.804 3.196 21 H -0.183 1.183 22 H -0.194 1.194 23 H -0.184 1.184 24 C -0.207 4.207 25 C -0.102 4.102 26 C -0.011 4.011 27 C -0.085 4.085 28 N -0.258 5.258 29 C -0.125 4.125 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.241 0.759 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.134 0.866 43 H 0.118 0.882 44 H 0.098 0.902 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.104 0.896 48 H 0.108 0.892 49 H 0.130 0.870 50 H 0.042 0.958 51 H 0.038 0.962 52 H 0.099 0.901 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.423 1.205 -21.927 23.897 hybrid contribution 1.454 -0.888 0.841 1.900 sum -7.969 0.317 -21.086 22.544 Atomic orbital electron populations 1.21774 0.93490 1.02710 1.01531 1.21146 0.97506 0.95667 0.95882 1.21904 1.00647 0.95810 1.02505 1.21986 0.95867 0.89330 0.95498 0.95884 1.21750 1.00512 0.94472 0.81827 1.47417 1.60701 1.11004 1.17753 1.16097 0.78661 0.84327 0.80780 1.90843 1.59734 1.18436 1.82954 1.45567 1.66247 1.13941 1.12754 1.19570 0.96569 0.92762 0.82207 1.19185 0.96841 1.05448 1.01027 1.20676 0.97292 0.96758 0.93916 1.21184 1.00198 1.02046 1.02411 1.18017 0.91705 0.90602 0.91354 1.19872 0.93707 1.21864 1.16961 0.90381 1.26786 0.94823 0.99379 0.97265 1.69859 1.01089 1.35816 1.38483 0.85222 0.78177 0.77718 0.78437 1.18289 1.19434 1.18446 1.21309 1.00850 1.02413 0.96113 1.20743 0.96341 0.95907 0.97244 1.21823 1.02039 0.79075 0.98174 1.22434 0.97081 0.98960 0.90043 1.61995 1.59093 1.01394 1.03332 1.22485 0.98905 0.99856 0.91261 0.93229 0.92048 0.91389 0.89858 0.93471 0.90880 0.93004 0.89921 0.90468 0.75899 0.92422 0.93229 0.86625 0.88169 0.90152 0.87938 0.88066 0.89642 0.89222 0.86974 0.95770 0.96168 0.90129 0.89770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.40 71.98 0.60 -1.10 16 2 C -0.08 -1.15 2.21 -10.79 -0.02 -1.17 16 3 C -0.15 -2.20 8.83 71.98 0.64 -1.56 16 4 C 0.08 1.52 1.81 45.00 0.08 1.60 16 5 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 6 C 0.14 3.12 5.13 86.35 0.44 3.56 16 7 N -0.63 -16.20 3.02 -836.82 -2.52 -18.73 16 8 C 0.70 23.26 8.31 179.05 1.49 24.75 16 9 O -0.64 -26.03 15.80 -4.00 -0.06 -26.09 16 10 N -0.73 -23.24 5.46 -482.29 -2.63 -25.87 16 11 C 0.21 7.67 5.79 85.64 0.50 8.16 16 12 C -0.22 -9.05 5.27 -19.67 -0.10 -9.15 16 13 C -0.07 -2.80 9.67 22.22 0.21 -2.59 16 14 C -0.24 -11.21 9.80 22.73 0.22 -10.98 16 15 C 0.09 4.48 5.57 -21.29 -0.12 4.36 16 16 C -0.49 -25.90 9.07 23.46 0.21 -25.69 16 17 H 0.08 3.91 7.88 -2.91 -0.02 3.89 16 18 C 0.03 1.59 5.22 85.25 0.44 2.03 16 19 N -0.83 -42.62 10.84 21.82 0.24 -42.38 16 20 Si 0.98 37.28 29.58 68.60 2.03 39.31 16 21 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 22 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 23 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 24 C -0.19 -9.55 8.68 22.73 0.20 -9.36 16 25 C -0.08 -3.72 9.67 22.22 0.21 -3.51 16 26 C 0.11 2.14 6.50 86.19 0.56 2.70 16 27 C 0.04 0.71 5.60 86.23 0.48 1.20 16 28 N -0.53 -8.36 3.86 -897.00 -3.46 -11.82 16 29 C 0.02 0.26 8.67 127.69 1.11 1.37 16 30 H 0.05 0.68 6.69 -2.39 -0.02 0.67 16 31 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.07 0.89 6.98 -2.39 -0.02 0.87 16 33 H 0.08 1.00 6.52 -2.39 -0.02 0.99 16 34 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.05 0.86 6.57 -2.39 -0.02 0.85 16 37 H 0.08 1.72 6.32 -2.39 -0.02 1.70 16 38 H 0.08 2.08 5.70 -2.39 -0.01 2.07 16 39 H 0.40 11.52 6.01 -92.72 -0.56 10.96 16 40 H 0.06 2.09 8.08 -2.39 -0.02 2.07 16 41 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 42 H 0.12 4.14 8.06 -2.92 -0.02 4.12 16 43 H 0.10 4.44 8.06 -2.91 -0.02 4.42 16 44 H 0.29 13.49 8.30 -92.71 -0.77 12.73 16 45 H 0.10 5.53 6.15 -2.91 -0.02 5.51 16 46 H 0.10 4.16 8.06 -2.91 -0.02 4.14 16 47 H 0.09 1.62 5.76 -2.39 -0.01 1.60 16 48 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.11 1.34 7.97 -2.39 -0.02 1.32 16 50 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 51 H 0.02 0.26 8.11 -2.39 -0.02 0.24 16 52 H 0.08 0.77 7.94 -2.39 -0.02 0.75 16 53 H 0.08 0.82 6.24 -2.39 -0.01 0.81 16 Total: -1.00 -62.60 406.38 1.09 -61.51 By element: Atomic # 1 Polarization: 39.10 SS G_CDS: 0.35 Total: 39.45 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: 7.16 Total: -15.38 kcal Atomic # 7 Polarization: -90.42 SS G_CDS: -8.38 Total: -98.80 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.06 Total: -26.09 kcal Atomic # 14 Polarization: 37.28 SS G_CDS: 2.03 Total: 39.31 kcal Total: -62.60 1.09 -61.51 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563042971.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.805 kcal (2) G-P(sol) polarization free energy of solvation -62.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds